Wall clock time and date at job start Tue Mar 31 2020 11:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46834 * 179.97438 * 4 3 2 6 6 C 1.36881 * 120.00192 * 263.88897 * 5 4 3 7 7 H 1.08005 * 119.99953 * 137.40427 * 6 5 4 8 8 C 1.39036 * 119.99983 * 317.40591 * 6 5 4 9 9 N 1.31370 * 120.00449 * 346.89825 * 8 6 5 10 10 Si 1.86801 * 120.00032 * 166.89620 * 8 6 5 11 11 H 1.48506 * 109.47031 * 59.99721 * 10 8 6 12 12 H 1.48494 * 109.47475 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47239 * 300.00340 * 10 8 6 14 14 C 1.34776 * 119.99759 * 83.89745 * 5 4 3 15 15 O 1.21621 * 119.99839 * 3.70541 * 14 5 4 16 16 C 1.47555 * 119.99976 * 183.70823 * 14 5 4 17 17 C 1.40288 * 120.50343 * 330.82300 * 16 14 5 18 18 C 1.38009 * 118.35119 * 179.97438 * 17 16 14 19 19 C 1.39174 * 119.26237 * 359.97438 * 18 17 16 20 20 N 1.39495 * 119.52136 * 180.02562 * 19 18 17 21 21 C 1.35912 * 126.10425 * 179.97438 * 20 19 18 22 22 C 1.35249 * 107.60453 * 179.75032 * 21 20 19 23 23 C 1.40003 * 107.96991 * 0.38926 * 22 21 20 24 24 N 1.30795 * 108.37650 * 359.60409 * 23 22 21 25 25 N 1.32449 * 120.95414 * 0.27932 * 19 18 17 26 26 C 1.31619 * 121.80736 * 359.43381 * 25 19 18 27 27 H 1.09000 * 109.47004 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.46880 * 60.00119 * 1 2 3 29 29 H 1.08991 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47261 * 240.00020 * 2 1 3 31 31 H 1.09002 * 109.46880 * 119.99881 * 2 1 3 32 32 H 1.09005 * 109.46587 * 59.99738 * 3 2 1 33 33 H 1.08996 * 109.47004 * 300.00425 * 3 2 1 34 34 H 1.09006 * 109.46597 * 60.00333 * 4 3 2 35 35 H 1.08993 * 109.47261 * 300.00686 * 4 3 2 36 36 H 0.96992 * 120.00365 * 180.02562 * 9 8 6 37 37 H 1.08005 * 120.81862 * 359.94688 * 17 16 14 38 38 H 1.07996 * 120.36764 * 179.97438 * 18 17 16 39 39 H 1.07993 * 126.20096 * 0.03059 * 21 20 19 40 40 H 1.07997 * 126.01515 * 180.24043 * 22 21 20 41 41 H 1.07997 * 125.81021 * 179.86223 * 23 22 21 42 42 H 1.07998 * 119.68410 * 180.29332 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.4059 3.4263 -1.1789 7 1 4.1137 4.4484 -1.3696 8 6 5.1352 2.7226 -2.1307 9 7 5.7100 1.5858 -1.8094 10 14 5.2978 3.3935 -3.8665 11 1 5.9547 4.7246 -3.8232 12 1 6.1179 2.4624 -4.6823 13 1 3.9493 3.5266 -4.4740 14 6 4.1655 3.5011 1.1603 15 8 3.9213 2.9449 2.2139 16 6 4.5789 4.9175 1.1522 17 6 5.4164 5.4091 0.1398 18 6 5.7750 6.7414 0.1752 19 6 5.2979 7.5472 1.2048 20 7 5.6565 8.8946 1.2455 21 6 5.2696 9.7983 2.1840 22 6 5.8355 10.9851 1.8669 23 6 6.5836 10.8080 0.6969 24 7 6.4799 9.5579 0.3264 25 7 4.5123 7.0520 2.1492 26 6 4.1412 5.7892 2.1513 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9288 0.8907 36 1 6.2191 1.0951 -2.4734 37 1 5.7720 4.7609 -0.6475 38 1 6.4186 7.1540 -0.5875 39 1 4.6301 9.6031 3.0321 40 1 5.7272 11.9076 2.4179 41 1 7.1530 11.5724 0.1892 42 1 3.4958 5.4227 2.9359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189962166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:52 Heat of formation + Delta-G solvation = 87.588149 kcal Electronic energy + Delta-G solvation = -25556.375635 eV Core-core repulsion = 21924.743820 eV Total energy + Delta-G solvation = -3631.631816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43204 -39.88941 -38.28818 -35.46978 -34.26273 -33.28257 -32.22414 -31.65515 -30.34891 -29.41649 -28.24702 -25.37537 -24.41609 -23.52591 -22.59455 -21.04927 -20.69946 -20.49027 -19.47955 -18.30404 -17.72397 -16.21855 -15.86276 -15.37503 -15.03938 -14.84085 -14.77686 -14.43934 -14.01072 -13.99573 -13.78326 -13.34362 -13.24175 -12.88312 -12.82036 -12.58766 -12.29836 -12.12657 -12.01796 -11.56146 -11.21022 -11.15762 -10.85107 -10.70356 -10.59687 -10.47750 -10.39411 -10.17929 -9.85461 -9.51163 -9.44472 -9.19813 -9.12180 -8.65266 -8.02277 -7.62628 -6.57913 -4.34293 0.79473 1.61850 2.16204 2.24829 2.74503 3.00489 3.09059 3.10356 3.68563 3.91017 4.31729 4.44198 4.53792 4.67719 4.81427 4.94091 5.32514 5.34314 5.43005 5.46838 5.52900 5.56952 5.60577 5.69604 5.87389 5.91454 6.01558 6.07006 6.19501 6.29719 6.33129 6.43548 6.50540 6.55553 6.63471 6.73656 6.75430 6.87413 7.01801 7.16142 7.23917 7.32476 7.47513 7.76091 8.11061 8.14815 8.80933 9.26228 9.70448 10.42076 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003906 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.374647 B = 7165.875545 C = 8564.913422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.119 3.881 5 N -0.423 5.423 6 C -0.351 4.351 7 H 0.093 0.907 8 C 0.048 3.952 9 N -0.851 5.851 10 Si 0.911 3.089 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.514 3.486 15 O -0.596 6.596 16 C -0.153 4.153 17 C -0.014 4.014 18 C -0.179 4.179 19 C 0.355 3.645 20 N -0.317 5.317 21 C 0.080 3.920 22 C -0.275 4.275 23 C 0.054 3.946 24 N -0.283 5.283 25 N -0.518 5.518 26 C 0.164 3.836 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.275 0.725 37 H 0.188 0.812 38 H 0.144 0.856 39 H 0.181 0.819 40 H 0.153 0.847 41 H 0.190 0.810 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 8.893 1.472 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.004 4.004 5 N -0.139 5.139 6 C -0.479 4.479 7 H 0.110 0.890 8 C -0.160 4.160 9 N -0.486 5.486 10 Si 0.736 3.264 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.195 1.195 14 C 0.302 3.698 15 O -0.483 6.483 16 C -0.158 4.158 17 C -0.040 4.040 18 C -0.202 4.202 19 C 0.128 3.872 20 N -0.094 5.094 21 C -0.063 4.063 22 C -0.303 4.303 23 C -0.134 4.134 24 N -0.102 5.102 25 N -0.231 5.231 26 C 0.005 3.995 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.205 0.795 38 H 0.162 0.838 39 H 0.198 0.802 40 H 0.170 0.830 41 H 0.207 0.793 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.937 7.991 1.664 8.389 hybrid contribution 0.137 0.520 -0.969 1.108 sum -1.801 8.511 0.694 8.727 Atomic orbital electron populations 1.21759 0.96592 1.00741 1.01500 1.21424 0.95022 0.97583 1.01680 1.21934 0.97729 0.95732 1.01449 1.21421 0.91021 0.84432 1.03554 1.43257 1.54078 1.11866 1.04749 1.19474 1.34379 0.99994 0.94038 0.88968 1.25469 0.94300 0.96119 1.00110 1.69828 1.28874 1.14762 1.35104 0.86234 0.78957 0.79271 0.81896 1.19138 1.20495 1.19457 1.17971 0.81586 0.85873 0.84352 1.90649 1.56460 1.70056 1.31109 1.21131 1.01046 0.96667 0.96989 1.23077 0.90426 0.93820 0.96656 1.21663 1.04135 0.94556 0.99820 1.17863 0.94985 0.81329 0.92992 1.45780 1.37199 1.06142 1.20312 1.22931 0.99351 0.88876 0.95138 1.21600 1.07789 0.99133 1.01808 1.24100 0.99075 0.94084 0.96115 1.77461 1.12419 1.07058 1.13255 1.66797 1.14682 1.16420 1.25219 1.22560 0.95140 0.85514 0.96291 0.93043 0.93056 0.93370 0.92221 0.92304 0.92749 0.92313 0.87864 0.92601 0.91430 0.79519 0.83826 0.80205 0.82968 0.79343 0.81336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.90 5.93 -26.72 -0.16 -2.05 16 3 C -0.13 -2.49 5.49 -26.73 -0.15 -2.64 16 4 C 0.12 2.66 4.87 -4.04 -0.02 2.64 16 5 N -0.42 -9.98 2.50 -115.99 -0.29 -10.27 16 6 C -0.35 -8.08 6.06 -15.00 -0.09 -8.17 16 7 H 0.09 2.06 6.17 -52.48 -0.32 1.74 16 8 C 0.05 1.10 4.98 -17.45 -0.09 1.02 16 9 N -0.85 -20.65 11.41 55.50 0.63 -20.01 16 10 Si 0.91 17.92 29.57 -169.99 -5.03 12.89 16 11 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 12 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 14 C 0.51 12.11 7.40 -12.46 -0.09 12.01 16 15 O -0.60 -15.17 16.37 5.26 0.09 -15.08 16 16 C -0.15 -3.16 5.60 -104.81 -0.59 -3.75 16 17 C -0.01 -0.28 7.89 -38.90 -0.31 -0.58 16 18 C -0.18 -3.25 9.68 -39.32 -0.38 -3.63 16 19 C 0.35 6.39 7.55 -154.48 -1.17 5.22 16 20 N -0.32 -5.18 3.80 -12.09 -0.05 -5.23 16 21 C 0.08 1.07 11.09 -16.81 -0.19 0.88 16 22 C -0.27 -3.06 10.80 -39.99 -0.43 -3.49 16 23 C 0.05 0.64 12.02 -17.33 -0.21 0.43 16 24 N -0.28 -4.39 11.81 30.64 0.36 -4.02 16 25 N -0.52 -9.32 9.82 -11.97 -0.12 -9.44 16 26 C 0.16 3.07 10.76 -17.13 -0.18 2.88 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 2.43 5.69 -51.93 -0.30 2.13 16 35 H 0.06 1.31 7.56 -51.93 -0.39 0.92 16 36 H 0.28 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.19 3.87 5.16 -52.48 -0.27 3.60 16 38 H 0.14 2.44 7.67 -52.49 -0.40 2.03 16 39 H 0.18 2.08 8.05 -52.49 -0.42 1.66 16 40 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.17 2.92 7.91 -52.49 -0.42 2.50 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -27.87 356.27 -8.17 -36.04 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.46 Total: 10.63 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.68 Total: -0.87 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.54 Total: -48.98 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.09 Total: -15.08 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.87 -8.17 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189962166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.625 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds