Wall clock time and date at job start Tue Mar 31 2020 11:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46834 * 179.97438 * 4 3 2 6 6 C 1.36881 * 120.00192 * 263.88897 * 5 4 3 7 7 H 1.08005 * 119.99953 * 137.40427 * 6 5 4 8 8 C 1.39036 * 119.99983 * 317.40591 * 6 5 4 9 9 N 1.31370 * 120.00449 * 346.89825 * 8 6 5 10 10 Si 1.86801 * 120.00032 * 166.89620 * 8 6 5 11 11 H 1.48506 * 109.47031 * 59.99721 * 10 8 6 12 12 H 1.48494 * 109.47475 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47239 * 300.00340 * 10 8 6 14 14 C 1.34776 * 119.99759 * 83.89745 * 5 4 3 15 15 O 1.21621 * 119.99839 * 3.70541 * 14 5 4 16 16 C 1.47555 * 119.99976 * 183.70823 * 14 5 4 17 17 C 1.40288 * 120.50343 * 330.82300 * 16 14 5 18 18 C 1.38009 * 118.35119 * 179.97438 * 17 16 14 19 19 C 1.39174 * 119.26237 * 359.97438 * 18 17 16 20 20 N 1.39495 * 119.52136 * 180.02562 * 19 18 17 21 21 C 1.35912 * 126.10425 * 179.97438 * 20 19 18 22 22 C 1.35249 * 107.60453 * 179.75032 * 21 20 19 23 23 C 1.40003 * 107.96991 * 0.38926 * 22 21 20 24 24 N 1.30795 * 108.37650 * 359.60409 * 23 22 21 25 25 N 1.32449 * 120.95414 * 0.27932 * 19 18 17 26 26 C 1.31619 * 121.80736 * 359.43381 * 25 19 18 27 27 H 1.09000 * 109.47004 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.46880 * 60.00119 * 1 2 3 29 29 H 1.08991 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47261 * 240.00020 * 2 1 3 31 31 H 1.09002 * 109.46880 * 119.99881 * 2 1 3 32 32 H 1.09005 * 109.46587 * 59.99738 * 3 2 1 33 33 H 1.08996 * 109.47004 * 300.00425 * 3 2 1 34 34 H 1.09006 * 109.46597 * 60.00333 * 4 3 2 35 35 H 1.08993 * 109.47261 * 300.00686 * 4 3 2 36 36 H 0.96992 * 120.00365 * 180.02562 * 9 8 6 37 37 H 1.08005 * 120.81862 * 359.94688 * 17 16 14 38 38 H 1.07996 * 120.36764 * 179.97438 * 18 17 16 39 39 H 1.07993 * 126.20096 * 0.03059 * 21 20 19 40 40 H 1.07997 * 126.01515 * 180.24043 * 22 21 20 41 41 H 1.07997 * 125.81021 * 179.86223 * 23 22 21 42 42 H 1.07998 * 119.68410 * 180.29332 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.4059 3.4263 -1.1789 7 1 4.1137 4.4484 -1.3696 8 6 5.1352 2.7226 -2.1307 9 7 5.7100 1.5858 -1.8094 10 14 5.2978 3.3935 -3.8665 11 1 5.9547 4.7246 -3.8232 12 1 6.1179 2.4624 -4.6823 13 1 3.9493 3.5266 -4.4740 14 6 4.1655 3.5011 1.1603 15 8 3.9213 2.9449 2.2139 16 6 4.5789 4.9175 1.1522 17 6 5.4164 5.4091 0.1398 18 6 5.7750 6.7414 0.1752 19 6 5.2979 7.5472 1.2048 20 7 5.6565 8.8946 1.2455 21 6 5.2696 9.7983 2.1840 22 6 5.8355 10.9851 1.8669 23 6 6.5836 10.8080 0.6969 24 7 6.4799 9.5579 0.3264 25 7 4.5123 7.0520 2.1492 26 6 4.1412 5.7892 2.1513 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9288 0.8907 36 1 6.2191 1.0951 -2.4734 37 1 5.7720 4.7609 -0.6475 38 1 6.4186 7.1540 -0.5875 39 1 4.6301 9.6031 3.0321 40 1 5.7272 11.9076 2.4179 41 1 7.1530 11.5724 0.1892 42 1 3.4958 5.4227 2.9359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189962166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:51 Heat of formation + Delta-G solvation = 74.146361 kcal Electronic energy + Delta-G solvation = -25556.958515 eV Core-core repulsion = 21924.743820 eV Total energy + Delta-G solvation = -3632.214695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55814 -41.39662 -39.94698 -37.22045 -35.78150 -34.58612 -33.73194 -33.36829 -31.47783 -30.70434 -29.71147 -27.13439 -25.82316 -24.92958 -24.04175 -22.30109 -21.98280 -21.70532 -21.22897 -19.65733 -19.27410 -17.86723 -17.42078 -16.60436 -16.51223 -16.47304 -16.14545 -15.94446 -15.64191 -15.33977 -15.12482 -14.66810 -14.54603 -14.25321 -14.17154 -13.78720 -13.73622 -13.64432 -13.50701 -13.14377 -12.86311 -12.77534 -12.19485 -12.09343 -11.97161 -11.87003 -11.83816 -11.43846 -11.43127 -11.07306 -11.02802 -10.86494 -10.42699 -10.20706 -9.50008 -9.27720 -8.35602 -6.17748 -0.58672 0.14073 0.95366 1.07599 1.43647 1.47748 1.55050 1.85081 2.02892 2.25401 2.72465 2.82310 3.05867 3.22038 3.48849 3.89515 3.96563 3.97997 4.09419 4.10957 4.19208 4.29674 4.35149 4.50619 4.58037 4.64453 4.71825 4.84718 4.86984 4.96976 5.00095 5.05637 5.08402 5.17651 5.22381 5.31222 5.37068 5.42430 5.43553 5.55288 5.64461 5.96393 6.02010 6.32175 6.34429 6.79018 7.00284 7.44275 7.89148 8.65688 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003906 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.374647 B = 7165.875545 C = 8564.913422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.121 3.879 5 N -0.434 5.434 6 C -0.358 4.358 7 H 0.097 0.903 8 C 0.015 3.985 9 N -0.884 5.884 10 Si 0.971 3.029 11 H -0.258 1.258 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.504 3.496 15 O -0.626 6.626 16 C -0.180 4.180 17 C -0.011 4.011 18 C -0.182 4.182 19 C 0.366 3.634 20 N -0.341 5.341 21 C 0.057 3.943 22 C -0.254 4.254 23 C 0.068 3.932 24 N -0.323 5.323 25 N -0.516 5.516 26 C 0.174 3.826 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.034 0.966 36 H 0.277 0.723 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.192 0.808 40 H 0.191 0.809 41 H 0.231 0.769 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 11.656 0.912 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.156 4.156 4 C -0.002 4.002 5 N -0.149 5.149 6 C -0.485 4.485 7 H 0.115 0.885 8 C -0.190 4.190 9 N -0.519 5.519 10 Si 0.794 3.206 11 H -0.182 1.182 12 H -0.206 1.206 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.515 6.515 16 C -0.186 4.186 17 C -0.037 4.037 18 C -0.204 4.204 19 C 0.138 3.862 20 N -0.120 5.120 21 C -0.083 4.083 22 C -0.282 4.282 23 C -0.120 4.120 24 N -0.142 5.142 25 N -0.230 5.230 26 C 0.015 3.985 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.191 0.809 38 H 0.172 0.828 39 H 0.209 0.791 40 H 0.208 0.792 41 H 0.248 0.752 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.119 10.791 1.108 11.053 hybrid contribution 0.283 -0.104 -0.725 0.785 sum -1.836 10.687 0.383 10.850 Atomic orbital electron populations 1.21715 0.94233 1.02342 1.01759 1.21408 0.97043 0.95064 1.01844 1.21807 0.95280 0.97974 1.00520 1.21387 0.93101 0.83992 1.01740 1.43495 1.54093 1.12188 1.05140 1.19671 1.34594 1.00324 0.93899 0.88525 1.26156 0.93617 0.96110 1.03110 1.69930 1.29778 1.16006 1.36226 0.85312 0.78835 0.78902 0.77553 1.18184 1.20570 1.19225 1.18420 0.81172 0.87094 0.83930 1.90601 1.57903 1.71058 1.31931 1.20946 1.03242 0.95522 0.98854 1.22824 0.90394 0.94393 0.96045 1.21667 1.04509 0.93811 1.00454 1.18056 0.93465 0.82539 0.92142 1.45853 1.38709 1.05624 1.21765 1.23433 1.00177 0.89327 0.95312 1.22099 1.05503 0.99506 1.01065 1.24941 0.97765 0.93506 0.95835 1.77471 1.13598 1.08835 1.14268 1.66913 1.15022 1.15735 1.25310 1.22669 0.94607 0.85582 0.95664 0.92985 0.92622 0.91102 0.91867 0.92367 0.94037 0.92620 0.89034 0.94779 0.91348 0.80870 0.82809 0.79086 0.79176 0.75238 0.80343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.68 5.93 30.60 0.18 -3.50 16 3 C -0.12 -4.64 5.49 30.60 0.17 -4.47 16 4 C 0.12 5.68 4.87 86.38 0.42 6.10 16 5 N -0.43 -21.33 2.50 -639.12 -1.60 -22.93 16 6 C -0.36 -16.91 6.06 84.10 0.51 -16.40 16 7 H 0.10 4.42 6.17 -2.91 -0.02 4.40 16 8 C 0.02 0.70 4.98 84.95 0.42 1.13 16 9 N -0.88 -44.08 11.41 21.68 0.25 -43.84 16 10 Si 0.97 36.75 29.57 68.60 2.03 38.78 16 11 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 12 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 13 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 14 C 0.50 24.84 7.40 86.70 0.64 25.48 16 15 O -0.63 -33.35 16.37 -4.10 -0.07 -33.42 16 16 C -0.18 -7.69 5.60 -19.99 -0.11 -7.80 16 17 C -0.01 -0.43 7.89 22.71 0.18 -0.25 16 18 C -0.18 -6.58 9.68 22.44 0.22 -6.37 16 19 C 0.37 12.93 7.55 132.89 1.00 13.94 16 20 N -0.34 -10.61 3.80 -192.17 -0.73 -11.34 16 21 C 0.06 1.40 11.09 83.37 0.92 2.32 16 22 C -0.25 -4.60 10.80 22.01 0.24 -4.36 16 23 C 0.07 1.34 12.02 85.28 1.02 2.36 16 24 N -0.32 -9.30 11.81 -56.96 -0.67 -9.97 16 25 N -0.52 -18.37 9.82 -191.77 -1.88 -20.25 16 26 C 0.17 6.58 10.76 85.06 0.92 7.50 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 4.50 5.69 -2.38 -0.01 4.49 16 35 H 0.03 1.70 7.56 -2.39 -0.02 1.68 16 36 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 37 H 0.17 7.42 5.16 -2.91 -0.02 7.40 16 38 H 0.15 5.16 7.67 -2.91 -0.02 5.14 16 39 H 0.19 4.01 8.05 -2.91 -0.02 3.99 16 40 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.23 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.18 6.28 7.91 -2.91 -0.02 6.26 16 Total: -1.00 -62.15 356.27 5.81 -56.34 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 1.03 Total: 33.89 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 7.45 Total: 12.72 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -4.64 Total: -108.32 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.07 Total: -33.42 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -62.15 5.81 -56.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189962166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.488 kcal (2) G-P(sol) polarization free energy of solvation -62.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds