Wall clock time and date at job start Tue Mar 31 2020 11:43:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53005 * 109.47118 * 2 1
4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1
5 5 N 1.46500 * 109.46834 * 179.97438 * 4 3 2
6 6 C 1.36881 * 120.00192 * 263.88897 * 5 4 3
7 7 H 1.08005 * 119.99953 * 137.40427 * 6 5 4
8 8 C 1.39036 * 119.99983 * 317.40591 * 6 5 4
9 9 N 1.31370 * 120.00449 * 346.89825 * 8 6 5
10 10 Si 1.86801 * 120.00032 * 166.89620 * 8 6 5
11 11 H 1.48506 * 109.47031 * 59.99721 * 10 8 6
12 12 H 1.48494 * 109.47475 * 180.02562 * 10 8 6
13 13 H 1.48502 * 109.47239 * 300.00340 * 10 8 6
14 14 C 1.34776 * 119.99759 * 83.89745 * 5 4 3
15 15 O 1.21621 * 119.99839 * 3.70541 * 14 5 4
16 16 C 1.47555 * 119.99976 * 183.70823 * 14 5 4
17 17 C 1.40288 * 120.50343 * 330.82300 * 16 14 5
18 18 C 1.38009 * 118.35119 * 179.97438 * 17 16 14
19 19 C 1.39174 * 119.26237 * 359.97438 * 18 17 16
20 20 N 1.39495 * 119.52136 * 180.02562 * 19 18 17
21 21 C 1.35912 * 126.10425 * 179.97438 * 20 19 18
22 22 C 1.35249 * 107.60453 * 179.75032 * 21 20 19
23 23 C 1.40003 * 107.96991 * 0.38926 * 22 21 20
24 24 N 1.30795 * 108.37650 * 359.60409 * 23 22 21
25 25 N 1.32449 * 120.95414 * 0.27932 * 19 18 17
26 26 C 1.31619 * 121.80736 * 359.43381 * 25 19 18
27 27 H 1.09000 * 109.47004 * 300.00316 * 1 2 3
28 28 H 1.09002 * 109.46880 * 60.00119 * 1 2 3
29 29 H 1.08991 * 109.47228 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47261 * 240.00020 * 2 1 3
31 31 H 1.09002 * 109.46880 * 119.99881 * 2 1 3
32 32 H 1.09005 * 109.46587 * 59.99738 * 3 2 1
33 33 H 1.08996 * 109.47004 * 300.00425 * 3 2 1
34 34 H 1.09006 * 109.46597 * 60.00333 * 4 3 2
35 35 H 1.08993 * 109.47261 * 300.00686 * 4 3 2
36 36 H 0.96992 * 120.00365 * 180.02562 * 9 8 6
37 37 H 1.08005 * 120.81862 * 359.94688 * 17 16 14
38 38 H 1.07996 * 120.36764 * 179.97438 * 18 17 16
39 39 H 1.07993 * 126.20096 * 0.03059 * 21 20 19
40 40 H 1.07997 * 126.01515 * 180.24043 * 22 21 20
41 41 H 1.07997 * 125.81021 * 179.86223 * 23 22 21
42 42 H 1.07998 * 119.68410 * 180.29332 * 26 25 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5701 1.4425 0.0006
5 7 4.0583 2.8238 0.0000
6 6 4.4059 3.4263 -1.1789
7 1 4.1137 4.4484 -1.3696
8 6 5.1352 2.7226 -2.1307
9 7 5.7100 1.5858 -1.8094
10 14 5.2978 3.3935 -3.8665
11 1 5.9547 4.7246 -3.8232
12 1 6.1179 2.4624 -4.6823
13 1 3.9493 3.5266 -4.4740
14 6 4.1655 3.5011 1.1603
15 8 3.9213 2.9449 2.2139
16 6 4.5789 4.9175 1.1522
17 6 5.4164 5.4091 0.1398
18 6 5.7750 6.7414 0.1752
19 6 5.2979 7.5472 1.2048
20 7 5.6565 8.8946 1.2455
21 6 5.2696 9.7983 2.1840
22 6 5.8355 10.9851 1.8669
23 6 6.5836 10.8080 0.6969
24 7 6.4799 9.5579 0.3264
25 7 4.5123 7.0520 2.1492
26 6 4.1412 5.7892 2.1513
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8934 -0.5138 -0.8899
31 1 1.8934 -0.5138 0.8900
32 1 1.6767 1.9563 0.8900
33 1 1.6767 1.9564 -0.8899
34 1 3.9337 0.9286 -0.8892
35 1 3.9330 0.9288 0.8907
36 1 6.2191 1.0951 -2.4734
37 1 5.7720 4.7609 -0.6475
38 1 6.4186 7.1540 -0.5875
39 1 4.6301 9.6031 3.0321
40 1 5.7272 11.9076 2.4179
41 1 7.1530 11.5724 0.1892
42 1 3.4958 5.4227 2.9359
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001189962166.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:43:51
Heat of formation + Delta-G solvation = 74.146361 kcal
Electronic energy + Delta-G solvation = -25556.958515 eV
Core-core repulsion = 21924.743820 eV
Total energy + Delta-G solvation = -3632.214695 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.55814 -41.39662 -39.94698 -37.22045 -35.78150 -34.58612 -33.73194 -33.36829
-31.47783 -30.70434 -29.71147 -27.13439 -25.82316 -24.92958 -24.04175 -22.30109
-21.98280 -21.70532 -21.22897 -19.65733 -19.27410 -17.86723 -17.42078 -16.60436
-16.51223 -16.47304 -16.14545 -15.94446 -15.64191 -15.33977 -15.12482 -14.66810
-14.54603 -14.25321 -14.17154 -13.78720 -13.73622 -13.64432 -13.50701 -13.14377
-12.86311 -12.77534 -12.19485 -12.09343 -11.97161 -11.87003 -11.83816 -11.43846
-11.43127 -11.07306 -11.02802 -10.86494 -10.42699 -10.20706 -9.50008 -9.27720
-8.35602 -6.17748 -0.58672 0.14073 0.95366 1.07599 1.43647 1.47748
1.55050 1.85081 2.02892 2.25401 2.72465 2.82310 3.05867 3.22038
3.48849 3.89515 3.96563 3.97997 4.09419 4.10957 4.19208 4.29674
4.35149 4.50619 4.58037 4.64453 4.71825 4.84718 4.86984 4.96976
5.00095 5.05637 5.08402 5.17651 5.22381 5.31222 5.37068 5.42430
5.43553 5.55288 5.64461 5.96393 6.02010 6.32175 6.34429 6.79018
7.00284 7.44275 7.89148 8.65688
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.014375 B = 0.003906 C = 0.003268
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1947.374647 B = 7165.875545 C = 8564.913422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.115 4.115
3 C -0.117 4.117
4 C 0.121 3.879
5 N -0.434 5.434
6 C -0.358 4.358
7 H 0.097 0.903
8 C 0.015 3.985
9 N -0.884 5.884
10 Si 0.971 3.029
11 H -0.258 1.258
12 H -0.281 1.281
13 H -0.267 1.267
14 C 0.504 3.496
15 O -0.626 6.626
16 C -0.180 4.180
17 C -0.011 4.011
18 C -0.182 4.182
19 C 0.366 3.634
20 N -0.341 5.341
21 C 0.057 3.943
22 C -0.254 4.254
23 C 0.068 3.932
24 N -0.323 5.323
25 N -0.516 5.516
26 C 0.174 3.826
27 H 0.051 0.949
28 H 0.055 0.945
29 H 0.070 0.930
30 H 0.063 0.937
31 H 0.058 0.942
32 H 0.041 0.959
33 H 0.055 0.945
34 H 0.092 0.908
35 H 0.034 0.966
36 H 0.277 0.723
37 H 0.174 0.826
38 H 0.154 0.846
39 H 0.192 0.808
40 H 0.191 0.809
41 H 0.231 0.769
42 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.146 11.656 0.912 11.887
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.154 4.154
3 C -0.156 4.156
4 C -0.002 4.002
5 N -0.149 5.149
6 C -0.485 4.485
7 H 0.115 0.885
8 C -0.190 4.190
9 N -0.519 5.519
10 Si 0.794 3.206
11 H -0.182 1.182
12 H -0.206 1.206
13 H -0.192 1.192
14 C 0.294 3.706
15 O -0.515 6.515
16 C -0.186 4.186
17 C -0.037 4.037
18 C -0.204 4.204
19 C 0.138 3.862
20 N -0.120 5.120
21 C -0.083 4.083
22 C -0.282 4.282
23 C -0.120 4.120
24 N -0.142 5.142
25 N -0.230 5.230
26 C 0.015 3.985
27 H 0.070 0.930
28 H 0.074 0.926
29 H 0.089 0.911
30 H 0.081 0.919
31 H 0.076 0.924
32 H 0.060 0.940
33 H 0.074 0.926
34 H 0.110 0.890
35 H 0.052 0.948
36 H 0.087 0.913
37 H 0.191 0.809
38 H 0.172 0.828
39 H 0.209 0.791
40 H 0.208 0.792
41 H 0.248 0.752
42 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -2.119 10.791 1.108 11.053
hybrid contribution 0.283 -0.104 -0.725 0.785
sum -1.836 10.687 0.383 10.850
Atomic orbital electron populations
1.21715 0.94233 1.02342 1.01759 1.21408 0.97043 0.95064 1.01844
1.21807 0.95280 0.97974 1.00520 1.21387 0.93101 0.83992 1.01740
1.43495 1.54093 1.12188 1.05140 1.19671 1.34594 1.00324 0.93899
0.88525 1.26156 0.93617 0.96110 1.03110 1.69930 1.29778 1.16006
1.36226 0.85312 0.78835 0.78902 0.77553 1.18184 1.20570 1.19225
1.18420 0.81172 0.87094 0.83930 1.90601 1.57903 1.71058 1.31931
1.20946 1.03242 0.95522 0.98854 1.22824 0.90394 0.94393 0.96045
1.21667 1.04509 0.93811 1.00454 1.18056 0.93465 0.82539 0.92142
1.45853 1.38709 1.05624 1.21765 1.23433 1.00177 0.89327 0.95312
1.22099 1.05503 0.99506 1.01065 1.24941 0.97765 0.93506 0.95835
1.77471 1.13598 1.08835 1.14268 1.66913 1.15022 1.15735 1.25310
1.22669 0.94607 0.85582 0.95664 0.92985 0.92622 0.91102 0.91867
0.92367 0.94037 0.92620 0.89034 0.94779 0.91348 0.80870 0.82809
0.79086 0.79176 0.75238 0.80343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16
2 C -0.12 -3.68 5.93 30.60 0.18 -3.50 16
3 C -0.12 -4.64 5.49 30.60 0.17 -4.47 16
4 C 0.12 5.68 4.87 86.38 0.42 6.10 16
5 N -0.43 -21.33 2.50 -639.12 -1.60 -22.93 16
6 C -0.36 -16.91 6.06 84.10 0.51 -16.40 16
7 H 0.10 4.42 6.17 -2.91 -0.02 4.40 16
8 C 0.02 0.70 4.98 84.95 0.42 1.13 16
9 N -0.88 -44.08 11.41 21.68 0.25 -43.84 16
10 Si 0.97 36.75 29.57 68.60 2.03 38.78 16
11 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16
12 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16
13 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16
14 C 0.50 24.84 7.40 86.70 0.64 25.48 16
15 O -0.63 -33.35 16.37 -4.10 -0.07 -33.42 16
16 C -0.18 -7.69 5.60 -19.99 -0.11 -7.80 16
17 C -0.01 -0.43 7.89 22.71 0.18 -0.25 16
18 C -0.18 -6.58 9.68 22.44 0.22 -6.37 16
19 C 0.37 12.93 7.55 132.89 1.00 13.94 16
20 N -0.34 -10.61 3.80 -192.17 -0.73 -11.34 16
21 C 0.06 1.40 11.09 83.37 0.92 2.32 16
22 C -0.25 -4.60 10.80 22.01 0.24 -4.36 16
23 C 0.07 1.34 12.02 85.28 1.02 2.36 16
24 N -0.32 -9.30 11.81 -56.96 -0.67 -9.97 16
25 N -0.52 -18.37 9.82 -191.77 -1.88 -20.25 16
26 C 0.17 6.58 10.76 85.06 0.92 7.50 16
27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
32 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16
33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
34 H 0.09 4.50 5.69 -2.38 -0.01 4.49 16
35 H 0.03 1.70 7.56 -2.39 -0.02 1.68 16
36 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16
37 H 0.17 7.42 5.16 -2.91 -0.02 7.40 16
38 H 0.15 5.16 7.67 -2.91 -0.02 5.14 16
39 H 0.19 4.01 8.05 -2.91 -0.02 3.99 16
40 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16
41 H 0.23 2.34 8.06 -2.91 -0.02 2.31 16
42 H 0.18 6.28 7.91 -2.91 -0.02 6.26 16
Total: -1.00 -62.15 356.27 5.81 -56.34
By element:
Atomic # 1 Polarization: 32.86 SS G_CDS: 1.03 Total: 33.89 kcal
Atomic # 6 Polarization: 5.28 SS G_CDS: 7.45 Total: 12.72 kcal
Atomic # 7 Polarization: -103.69 SS G_CDS: -4.64 Total: -108.32 kcal
Atomic # 8 Polarization: -33.35 SS G_CDS: -0.07 Total: -33.42 kcal
Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal
Total: -62.15 5.81 -56.34 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001189962166.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.488 kcal
(2) G-P(sol) polarization free energy of solvation -62.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.341 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.146 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds