Wall clock time and date at job start Tue Mar 31 2020 11:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47176 * 2 1 4 4 C 1.53000 * 109.47327 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47166 * 179.97438 * 4 3 2 6 6 C 1.36868 * 120.00274 * 270.00426 * 5 4 3 7 7 H 1.07997 * 120.00195 * 22.07714 * 6 5 4 8 8 C 1.39041 * 119.99823 * 202.08128 * 6 5 4 9 9 N 1.31365 * 120.00139 * 9.86333 * 8 6 5 10 10 Si 1.86803 * 120.00124 * 189.86471 * 8 6 5 11 11 H 1.48496 * 109.47206 * 89.99538 * 10 8 6 12 12 H 1.48502 * 109.47299 * 210.00339 * 10 8 6 13 13 H 1.48507 * 109.46721 * 329.99879 * 10 8 6 14 14 C 1.34780 * 119.99456 * 90.00545 * 5 4 3 15 15 O 1.21618 * 119.99768 * 241.91526 * 14 5 4 16 16 C 1.47517 * 119.99950 * 61.91733 * 14 5 4 17 17 C 1.39678 * 120.19728 * 51.97570 * 16 14 5 18 18 C 1.37858 * 119.91141 * 179.97438 * 17 16 14 19 19 C 1.38512 * 120.30966 * 0.02562 * 18 17 16 20 20 C 1.38131 * 120.39474 * 359.95865 * 19 18 17 21 21 C 1.38702 * 120.08155 * 0.04346 * 20 19 18 22 22 N 1.39810 * 120.15211 * 180.25242 * 21 20 19 23 23 N 1.28592 * 124.59677 * 186.13192 * 22 21 20 24 24 C 1.31392 * 108.72278 * 179.83170 * 23 22 21 25 25 C 1.39813 * 105.87387 * 0.41598 * 24 23 22 26 26 N 1.28594 * 124.60346 * 6.43745 * 22 21 20 27 27 H 1.09006 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47218 * 299.99793 * 1 2 3 29 29 H 1.09000 * 109.47252 * 60.00534 * 1 2 3 30 30 H 1.09005 * 109.47514 * 240.00085 * 2 1 3 31 31 H 1.09004 * 109.47199 * 120.00405 * 2 1 3 32 32 H 1.08997 * 109.46877 * 59.99999 * 3 2 1 33 33 H 1.09002 * 109.47320 * 299.99746 * 3 2 1 34 34 H 1.09011 * 109.46779 * 60.00185 * 4 3 2 35 35 H 1.08996 * 109.47605 * 300.00379 * 4 3 2 36 36 H 0.97004 * 120.00314 * 184.89914 * 9 8 6 37 37 H 1.07999 * 120.04065 * 359.95908 * 17 16 14 38 38 H 1.07992 * 119.84373 * 180.02562 * 18 17 16 39 39 H 1.08005 * 119.80411 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.95622 * 180.02562 * 20 19 18 41 41 H 1.07996 * 127.06081 * 180.11933 * 24 23 22 42 42 H 1.07998 * 127.06729 * 179.71622 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2868 3.4683 -1.1855 7 1 3.7955 3.1319 -2.0866 8 6 5.1516 4.5562 -1.2299 9 7 5.8955 4.8469 -0.1870 10 14 5.2554 5.6045 -2.7726 11 1 4.2673 6.7097 -2.6875 12 1 6.6226 6.1711 -2.8949 13 1 4.9589 4.7659 -3.9618 14 6 4.2825 3.4597 1.1670 15 8 3.6507 4.4610 1.4450 16 6 5.2941 2.9411 2.1071 17 6 6.5920 2.6737 1.6654 18 6 7.5329 2.1897 2.5491 19 6 7.1975 1.9663 3.8743 20 6 5.9180 2.2267 4.3249 21 6 4.9585 2.7139 3.4498 22 7 3.6644 2.9829 3.9054 23 7 2.6816 3.3275 3.1511 24 6 1.6151 3.4978 3.8994 25 6 2.0223 3.2354 5.2110 26 7 3.2967 2.9248 5.1363 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9336 0.9285 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 6.4456 5.6459 -0.1911 37 1 6.8578 2.8457 0.6328 38 1 8.5361 1.9837 2.2065 39 1 7.9410 1.5866 4.5595 40 1 5.6643 2.0503 5.3598 41 1 0.6280 3.7865 3.5698 42 1 1.4144 3.2795 6.1025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190346567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:49 Heat of formation + Delta-G solvation = 138.011313 kcal Electronic energy + Delta-G solvation = -27302.561860 eV Core-core repulsion = 23673.116556 eV Total energy + Delta-G solvation = -3629.445303 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.31844 -39.22961 -37.56265 -35.33127 -33.76596 -33.26167 -32.14102 -31.55055 -30.50258 -29.12195 -28.08133 -25.09582 -23.85162 -23.42057 -22.80901 -21.57747 -20.62477 -20.55459 -19.41610 -17.90189 -16.97976 -16.22295 -15.68550 -15.31736 -14.97349 -14.93987 -14.69730 -14.16363 -14.05128 -13.85131 -13.67303 -13.41184 -13.13382 -12.52060 -12.37638 -12.16617 -11.73222 -11.52000 -11.30613 -11.11656 -11.03971 -10.87835 -10.79034 -10.78059 -10.60597 -10.56903 -10.16068 -10.03205 -9.97543 -9.92877 -9.68068 -8.98065 -8.46735 -8.29198 -7.89400 -7.26901 -6.14610 -3.60287 1.13917 1.71182 2.63850 2.74632 2.88589 3.28640 3.36193 3.37462 3.88723 4.29951 4.35874 4.52998 4.88331 5.19727 5.23688 5.33017 5.34303 5.34969 5.52079 5.52760 5.55070 5.64585 5.82743 5.86448 5.94165 6.10348 6.12972 6.22043 6.24735 6.30500 6.38217 6.43724 6.47709 6.49813 6.55119 6.67740 6.82319 6.86435 6.99003 7.07475 7.27909 7.48156 7.58545 8.16396 8.76594 9.06411 9.42767 9.60194 10.10048 10.98848 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.007082 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.016474 B = 3952.919538 C = 5314.474195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.141 3.859 5 N -0.550 5.550 6 C -0.276 4.276 7 H 0.082 0.918 8 C 0.019 3.981 9 N -0.897 5.897 10 Si 0.921 3.079 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.636 3.364 15 O -0.486 6.486 16 C -0.079 4.079 17 C -0.032 4.032 18 C -0.134 4.134 19 C -0.107 4.107 20 C -0.123 4.123 21 C 0.147 3.853 22 N -0.100 5.100 23 N -0.226 5.226 24 C -0.039 4.039 25 C -0.028 4.028 26 N -0.303 5.303 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.268 0.732 37 H 0.158 0.842 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.194 0.806 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -8.726 6.645 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.016 3.984 5 N -0.278 5.278 6 C -0.403 4.403 7 H 0.100 0.900 8 C -0.181 4.181 9 N -0.540 5.540 10 Si 0.749 3.251 11 H -0.210 1.210 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.424 3.576 15 O -0.357 6.357 16 C -0.086 4.086 17 C -0.051 4.051 18 C -0.152 4.152 19 C -0.126 4.126 20 C -0.144 4.144 21 C 0.056 3.944 22 N 0.007 4.993 23 N -0.065 5.065 24 C -0.223 4.223 25 C -0.211 4.211 26 N -0.141 5.141 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.176 0.824 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.210 0.790 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.412 -8.280 6.373 10.544 hybrid contribution -0.814 1.024 -0.243 1.331 sum -2.227 -7.255 6.131 9.756 Atomic orbital electron populations 1.21742 0.96425 1.00674 1.01713 1.21472 0.95386 0.97824 1.01223 1.22094 0.97719 0.95046 1.02622 1.20976 0.92532 0.85096 0.99842 1.42394 1.71113 1.10431 1.03901 1.19252 1.21336 1.13523 0.86202 0.90019 1.25052 0.94957 0.99751 0.98359 1.69275 1.28038 1.26088 1.30648 0.86005 0.77117 0.80396 0.81536 1.21001 1.21348 1.20059 1.16688 0.79213 0.82327 0.79382 1.90533 1.44688 1.27028 1.73435 1.20729 0.97998 0.98433 0.91472 1.21626 0.90171 0.91556 1.01716 1.21314 0.99900 1.00531 0.93499 1.20972 0.95117 1.00421 0.96100 1.20668 0.92547 1.01837 0.99382 1.17557 0.79417 1.03736 0.93658 1.44832 1.08414 1.44982 1.01026 1.74887 0.95057 1.12854 1.23654 1.24993 0.99292 1.06973 0.91011 1.24785 0.91367 1.05373 0.99604 1.73933 1.15412 1.20699 1.04096 0.93450 0.93014 0.92875 0.92338 0.92799 0.91994 0.91870 0.92301 0.94234 0.92046 0.82411 0.85615 0.85478 0.84806 0.78954 0.78730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.15 0.37 -1.52 16 2 C -0.12 -1.76 5.93 -26.74 -0.16 -1.92 16 3 C -0.14 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.14 2.88 5.56 -4.04 -0.02 2.86 16 5 N -0.55 -13.67 2.51 -116.00 -0.29 -13.96 16 6 C -0.28 -7.29 9.61 -15.01 -0.14 -7.43 16 7 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 8 C 0.02 0.52 5.23 -17.45 -0.09 0.42 16 9 N -0.90 -24.75 9.10 55.50 0.51 -24.25 16 10 Si 0.92 21.36 29.57 -169.99 -5.03 16.34 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.64 16.47 2.33 -12.48 -0.03 16.44 16 15 O -0.49 -14.30 14.77 5.26 0.08 -14.22 16 16 C -0.08 -1.82 5.12 -104.82 -0.54 -2.35 16 17 C -0.03 -0.66 9.03 -39.18 -0.35 -1.01 16 18 C -0.13 -2.17 10.02 -39.62 -0.40 -2.57 16 19 C -0.11 -1.60 10.03 -39.52 -0.40 -1.99 16 20 C -0.12 -2.12 9.58 -39.45 -0.38 -2.50 16 21 C 0.15 3.11 6.71 -83.29 -0.56 2.55 16 22 N -0.10 -2.12 4.11 32.66 0.13 -1.99 16 23 N -0.23 -4.96 7.52 30.70 0.23 -4.73 16 24 C -0.04 -0.68 12.20 -17.15 -0.21 -0.89 16 25 C -0.03 -0.43 12.20 -17.16 -0.21 -0.64 16 26 N -0.30 -5.63 11.22 30.70 0.34 -5.28 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.13 8.04 -51.92 -0.42 0.71 16 35 H 0.04 0.79 7.62 -51.93 -0.40 0.40 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.16 3.59 6.81 -52.49 -0.36 3.23 16 38 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 40 H 0.13 2.07 7.64 -52.48 -0.40 1.67 16 41 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 42 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -33.09 354.62 -7.72 -40.80 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.77 Total: 5.14 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -3.27 Total: -3.20 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.92 Total: -50.20 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.22 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.09 -7.72 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190346567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.816 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds