Wall clock time and date at job start Tue Mar 31 2020 11:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47176 * 2 1 4 4 C 1.53000 * 109.47327 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47166 * 179.97438 * 4 3 2 6 6 C 1.36868 * 120.00274 * 270.00426 * 5 4 3 7 7 H 1.07997 * 120.00195 * 22.07714 * 6 5 4 8 8 C 1.39041 * 119.99823 * 202.08128 * 6 5 4 9 9 N 1.31365 * 120.00139 * 9.86333 * 8 6 5 10 10 Si 1.86803 * 120.00124 * 189.86471 * 8 6 5 11 11 H 1.48496 * 109.47206 * 89.99538 * 10 8 6 12 12 H 1.48502 * 109.47299 * 210.00339 * 10 8 6 13 13 H 1.48507 * 109.46721 * 329.99879 * 10 8 6 14 14 C 1.34780 * 119.99456 * 90.00545 * 5 4 3 15 15 O 1.21618 * 119.99768 * 241.91526 * 14 5 4 16 16 C 1.47517 * 119.99950 * 61.91733 * 14 5 4 17 17 C 1.39678 * 120.19728 * 51.97570 * 16 14 5 18 18 C 1.37858 * 119.91141 * 179.97438 * 17 16 14 19 19 C 1.38512 * 120.30966 * 0.02562 * 18 17 16 20 20 C 1.38131 * 120.39474 * 359.95865 * 19 18 17 21 21 C 1.38702 * 120.08155 * 0.04346 * 20 19 18 22 22 N 1.39810 * 120.15211 * 180.25242 * 21 20 19 23 23 N 1.28592 * 124.59677 * 186.13192 * 22 21 20 24 24 C 1.31392 * 108.72278 * 179.83170 * 23 22 21 25 25 C 1.39813 * 105.87387 * 0.41598 * 24 23 22 26 26 N 1.28594 * 124.60346 * 6.43745 * 22 21 20 27 27 H 1.09006 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47218 * 299.99793 * 1 2 3 29 29 H 1.09000 * 109.47252 * 60.00534 * 1 2 3 30 30 H 1.09005 * 109.47514 * 240.00085 * 2 1 3 31 31 H 1.09004 * 109.47199 * 120.00405 * 2 1 3 32 32 H 1.08997 * 109.46877 * 59.99999 * 3 2 1 33 33 H 1.09002 * 109.47320 * 299.99746 * 3 2 1 34 34 H 1.09011 * 109.46779 * 60.00185 * 4 3 2 35 35 H 1.08996 * 109.47605 * 300.00379 * 4 3 2 36 36 H 0.97004 * 120.00314 * 184.89914 * 9 8 6 37 37 H 1.07999 * 120.04065 * 359.95908 * 17 16 14 38 38 H 1.07992 * 119.84373 * 180.02562 * 18 17 16 39 39 H 1.08005 * 119.80411 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.95622 * 180.02562 * 20 19 18 41 41 H 1.07996 * 127.06081 * 180.11933 * 24 23 22 42 42 H 1.07998 * 127.06729 * 179.71622 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2868 3.4683 -1.1855 7 1 3.7955 3.1319 -2.0866 8 6 5.1516 4.5562 -1.2299 9 7 5.8955 4.8469 -0.1870 10 14 5.2554 5.6045 -2.7726 11 1 4.2673 6.7097 -2.6875 12 1 6.6226 6.1711 -2.8949 13 1 4.9589 4.7659 -3.9618 14 6 4.2825 3.4597 1.1670 15 8 3.6507 4.4610 1.4450 16 6 5.2941 2.9411 2.1071 17 6 6.5920 2.6737 1.6654 18 6 7.5329 2.1897 2.5491 19 6 7.1975 1.9663 3.8743 20 6 5.9180 2.2267 4.3249 21 6 4.9585 2.7139 3.4498 22 7 3.6644 2.9829 3.9054 23 7 2.6816 3.3275 3.1511 24 6 1.6151 3.4978 3.8994 25 6 2.0223 3.2354 5.2110 26 7 3.2967 2.9248 5.1363 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9336 0.9285 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 6.4456 5.6459 -0.1911 37 1 6.8578 2.8457 0.6328 38 1 8.5361 1.9837 2.2065 39 1 7.9410 1.5866 4.5595 40 1 5.6643 2.0503 5.3598 41 1 0.6280 3.7865 3.5698 42 1 1.4144 3.2795 6.1025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190346567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:48 Heat of formation + Delta-G solvation = 118.485328 kcal Electronic energy + Delta-G solvation = -27303.408570 eV Core-core repulsion = 23673.116556 eV Total energy + Delta-G solvation = -3630.292014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.69487 -40.85687 -39.19669 -36.98360 -35.39849 -34.70431 -33.57522 -33.39329 -31.95913 -30.49879 -29.61257 -26.96250 -25.34203 -24.79963 -24.28499 -23.03071 -22.05257 -21.94925 -21.15531 -19.45085 -18.62851 -17.65666 -17.42247 -16.99610 -16.48984 -16.34323 -16.15922 -15.80402 -15.59299 -15.39266 -15.12014 -14.81136 -14.53292 -13.99116 -13.88331 -13.56759 -13.33597 -13.11304 -12.92247 -12.90502 -12.57229 -12.45223 -12.32199 -12.21517 -12.17565 -12.02844 -11.83512 -11.51473 -11.39900 -11.32377 -11.20683 -10.93196 -10.32190 -9.84598 -9.28983 -9.19835 -8.16667 -5.65525 -0.28092 0.29400 1.26290 1.38355 1.39775 1.45153 1.52423 1.59879 2.14066 2.41881 2.82826 3.15396 3.27074 3.27874 3.93349 3.98807 4.04263 4.08418 4.18168 4.27068 4.32774 4.40284 4.42270 4.51047 4.54054 4.69067 4.73827 4.88468 4.95490 4.98126 5.05551 5.08091 5.13085 5.21354 5.33952 5.36844 5.40200 5.47679 5.48281 5.52860 5.59273 5.81744 6.06629 6.15240 7.03900 7.40158 7.51526 7.70349 8.15173 8.94119 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.007082 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.016474 B = 3952.919538 C = 5314.474195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.123 4.123 4 C 0.141 3.859 5 N -0.565 5.565 6 C -0.291 4.291 7 H 0.085 0.915 8 C -0.030 4.030 9 N -0.915 5.915 10 Si 0.981 3.019 11 H -0.298 1.298 12 H -0.284 1.284 13 H -0.257 1.257 14 C 0.644 3.356 15 O -0.541 6.541 16 C -0.121 4.121 17 C -0.049 4.049 18 C -0.123 4.123 19 C -0.080 4.080 20 C -0.122 4.122 21 C 0.127 3.873 22 N -0.122 5.122 23 N -0.280 5.280 24 C -0.044 4.044 25 C -0.005 4.005 26 N -0.318 5.318 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.260 0.740 37 H 0.128 0.872 38 H 0.163 0.837 39 H 0.182 0.818 40 H 0.154 0.846 41 H 0.221 0.779 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -10.552 8.194 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.163 4.163 4 C 0.017 3.983 5 N -0.294 5.294 6 C -0.418 4.418 7 H 0.103 0.897 8 C -0.228 4.228 9 N -0.559 5.559 10 Si 0.808 3.192 11 H -0.225 1.225 12 H -0.210 1.210 13 H -0.181 1.181 14 C 0.436 3.564 15 O -0.416 6.416 16 C -0.128 4.128 17 C -0.068 4.068 18 C -0.141 4.141 19 C -0.098 4.098 20 C -0.143 4.143 21 C 0.036 3.964 22 N -0.013 5.013 23 N -0.118 5.118 24 C -0.228 4.228 25 C -0.189 4.189 26 N -0.156 5.156 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.181 0.819 39 H 0.199 0.801 40 H 0.171 0.829 41 H 0.237 0.763 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.027 -10.161 7.906 12.915 hybrid contribution -0.997 1.556 -0.607 1.945 sum -2.024 -8.605 7.299 11.464 Atomic orbital electron populations 1.21714 0.94771 1.02228 1.01499 1.21419 0.96783 0.94780 1.02116 1.21947 0.96160 0.97568 1.00588 1.21114 0.93681 0.83317 1.00166 1.42613 1.71457 1.11841 1.03500 1.19538 1.21173 1.14102 0.87005 0.89739 1.25860 0.94974 1.00879 1.01078 1.69453 1.28452 1.25846 1.32149 0.85075 0.76576 0.78417 0.79165 1.22509 1.20969 1.18096 1.17105 0.78536 0.81243 0.79560 1.90467 1.46876 1.29343 1.74869 1.20510 0.98123 1.01997 0.92206 1.21458 0.90628 0.93392 1.01350 1.21661 1.00371 0.98624 0.93483 1.21549 0.94957 0.97316 0.96011 1.21053 0.92673 1.00872 0.99682 1.17911 0.80547 1.04395 0.93565 1.44908 1.08407 1.46519 1.01505 1.74845 0.96594 1.14581 1.25794 1.25645 0.99509 1.05780 0.91837 1.25647 0.90477 1.02302 1.00434 1.73889 1.16892 1.21502 1.03267 0.90949 0.93508 0.92894 0.90889 0.92377 0.94416 0.93398 0.91313 0.94245 0.92940 0.85418 0.81905 0.80082 0.82871 0.76297 0.73512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.11 -3.21 5.93 30.59 0.18 -3.03 16 3 C -0.12 -4.72 5.54 30.59 0.17 -4.55 16 4 C 0.14 6.03 5.56 86.38 0.48 6.51 16 5 N -0.57 -29.60 2.51 -639.15 -1.60 -31.21 16 6 C -0.29 -16.04 9.61 84.10 0.81 -15.24 16 7 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 8 C -0.03 -1.69 5.23 84.96 0.44 -1.24 16 9 N -0.92 -53.04 9.10 21.68 0.20 -52.84 16 10 Si 0.98 45.31 29.57 68.60 2.03 47.34 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 14 C 0.64 35.28 2.33 86.69 0.20 35.48 16 15 O -0.54 -33.89 14.77 -4.09 -0.06 -33.95 16 16 C -0.12 -5.82 5.12 -19.99 -0.10 -5.92 16 17 C -0.05 -2.09 9.03 22.53 0.20 -1.88 16 18 C -0.12 -3.74 10.02 22.24 0.22 -3.52 16 19 C -0.08 -2.09 10.03 22.31 0.22 -1.87 16 20 C -0.12 -3.98 9.58 22.36 0.21 -3.76 16 21 C 0.13 5.44 6.71 38.47 0.26 5.70 16 22 N -0.12 -5.25 4.11 -50.59 -0.21 -5.46 16 23 N -0.28 -12.73 7.52 -56.77 -0.43 -13.15 16 24 C -0.04 -1.51 12.20 85.14 1.04 -0.47 16 25 C 0.00 -0.14 12.20 85.14 1.04 0.90 16 26 N -0.32 -11.49 11.22 -56.77 -0.64 -12.13 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.73 8.04 -2.38 -0.02 2.71 16 35 H 0.04 1.66 7.62 -2.39 -0.02 1.64 16 36 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.13 6.14 6.81 -2.91 -0.02 6.12 16 38 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.15 4.32 7.64 -2.91 -0.02 4.30 16 41 H 0.22 5.84 8.06 -2.91 -0.02 5.82 16 42 H 0.25 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -79.18 354.62 6.40 -72.77 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.02 Total: 24.30 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.10 Total: 4.34 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -2.68 Total: -114.79 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.06 Total: -33.95 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -79.18 6.40 -72.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190346567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.259 kcal (2) G-P(sol) polarization free energy of solvation -79.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds