Wall clock time and date at job start Tue Mar 31 2020 11:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.52993 * 109.47568 * 180.52140 * 3 2 1 5 5 N 1.46496 * 109.47458 * 173.60357 * 4 3 2 6 6 C 1.36883 * 120.00175 * 342.47703 * 5 4 3 7 7 H 1.07998 * 119.99558 * 300.55508 * 6 5 4 8 8 C 1.39013 * 120.00253 * 120.54591 * 6 5 4 9 9 N 1.31392 * 120.00153 * 177.80525 * 8 6 5 10 10 Si 1.86804 * 119.99765 * 357.81080 * 8 6 5 11 11 H 1.48498 * 109.47140 * 93.67501 * 10 8 6 12 12 H 1.48499 * 109.46798 * 213.66906 * 10 8 6 13 13 H 1.48490 * 109.47455 * 333.67195 * 10 8 6 14 14 C 1.34775 * 120.00050 * 162.47086 * 5 4 3 15 15 O 1.21725 * 120.00044 * 179.47550 * 14 5 4 16 16 C 1.46577 * 119.99974 * 359.46970 * 14 5 4 17 17 C 1.36825 * 126.86247 * 232.02412 * 16 14 5 18 18 N 1.33298 * 107.83182 * 179.97438 * 17 16 14 19 19 C 1.30883 * 109.75323 * 359.97438 * 18 17 16 20 20 N 1.34784 * 109.14801 * 0.26338 * 19 18 17 21 21 C 1.40136 * 126.50138 * 179.73174 * 20 19 18 22 22 C 1.39265 * 120.48399 * 238.70382 * 21 20 19 23 23 C 1.38515 * 118.35698 * 179.78852 * 22 21 20 24 24 C 1.38264 * 119.23370 * 0.49156 * 23 22 21 25 25 N 1.31863 * 120.91449 * 359.75457 * 24 23 22 26 26 C 1.31812 * 121.79083 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.46700 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47206 * 299.99964 * 1 2 3 29 29 H 1.08997 * 109.46996 * 60.00020 * 1 2 3 30 30 H 1.08999 * 109.47206 * 240.00036 * 2 1 3 31 31 H 1.09002 * 109.47262 * 119.99611 * 2 1 3 32 32 H 1.08999 * 109.46773 * 60.51951 * 3 2 1 33 33 H 1.09004 * 109.47333 * 300.52796 * 3 2 1 34 34 H 1.09008 * 109.47070 * 53.60879 * 4 3 2 35 35 H 1.08995 * 109.47346 * 293.61252 * 4 3 2 36 36 H 0.96995 * 119.99804 * 185.00667 * 9 8 6 37 37 H 1.08000 * 126.08360 * 359.97360 * 17 16 14 38 38 H 1.08004 * 125.42273 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.81968 * 0.02562 * 22 21 20 40 40 H 1.08005 * 120.37833 * 180.22327 * 23 22 21 41 41 H 1.08006 * 119.54102 * 179.76691 * 24 23 22 42 42 H 1.08006 * 119.66419 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5699 1.4426 -0.0131 5 7 4.0569 2.8157 -0.1670 6 6 3.2153 3.7931 -0.6254 7 1 2.7542 3.6964 -1.5972 8 6 2.9540 4.9099 0.1599 9 7 2.1805 5.8684 -0.2976 10 14 3.7028 5.0481 1.8658 11 1 4.9771 5.8063 1.7871 12 1 2.7585 5.7591 2.7647 13 1 3.9678 3.6888 2.4016 14 6 5.3336 3.1166 0.1429 15 8 5.7409 4.2555 0.0059 16 6 6.2315 2.0725 0.6449 17 6 6.9935 2.1215 1.7803 18 7 7.6621 0.9720 1.8730 19 6 7.3618 0.2024 0.8578 20 7 6.4812 0.8425 0.0632 21 6 5.9224 0.3535 -1.1253 22 6 6.0942 1.0433 -2.3229 23 6 5.5267 0.5179 -3.4720 24 6 4.8054 -0.6589 -3.3916 25 7 4.6569 -1.2852 -2.2407 26 6 5.1848 -0.8224 -1.1251 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6843 1.9536 0.8946 33 1 1.6690 1.9591 -0.8852 34 1 3.9262 0.8354 -0.8454 35 1 3.9414 1.0282 0.9240 36 1 2.0564 6.6798 0.2193 37 1 7.0442 2.9448 2.4773 38 1 7.7594 -0.7863 0.6827 39 1 6.6593 1.9631 -2.3555 40 1 5.6426 1.0240 -4.4191 41 1 4.3575 -1.0711 -4.2839 42 1 5.0413 -1.3632 -0.2013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199431372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:16 Heat of formation + Delta-G solvation = 85.497037 kcal Electronic energy + Delta-G solvation = -27547.815073 eV Core-core repulsion = 23916.092579 eV Total energy + Delta-G solvation = -3631.722493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.39107 -40.15546 -38.71093 -35.86643 -34.60671 -33.62266 -32.36451 -32.07570 -30.15049 -29.43205 -28.38361 -25.51147 -24.16585 -23.95974 -23.11078 -21.74878 -21.17282 -20.42993 -19.60078 -18.36547 -17.18027 -16.88251 -16.67264 -15.86334 -15.61061 -15.09491 -14.77890 -14.66804 -14.25336 -13.98235 -13.76977 -13.59010 -13.39486 -13.30925 -13.20433 -12.92719 -12.67024 -12.39344 -12.31591 -11.63319 -11.21550 -11.00216 -10.82182 -10.62800 -10.56567 -10.40817 -10.13530 -10.09770 -10.03971 -9.96221 -9.63025 -9.02214 -8.92800 -8.71485 -8.31445 -7.54987 -6.28077 -4.26194 0.62476 1.00374 1.83432 2.53190 3.10446 3.30373 3.35492 3.48460 3.50146 3.77615 4.18114 4.26703 4.37949 4.51339 4.65685 4.68397 4.80945 4.84892 5.06852 5.22609 5.29230 5.32433 5.42730 5.45416 5.58479 5.67463 5.74433 5.83988 5.86103 5.91313 6.05296 6.16708 6.17729 6.20793 6.27250 6.30057 6.44734 6.72680 6.77657 7.01434 7.22945 7.64748 7.72596 7.94173 8.06148 8.58616 8.70931 9.24660 9.61655 10.75449 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.007706 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.752395 B = 3632.787800 C = 4828.110077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.095 3.905 5 N -0.454 5.454 6 C -0.333 4.333 7 H 0.094 0.906 8 C 0.091 3.909 9 N -0.871 5.871 10 Si 0.894 3.106 11 H -0.260 1.260 12 H -0.297 1.297 13 H -0.273 1.273 14 C 0.533 3.467 15 O -0.529 6.529 16 C -0.040 4.040 17 C 0.026 3.974 18 N -0.487 5.487 19 C 0.192 3.808 20 N -0.398 5.398 21 C 0.069 3.931 22 C -0.054 4.054 23 C -0.151 4.151 24 C 0.105 3.895 25 N -0.467 5.467 26 C 0.118 3.882 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.274 0.726 37 H 0.177 0.823 38 H 0.209 0.791 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -15.326 -3.422 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.028 4.028 5 N -0.177 5.177 6 C -0.460 4.460 7 H 0.112 0.888 8 C -0.118 4.118 9 N -0.505 5.505 10 Si 0.722 3.278 11 H -0.185 1.185 12 H -0.225 1.225 13 H -0.198 1.198 14 C 0.319 3.681 15 O -0.408 6.408 16 C -0.154 4.154 17 C -0.124 4.124 18 N -0.204 5.204 19 C -0.088 4.088 20 N -0.081 5.081 21 C -0.024 4.024 22 C -0.081 4.081 23 C -0.171 4.171 24 C -0.052 4.052 25 N -0.175 5.175 26 C -0.042 4.042 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.194 0.806 38 H 0.226 0.774 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.181 0.819 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.778 -15.572 -2.911 16.286 hybrid contribution 0.307 1.243 0.299 1.315 sum 4.085 -14.329 -2.612 15.127 Atomic orbital electron populations 1.21716 0.95985 1.00749 1.02031 1.21512 0.95876 0.97448 1.01197 1.21605 0.93832 0.95061 1.04284 1.22024 0.95928 0.85943 0.98886 1.43600 1.07466 1.08123 1.58477 1.18559 1.25109 0.99526 1.02769 0.88807 1.25449 0.92683 0.95386 0.98273 1.69631 1.35018 1.06459 1.39424 0.86482 0.79607 0.78993 0.82689 1.18528 1.22534 1.19812 1.17245 0.81960 0.86698 0.82166 1.90729 1.75296 1.20197 1.54574 1.22002 1.06644 0.87653 0.99117 1.22461 0.96127 0.96950 0.96888 1.70108 1.24685 1.03702 1.21916 1.25107 0.94793 1.00214 0.88679 1.42864 1.33957 1.13723 1.17593 1.18685 1.00554 0.97653 0.85499 1.21719 0.96556 0.99049 0.90812 1.22126 0.98446 0.97246 0.99302 1.22913 0.94431 0.91804 0.96012 1.67798 1.18802 1.32574 0.98362 1.22782 0.91381 0.92351 0.97649 0.93355 0.92847 0.92657 0.92341 0.92863 0.91741 0.89914 0.93152 0.93761 0.91609 0.80608 0.77441 0.83982 0.83679 0.81911 0.82107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.11 -2.02 4.50 -26.73 -0.12 -2.14 16 4 C 0.10 1.82 4.27 -4.05 -0.02 1.81 16 5 N -0.45 -10.66 2.34 -116.34 -0.27 -10.93 16 6 C -0.33 -8.97 7.53 -15.01 -0.11 -9.08 16 7 H 0.09 2.68 7.77 -52.49 -0.41 2.27 16 8 C 0.09 2.59 5.26 -17.45 -0.09 2.49 16 9 N -0.87 -25.62 13.95 55.50 0.77 -24.85 16 10 Si 0.89 23.49 24.90 -169.99 -4.23 19.26 16 11 H -0.26 -7.15 6.91 56.52 0.39 -6.76 16 12 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.27 -6.97 6.95 56.52 0.39 -6.58 16 14 C 0.53 12.72 5.02 -12.90 -0.06 12.66 16 15 O -0.53 -14.60 14.17 5.17 0.07 -14.53 16 16 C -0.04 -0.79 5.29 -82.08 -0.43 -1.23 16 17 C 0.03 0.49 11.86 -17.43 -0.21 0.28 16 18 N -0.49 -8.21 11.20 -14.32 -0.16 -8.37 16 19 C 0.19 2.68 12.36 -90.29 -1.12 1.57 16 20 N -0.40 -6.28 2.67 -58.52 -0.16 -6.44 16 21 C 0.07 0.97 3.24 -83.46 -0.27 0.70 16 22 C -0.05 -0.75 9.60 -39.10 -0.38 -1.13 16 23 C -0.15 -1.66 10.10 -39.47 -0.40 -2.06 16 24 C 0.10 1.08 11.18 -17.53 -0.20 0.89 16 25 N -0.47 -5.56 10.35 -13.10 -0.14 -5.69 16 26 C 0.12 1.43 8.89 -17.35 -0.15 1.28 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.67 6.96 -51.93 -0.36 1.31 16 34 H 0.05 0.88 3.69 -51.92 -0.19 0.69 16 35 H 0.04 0.84 7.36 -51.93 -0.38 0.46 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.18 3.23 8.06 -52.49 -0.42 2.80 16 38 H 0.21 1.92 8.06 -52.48 -0.42 1.49 16 39 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -33.39 346.78 -7.81 -41.20 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.57 Total: 2.56 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -3.35 Total: 2.57 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.05 Total: -56.28 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.07 Total: -14.53 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.23 Total: 19.26 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.39 -7.81 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199431372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.694 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds