Wall clock time and date at job start Tue Mar 31 2020 11:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.52993 * 109.47568 * 180.52140 * 3 2 1 5 5 N 1.46496 * 109.47458 * 173.60357 * 4 3 2 6 6 C 1.36883 * 120.00175 * 342.47703 * 5 4 3 7 7 H 1.07998 * 119.99558 * 300.55508 * 6 5 4 8 8 C 1.39013 * 120.00253 * 120.54591 * 6 5 4 9 9 N 1.31392 * 120.00153 * 177.80525 * 8 6 5 10 10 Si 1.86804 * 119.99765 * 357.81080 * 8 6 5 11 11 H 1.48498 * 109.47140 * 93.67501 * 10 8 6 12 12 H 1.48499 * 109.46798 * 213.66906 * 10 8 6 13 13 H 1.48490 * 109.47455 * 333.67195 * 10 8 6 14 14 C 1.34775 * 120.00050 * 162.47086 * 5 4 3 15 15 O 1.21725 * 120.00044 * 179.47550 * 14 5 4 16 16 C 1.46577 * 119.99974 * 359.46970 * 14 5 4 17 17 C 1.36825 * 126.86247 * 232.02412 * 16 14 5 18 18 N 1.33298 * 107.83182 * 179.97438 * 17 16 14 19 19 C 1.30883 * 109.75323 * 359.97438 * 18 17 16 20 20 N 1.34784 * 109.14801 * 0.26338 * 19 18 17 21 21 C 1.40136 * 126.50138 * 179.73174 * 20 19 18 22 22 C 1.39265 * 120.48399 * 238.70382 * 21 20 19 23 23 C 1.38515 * 118.35698 * 179.78852 * 22 21 20 24 24 C 1.38264 * 119.23370 * 0.49156 * 23 22 21 25 25 N 1.31863 * 120.91449 * 359.75457 * 24 23 22 26 26 C 1.31812 * 121.79083 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.46700 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47206 * 299.99964 * 1 2 3 29 29 H 1.08997 * 109.46996 * 60.00020 * 1 2 3 30 30 H 1.08999 * 109.47206 * 240.00036 * 2 1 3 31 31 H 1.09002 * 109.47262 * 119.99611 * 2 1 3 32 32 H 1.08999 * 109.46773 * 60.51951 * 3 2 1 33 33 H 1.09004 * 109.47333 * 300.52796 * 3 2 1 34 34 H 1.09008 * 109.47070 * 53.60879 * 4 3 2 35 35 H 1.08995 * 109.47346 * 293.61252 * 4 3 2 36 36 H 0.96995 * 119.99804 * 185.00667 * 9 8 6 37 37 H 1.08000 * 126.08360 * 359.97360 * 17 16 14 38 38 H 1.08004 * 125.42273 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.81968 * 0.02562 * 22 21 20 40 40 H 1.08005 * 120.37833 * 180.22327 * 23 22 21 41 41 H 1.08006 * 119.54102 * 179.76691 * 24 23 22 42 42 H 1.08006 * 119.66419 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5699 1.4426 -0.0131 5 7 4.0569 2.8157 -0.1670 6 6 3.2153 3.7931 -0.6254 7 1 2.7542 3.6964 -1.5972 8 6 2.9540 4.9099 0.1599 9 7 2.1805 5.8684 -0.2976 10 14 3.7028 5.0481 1.8658 11 1 4.9771 5.8063 1.7871 12 1 2.7585 5.7591 2.7647 13 1 3.9678 3.6888 2.4016 14 6 5.3336 3.1166 0.1429 15 8 5.7409 4.2555 0.0059 16 6 6.2315 2.0725 0.6449 17 6 6.9935 2.1215 1.7803 18 7 7.6621 0.9720 1.8730 19 6 7.3618 0.2024 0.8578 20 7 6.4812 0.8425 0.0632 21 6 5.9224 0.3535 -1.1253 22 6 6.0942 1.0433 -2.3229 23 6 5.5267 0.5179 -3.4720 24 6 4.8054 -0.6589 -3.3916 25 7 4.6569 -1.2852 -2.2407 26 6 5.1848 -0.8224 -1.1251 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6843 1.9536 0.8946 33 1 1.6690 1.9591 -0.8852 34 1 3.9262 0.8354 -0.8454 35 1 3.9414 1.0282 0.9240 36 1 2.0564 6.6798 0.2193 37 1 7.0442 2.9448 2.4773 38 1 7.7594 -0.7863 0.6827 39 1 6.6593 1.9631 -2.3555 40 1 5.6426 1.0240 -4.4191 41 1 4.3575 -1.0711 -4.2839 42 1 5.0413 -1.3632 -0.2013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199431372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:16 Heat of formation + Delta-G solvation = 64.879094 kcal Electronic energy + Delta-G solvation = -27548.709134 eV Core-core repulsion = 23916.092579 eV Total energy + Delta-G solvation = -3632.616554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.67469 -41.14554 -40.55532 -37.54491 -35.75202 -35.25545 -34.09412 -33.30757 -31.42372 -30.70826 -29.83239 -27.40721 -25.29061 -24.93116 -24.47061 -23.32030 -22.41392 -21.82154 -21.13636 -19.89664 -18.62779 -18.10558 -17.73712 -17.51843 -17.29044 -16.73784 -16.09078 -16.00951 -15.60538 -15.46349 -15.05260 -15.00228 -14.85547 -14.61876 -14.45395 -14.30504 -14.24710 -14.03820 -13.30927 -13.26718 -12.96079 -12.69508 -12.46670 -12.18587 -12.06584 -11.83667 -11.74268 -11.47328 -11.43679 -11.04836 -10.95740 -10.76175 -10.62439 -10.02247 -9.77867 -9.41768 -8.47613 -6.44610 -0.35745 0.04332 0.45015 1.15166 1.22882 1.29312 1.33435 1.79304 2.01285 2.23313 2.53764 2.59417 2.89398 3.37077 3.47308 3.53492 3.64541 3.74593 3.87452 3.92666 4.00776 4.05376 4.27275 4.33248 4.38401 4.40520 4.45402 4.57813 4.70802 4.74953 4.92553 4.94408 4.98332 5.01181 5.11900 5.24988 5.33394 5.39961 5.46717 5.54889 5.62708 5.85446 6.09287 6.55966 6.72257 6.74443 6.76856 7.11337 7.64176 8.58860 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.007706 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.752395 B = 3632.787800 C = 4828.110077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.107 4.107 4 C 0.100 3.900 5 N -0.464 5.464 6 C -0.317 4.317 7 H 0.070 0.930 8 C 0.050 3.950 9 N -0.908 5.908 10 Si 0.935 3.065 11 H -0.284 1.284 12 H -0.287 1.287 13 H -0.264 1.264 14 C 0.536 3.464 15 O -0.579 6.579 16 C -0.076 4.076 17 C 0.026 3.974 18 N -0.506 5.506 19 C 0.228 3.772 20 N -0.391 5.391 21 C 0.045 3.955 22 C -0.076 4.076 23 C -0.149 4.149 24 C 0.115 3.885 25 N -0.472 5.472 26 C 0.124 3.876 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.275 0.725 37 H 0.171 0.829 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.168 0.832 41 H 0.201 0.799 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -19.539 -3.651 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.145 4.145 4 C -0.021 4.021 5 N -0.186 5.186 6 C -0.444 4.444 7 H 0.088 0.912 8 C -0.155 4.155 9 N -0.545 5.545 10 Si 0.763 3.237 11 H -0.210 1.210 12 H -0.214 1.214 13 H -0.188 1.188 14 C 0.325 3.675 15 O -0.462 6.462 16 C -0.191 4.191 17 C -0.125 4.125 18 N -0.223 5.223 19 C -0.052 4.052 20 N -0.073 5.073 21 C -0.047 4.047 22 C -0.103 4.103 23 C -0.169 4.169 24 C -0.041 4.041 25 N -0.180 5.180 26 C -0.034 4.034 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.188 0.812 38 H 0.278 0.722 39 H 0.136 0.864 40 H 0.185 0.815 41 H 0.217 0.783 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.994 -19.834 -3.145 20.475 hybrid contribution 0.325 2.407 0.198 2.437 sum 4.320 -17.427 -2.946 18.194 Atomic orbital electron populations 1.21718 0.94981 1.02276 1.01467 1.21435 0.96701 0.94276 1.02469 1.21568 0.93243 0.97729 1.01912 1.22164 0.96351 0.83464 1.00152 1.43751 1.07270 1.09174 1.58386 1.18350 1.24219 1.00213 1.01653 0.91222 1.25950 0.93393 0.95685 1.00476 1.69689 1.36992 1.07196 1.40637 0.85841 0.78012 0.79069 0.80814 1.21020 1.21437 1.18803 1.17648 0.82280 0.86940 0.80661 1.90684 1.76310 1.22714 1.56449 1.21274 1.08015 0.89145 1.00660 1.22513 0.95749 0.97704 0.96496 1.70162 1.25223 1.03321 1.23582 1.26170 0.91787 1.00863 0.86424 1.42842 1.34042 1.12276 1.18108 1.18871 1.02379 0.98820 0.84650 1.21759 0.97527 0.98749 0.92304 1.22423 0.97646 0.97552 0.99286 1.23536 0.92918 0.90875 0.96793 1.67924 1.18806 1.32612 0.98665 1.23068 0.90288 0.91400 0.98669 0.90717 0.93399 0.93385 0.91226 0.91227 0.93962 0.92496 0.90848 0.92983 0.91501 0.81157 0.72182 0.86441 0.81493 0.78275 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.11 -2.87 5.93 30.60 0.18 -2.69 16 3 C -0.11 -3.85 4.50 30.59 0.14 -3.71 16 4 C 0.10 3.75 4.27 86.38 0.37 4.12 16 5 N -0.46 -22.11 2.34 -640.18 -1.50 -23.60 16 6 C -0.32 -17.66 7.53 84.09 0.63 -17.02 16 7 H 0.07 4.17 7.77 -2.91 -0.02 4.15 16 8 C 0.05 2.92 5.26 84.94 0.45 3.37 16 9 N -0.91 -55.50 13.95 21.68 0.30 -55.20 16 10 Si 0.93 49.97 24.90 68.60 1.71 51.68 16 11 H -0.28 -16.16 6.91 99.48 0.69 -15.48 16 12 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 13 H -0.26 -13.45 6.95 99.48 0.69 -12.76 16 14 C 0.54 26.16 5.02 86.42 0.43 26.59 16 15 O -0.58 -33.34 14.17 -4.43 -0.06 -33.40 16 16 C -0.08 -3.02 5.29 39.96 0.21 -2.81 16 17 C 0.03 0.98 11.86 84.14 1.00 1.98 16 18 N -0.51 -15.91 11.20 -199.22 -2.23 -18.14 16 19 C 0.23 5.55 12.36 180.23 2.23 7.78 16 20 N -0.39 -11.51 2.67 -339.05 -0.91 -12.42 16 21 C 0.05 1.16 3.24 38.20 0.12 1.28 16 22 C -0.08 -2.03 9.60 22.58 0.22 -1.82 16 23 C -0.15 -2.92 10.10 22.34 0.23 -2.69 16 24 C 0.11 1.92 11.18 84.69 0.95 2.87 16 25 N -0.47 -9.21 10.35 -195.34 -2.02 -11.23 16 26 C 0.12 2.54 8.89 84.83 0.75 3.30 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 2.33 6.96 -2.38 -0.02 2.32 16 34 H 0.07 2.41 3.69 -2.38 -0.01 2.40 16 35 H 0.05 1.89 7.36 -2.39 -0.02 1.87 16 36 H 0.28 15.94 8.31 -92.71 -0.77 15.16 16 37 H 0.17 6.37 8.06 -2.91 -0.02 6.35 16 38 H 0.26 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -76.75 346.78 4.90 -71.85 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.99 Total: 12.68 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 8.62 Total: 17.79 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -6.35 Total: -120.60 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.06 Total: -33.40 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.71 Total: 51.68 kcal Total: -76.75 4.90 -71.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199431372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.725 kcal (2) G-P(sol) polarization free energy of solvation -76.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds