Wall clock time and date at job start Tue Mar 31 2020 11:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50693 * 120.00253 * 2 1 4 4 C 1.30999 * 119.99599 * 179.97438 * 2 1 3 5 5 C 1.50703 * 120.00321 * 7.54461 * 4 2 1 6 6 N 1.46904 * 109.47041 * 127.07265 * 5 4 2 7 7 C 1.47895 * 111.00102 * 189.99963 * 6 5 4 8 8 C 1.53989 * 107.06122 * 145.84472 * 7 6 5 9 9 H 1.08995 * 110.31029 * 117.78989 * 8 7 6 10 10 N 1.46497 * 110.31436 * 239.86146 * 8 7 6 11 11 C 1.34778 * 120.00107 * 273.54595 * 10 8 7 12 12 O 1.21282 * 119.99782 * 0.02562 * 11 10 8 13 13 C 1.50693 * 120.00042 * 179.97438 * 11 10 8 14 14 S 1.80995 * 109.47169 * 179.97438 * 13 11 10 15 15 C 1.76203 * 100.00406 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99490 * 359.97438 * 15 14 13 17 17 C 1.38791 * 120.00452 * 180.02562 * 15 14 13 18 18 N 1.31636 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00358 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46710 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47204 * 119.99528 * 19 17 15 22 22 H 1.48498 * 109.47093 * 240.00046 * 19 17 15 23 23 C 1.54601 * 105.13641 * 358.77930 * 8 7 6 24 24 H 1.08998 * 110.72181 * 96.39872 * 23 8 7 25 25 O 1.42903 * 110.72187 * 219.68035 * 23 8 7 26 26 C 1.48531 * 111.00295 * 307.39900 * 6 5 4 27 27 H 1.09000 * 109.47274 * 185.46035 * 1 2 3 28 28 H 1.09008 * 109.46902 * 305.45822 * 1 2 3 29 29 H 1.08993 * 109.47157 * 65.45538 * 1 2 3 30 30 H 1.09003 * 109.46864 * 270.00474 * 3 2 1 31 31 H 1.09007 * 109.47237 * 29.99489 * 3 2 1 32 32 H 1.08991 * 109.47253 * 150.00142 * 3 2 1 33 33 H 1.08003 * 120.00050 * 187.54381 * 4 2 1 34 34 H 1.08998 * 109.47025 * 7.07649 * 5 4 2 35 35 H 1.08996 * 109.47379 * 247.07535 * 5 4 2 36 36 H 1.09010 * 109.91460 * 26.49345 * 7 6 5 37 37 H 1.09002 * 109.92136 * 265.20070 * 7 6 5 38 38 H 0.96997 * 119.99683 * 93.53838 * 10 8 7 39 39 H 1.09002 * 109.47699 * 300.00436 * 13 11 10 40 40 H 1.09003 * 109.47310 * 60.00114 * 13 11 10 41 41 H 0.97000 * 119.99839 * 179.97438 * 18 17 15 42 42 H 0.96703 * 114.00114 * 179.97438 * 25 23 8 43 43 H 1.09000 * 110.66548 * 318.71719 * 26 6 5 44 44 H 1.09004 * 110.66491 * 81.67088 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4182 -2.4341 -0.1703 6 7 2.0222 -3.2035 -1.2663 7 6 1.1822 -4.3675 -1.6224 8 6 1.3194 -4.5757 -3.1420 9 1 1.7608 -5.5499 -3.3520 10 7 0.0113 -4.4605 -3.7913 11 6 -0.7920 -5.5387 -3.8846 12 8 -0.4321 -6.6042 -3.4306 13 6 -2.1379 -5.4201 -4.5521 14 16 -2.9709 -7.0266 -4.5200 15 6 -4.4729 -6.6090 -5.3413 16 1 -4.6367 -5.5988 -5.6863 17 6 -5.4457 -7.5779 -5.5439 18 7 -5.2461 -8.8091 -5.1229 19 14 -7.0383 -7.1350 -6.4140 20 1 -7.0160 -5.6974 -6.7856 21 1 -7.1786 -7.9606 -7.6404 22 1 -8.1860 -7.3949 -5.5083 23 6 2.2579 -3.4445 -3.6213 24 1 3.2857 -3.8004 -3.6929 25 8 1.8155 -2.9171 -4.8736 26 6 2.1219 -2.3834 -2.5006 27 1 -0.3634 -1.0230 0.0978 28 1 -0.3633 0.5962 0.8371 29 1 -0.3633 0.4269 -0.9347 30 1 2.4422 1.6197 -1.0277 31 1 1.6715 2.0648 0.5138 32 1 3.2129 1.1747 0.5138 33 1 3.2350 -1.1386 0.1233 34 1 0.3740 -2.2270 -0.4041 35 1 1.4764 -3.0101 0.7532 36 1 0.1415 -4.1663 -1.3677 37 1 1.5320 -5.2538 -1.0931 38 1 -0.2767 -3.6083 -4.1540 39 1 -2.7435 -4.6857 -4.0210 40 1 -2.0040 -5.1012 -5.5858 41 1 -5.9262 -9.4862 -5.2642 42 1 2.3704 -2.2039 -5.2180 43 1 1.2194 -1.7887 -2.6413 44 1 3.0023 -1.7416 -2.4660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219216641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:32 Heat of formation + Delta-G solvation = -59.505015 kcal Electronic energy + Delta-G solvation = -23864.648943 eV Core-core repulsion = 20329.789890 eV Total energy + Delta-G solvation = -3534.859054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28408 -38.55788 -37.27125 -35.77454 -33.89556 -32.40938 -31.08530 -29.32037 -28.41664 -28.17378 -27.11060 -25.45074 -24.07751 -21.44040 -21.20469 -20.22350 -18.20640 -17.91959 -17.62390 -16.77685 -16.06494 -15.85739 -15.40159 -15.16161 -14.88487 -14.78532 -14.43457 -14.25735 -14.03117 -13.82383 -13.39117 -13.15825 -12.92609 -12.73968 -12.62892 -12.55486 -12.33081 -12.02407 -11.92462 -11.74403 -11.61532 -11.22212 -11.05778 -10.99798 -10.94715 -10.73155 -10.27855 -9.78326 -9.38689 -9.09146 -9.05917 -8.96205 -8.59426 -8.20526 -6.47387 -6.19985 -3.90022 1.76301 3.01292 3.12099 3.22693 3.27846 3.32483 3.50776 3.85241 4.03766 4.22188 4.27210 4.36353 4.51918 4.60281 4.84783 4.87032 5.11356 5.12595 5.14523 5.15281 5.18475 5.26299 5.29403 5.33286 5.40603 5.44222 5.46048 5.57383 5.64349 5.66501 5.69049 5.78376 5.93036 5.97586 6.18617 6.29579 6.39960 6.48940 6.70655 6.76656 7.32057 7.61847 7.80838 8.37455 8.66764 9.25491 10.87508 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.002654 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.520632 B =10545.811784 C =11146.583884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C -0.116 4.116 4 C -0.159 4.159 5 C 0.067 3.933 6 N -0.507 5.507 7 C 0.024 3.976 8 C 0.147 3.853 9 H 0.102 0.898 10 N -0.720 5.720 11 C 0.533 3.467 12 O -0.519 6.519 13 C -0.152 4.152 14 S -0.060 6.060 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.092 3.908 24 H 0.083 0.917 25 O -0.554 6.554 26 C 0.008 3.992 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.267 0.733 42 H 0.381 0.619 43 H 0.054 0.946 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.172 20.421 7.984 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.131 4.131 3 C -0.172 4.172 4 C -0.177 4.177 5 C -0.060 4.060 6 N -0.232 5.232 7 C -0.105 4.105 8 C 0.041 3.959 9 H 0.120 0.880 10 N -0.375 5.375 11 C 0.319 3.681 12 O -0.394 6.394 13 C -0.302 4.302 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.032 3.968 24 H 0.101 0.899 25 O -0.358 6.358 26 C -0.121 4.121 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.229 0.771 43 H 0.073 0.927 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.738 17.827 9.013 26.714 hybrid contribution -1.875 2.648 -1.447 3.552 sum 15.863 20.474 7.566 26.983 Atomic orbital electron populations 1.21059 0.92436 1.03088 1.02183 1.21644 0.95852 0.95111 1.00463 1.20796 0.99555 0.94863 1.02022 1.22522 0.99897 0.92844 1.02486 1.21542 0.96133 0.92837 0.95487 1.64812 1.46527 1.06839 1.05039 1.23463 0.96859 0.94826 0.95373 1.21682 0.84047 0.99298 0.90918 0.87951 1.45824 1.17116 1.13283 1.61252 1.20333 0.85822 0.83351 0.78609 1.90695 1.74447 1.27409 1.46812 1.23512 0.95858 1.08006 1.02853 1.85375 1.16596 1.04402 1.76995 1.22910 1.02886 0.98904 1.43506 0.90915 1.24997 0.98626 0.94472 0.95562 1.70033 1.34567 1.01709 1.44006 0.86115 0.81734 0.78575 0.79060 1.19632 1.20567 1.20586 1.22993 0.97776 0.93010 0.83040 0.89937 1.86503 1.56618 1.56381 1.36304 1.23873 1.01842 0.96154 0.90196 0.91055 0.91436 0.91717 0.91454 0.92040 0.91901 0.86808 0.92907 0.89819 0.92324 0.88888 0.76159 0.89423 0.89182 0.92265 0.77133 0.92741 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.79 36.01 0.35 -0.59 16 2 C -0.13 -0.95 6.05 -101.07 -0.61 -1.56 16 3 C -0.12 -0.67 10.04 36.00 0.36 -0.31 16 4 C -0.16 -1.25 8.04 -36.02 -0.29 -1.54 16 5 C 0.07 0.60 5.14 -4.97 -0.03 0.58 16 6 N -0.51 -4.95 5.39 -231.90 -1.25 -6.20 16 7 C 0.02 0.28 6.49 -2.76 -0.02 0.26 16 8 C 0.15 1.85 3.25 -66.57 -0.22 1.63 16 9 H 0.10 1.46 7.64 -51.93 -0.40 1.06 16 10 N -0.72 -10.42 4.66 -52.50 -0.24 -10.66 16 11 C 0.53 10.27 7.84 -10.99 -0.09 10.18 16 12 O -0.52 -11.90 15.56 5.56 0.09 -11.81 16 13 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 16 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 19 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.09 0.85 4.35 -24.87 -0.11 0.74 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 O -0.55 -4.95 12.05 -35.23 -0.42 -5.37 16 26 C 0.01 0.07 5.30 -1.90 -0.01 0.06 16 27 H 0.07 0.56 5.24 -51.93 -0.27 0.28 16 28 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.32 8.12 -51.92 -0.42 -0.10 16 32 H 0.06 0.33 8.03 -51.93 -0.42 -0.08 16 33 H 0.11 0.87 8.01 -52.48 -0.42 0.45 16 34 H 0.05 0.50 4.94 -51.93 -0.26 0.24 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.76 7.35 -51.92 -0.38 0.38 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.40 5.17 7.76 -40.82 -0.32 4.85 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.38 1.67 9.12 45.56 0.42 2.09 16 43 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 44 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -34.63 373.14 -9.16 -43.79 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.22 Total: 4.19 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.23 Total: -6.61 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.76 Total: -42.53 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.34 Total: -17.18 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.63 -9.16 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.712 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds