Wall clock time and date at job start Tue Mar 31 2020 11:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46730 * 2 1 4 4 C 1.53003 * 109.47119 * 240.00354 * 2 1 3 5 5 C 1.50700 * 109.47602 * 120.00220 * 2 1 3 6 6 C 1.38335 * 119.86891 * 59.99829 * 5 2 1 7 7 C 1.38002 * 120.12627 * 179.97438 * 6 5 2 8 8 C 1.39407 * 119.86820 * 0.02562 * 7 6 5 9 9 C 1.48268 * 120.12418 * 179.97438 * 8 7 6 10 10 C 1.39304 * 120.13845 * 310.00562 * 9 8 7 11 11 C 1.37968 * 119.97367 * 179.97438 * 10 9 8 12 12 C 1.38683 * 120.24179 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.86045 * 179.97438 * 12 11 10 14 14 C 1.38336 * 120.27585 * 359.95658 * 12 11 10 15 15 C 1.38713 * 120.02192 * 0.02562 * 14 12 11 16 16 O 1.35662 * 120.12094 * 179.97438 * 15 14 12 17 17 C 1.34817 * 116.99639 * 354.40853 * 16 15 14 18 18 H 1.07995 * 120.00323 * 5.05998 * 17 16 15 19 19 C 1.38651 * 119.99878 * 185.06521 * 17 16 15 20 20 N 1.31554 * 120.00258 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99814 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47011 * 89.99941 * 21 19 17 23 23 H 1.48496 * 109.47076 * 210.00271 * 21 19 17 24 24 H 1.48501 * 109.46958 * 330.00305 * 21 19 17 25 25 C 1.39394 * 119.74749 * 0.27708 * 8 7 6 26 26 C 1.38006 * 119.86988 * 359.44129 * 25 8 7 27 27 H 1.09002 * 109.47191 * 299.99340 * 1 2 3 28 28 H 1.08996 * 109.47320 * 59.99937 * 1 2 3 29 29 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47055 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47270 * 300.00094 * 3 2 1 32 32 H 1.08998 * 109.47215 * 60.00429 * 3 2 1 33 33 H 1.08997 * 109.47052 * 299.99842 * 4 2 1 34 34 H 1.09005 * 109.46684 * 59.99587 * 4 2 1 35 35 H 1.09001 * 109.47269 * 179.97438 * 4 2 1 36 36 H 1.08000 * 119.94148 * 359.96274 * 6 5 2 37 37 H 1.07991 * 120.06404 * 180.02562 * 7 6 5 38 38 H 1.08009 * 120.01514 * 359.95189 * 10 9 8 39 39 H 1.07994 * 119.87834 * 179.97438 * 11 10 9 40 40 H 1.08001 * 119.98938 * 179.74863 * 14 12 11 41 41 H 0.97001 * 119.99913 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.06395 * 179.70015 * 25 8 7 43 43 H 1.08005 * 119.93543 * 180.30110 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6966 -2.0349 1.4466 7 6 2.1543 -2.6908 2.5713 8 6 2.9560 -2.0158 3.4906 9 6 3.4503 -2.7148 4.7011 10 6 2.5650 -3.4236 5.5101 11 6 3.0287 -4.0732 6.6354 12 6 4.3747 -4.0233 6.9659 13 9 4.8204 -4.6618 8.0699 14 6 5.2628 -3.3227 6.1696 15 6 4.8088 -2.6658 5.0354 16 8 5.6779 -1.9778 4.2533 17 6 6.9477 -1.8738 4.6944 18 1 7.2529 -2.3954 5.5894 19 6 7.8616 -1.0970 3.9989 20 7 9.1008 -0.9959 4.4290 21 14 7.3338 -0.1951 2.4505 22 1 6.8347 1.1563 2.8106 23 1 8.4942 -0.0660 1.5330 24 1 6.2528 -0.9588 1.7770 25 6 3.2858 -0.6794 3.2706 26 6 2.8272 -0.0355 2.1394 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.0750 -2.5566 0.7340 37 1 1.8918 -3.7248 2.7388 38 1 1.5158 -3.4642 5.2566 39 1 2.3409 -4.6218 7.2617 40 1 6.3094 -3.2835 6.4335 41 1 9.7403 -0.4527 3.9422 42 1 3.9026 -0.1502 3.9819 43 1 3.0862 0.9985 1.9654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239605861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:08 Heat of formation + Delta-G solvation = -40.519802 kcal Electronic energy + Delta-G solvation = -25787.335161 eV Core-core repulsion = 22097.935455 eV Total energy + Delta-G solvation = -3689.399706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.37600 -39.90415 -39.02652 -36.80346 -35.89963 -32.55033 -31.35841 -30.82240 -29.58480 -27.77716 -27.36180 -27.29599 -25.44954 -23.23612 -22.28688 -21.37879 -21.03003 -19.07468 -18.18981 -17.82249 -16.70366 -15.69889 -15.37200 -15.29032 -15.11979 -14.76257 -14.30482 -14.28224 -14.10642 -13.88443 -13.59402 -13.51909 -13.29731 -13.06673 -12.83014 -12.62157 -12.38336 -12.17090 -11.98766 -11.86251 -11.72856 -11.38254 -11.22475 -11.16551 -10.98422 -10.79695 -10.78815 -10.48447 -10.32954 -10.29572 -9.63712 -9.01267 -8.64165 -8.53625 -8.00606 -7.37288 -6.55759 -4.22699 1.33267 1.80425 1.99063 2.05819 3.13992 3.17852 3.35556 4.00668 4.13235 4.28541 4.56033 4.63539 4.76163 4.88286 4.95674 4.98272 5.14902 5.29110 5.33059 5.34907 5.47311 5.51701 5.54745 5.62029 5.70570 5.76407 5.79988 5.81093 5.91637 5.98308 5.99821 6.02504 6.19471 6.25273 6.26873 6.29976 6.41963 6.53167 6.75012 6.77595 6.86197 6.87899 6.94460 7.13127 7.37760 7.41534 7.63179 7.86026 8.77983 9.35959 10.50744 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.005293 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.083006 B = 5288.394388 C = 7481.806007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.015 4.015 9 C -0.140 4.140 10 C -0.035 4.035 11 C -0.241 4.241 12 C 0.144 3.856 13 F -0.149 7.149 14 C -0.259 4.259 15 C 0.194 3.806 16 O -0.192 6.192 17 C -0.394 4.394 18 H 0.109 0.891 19 C 0.071 3.929 20 N -0.869 5.869 21 Si 0.895 3.105 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.251 1.251 25 C -0.091 4.091 26 C -0.122 4.122 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.282 0.718 42 H 0.123 0.877 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 0.921 -6.936 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.083 4.083 6 C -0.137 4.137 7 C -0.131 4.131 8 C -0.015 4.015 9 C -0.142 4.142 10 C -0.054 4.054 11 C -0.261 4.261 12 C 0.124 3.876 13 F -0.127 7.127 14 C -0.279 4.279 15 C 0.139 3.861 16 O -0.095 6.095 17 C -0.469 4.469 18 H 0.126 0.874 19 C -0.135 4.135 20 N -0.505 5.505 21 Si 0.720 3.280 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.174 1.174 25 C -0.109 4.109 26 C -0.140 4.140 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.092 0.908 42 H 0.141 0.859 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.307 1.125 -7.164 16.938 hybrid contribution 0.365 0.178 -0.197 0.452 sum -14.942 1.303 -7.361 16.707 Atomic orbital electron populations 1.21870 0.93992 1.01874 1.01544 1.19457 0.95401 0.94957 0.92976 1.21970 1.01453 0.95130 1.01646 1.21891 1.01492 1.00105 0.96060 1.19701 0.98638 0.94196 0.95777 1.20736 1.01132 0.94214 0.97605 1.21140 0.98455 0.99379 0.94146 1.18550 0.96346 0.93007 0.93580 1.17922 0.90377 1.07045 0.98808 1.20535 0.98257 0.93948 0.92631 1.20523 0.93713 1.09769 1.02049 1.17535 0.92522 0.93866 0.83642 1.91434 1.90208 1.79841 1.51240 1.21116 1.01576 1.06430 0.98808 1.18699 0.88625 0.90379 0.88358 1.83617 1.20269 1.62880 1.42773 1.20822 0.81843 1.31404 1.12877 0.87405 1.24452 0.94096 0.96122 0.98788 1.69638 1.02866 1.38316 1.39717 0.86316 0.79138 0.80559 0.82033 1.19522 1.20684 1.17448 1.21281 0.98166 0.94116 0.97334 1.21061 0.98472 1.00102 0.94369 0.92546 0.92716 0.92515 0.92190 0.92661 0.92225 0.92470 0.92678 0.92413 0.86672 0.86295 0.85620 0.85951 0.83564 0.90770 0.85858 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.29 37.16 0.31 -0.98 16 2 C -0.03 -0.31 0.85 -155.66 -0.13 -0.45 16 3 C -0.14 -1.54 7.13 37.16 0.26 -1.27 16 4 C -0.14 -1.47 8.29 37.16 0.31 -1.16 16 5 C -0.08 -1.17 4.77 -104.55 -0.50 -1.67 16 6 C -0.12 -1.65 8.69 -39.63 -0.34 -2.00 16 7 C -0.11 -1.75 9.51 -39.23 -0.37 -2.12 16 8 C -0.01 -0.27 5.27 -104.91 -0.55 -0.82 16 9 C -0.14 -2.68 5.49 -104.72 -0.57 -3.26 16 10 C -0.04 -0.58 9.50 -39.28 -0.37 -0.95 16 11 C -0.24 -4.02 10.01 -39.52 -0.40 -4.41 16 12 C 0.14 2.76 7.29 -39.38 -0.29 2.47 16 13 F -0.15 -2.79 17.26 2.25 0.04 -2.75 16 14 C -0.26 -5.59 9.14 -39.37 -0.36 -5.95 16 15 C 0.19 4.31 6.56 -38.75 -0.25 4.06 16 16 O -0.19 -4.80 6.96 0.36 0.00 -4.80 16 17 C -0.39 -10.69 9.95 30.89 0.31 -10.38 16 18 H 0.11 3.01 5.44 -52.49 -0.29 2.73 16 19 C 0.07 1.91 5.49 -17.52 -0.10 1.82 16 20 N -0.87 -24.43 13.96 55.48 0.77 -23.65 16 21 Si 0.89 20.97 28.62 -169.99 -4.86 16.10 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.25 -5.96 7.11 56.52 0.40 -5.56 16 25 C -0.09 -1.67 8.79 -39.24 -0.34 -2.01 16 26 C -0.12 -1.95 8.96 -39.63 -0.36 -2.31 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.52 7.38 -51.93 -0.38 0.13 16 30 H 0.06 0.69 7.51 -51.92 -0.39 0.30 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 33 H 0.06 0.58 7.38 -51.93 -0.38 0.19 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.12 1.32 7.08 -52.49 -0.37 0.95 16 37 H 0.12 1.62 8.04 -52.49 -0.42 1.20 16 38 H 0.13 1.66 8.04 -52.48 -0.42 1.24 16 39 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.15 3.33 5.64 -52.49 -0.30 3.04 16 41 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 2.40 7.71 -52.49 -0.40 2.00 16 43 H 0.12 1.75 5.87 -52.48 -0.31 1.44 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -28.01 356.76 -8.15 -36.16 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.73 Total: 4.96 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -3.75 Total: -31.40 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.77 Total: -23.65 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.00 Total: -4.80 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.86 Total: 16.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.01 -8.15 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239605861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.360 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds