Wall clock time and date at job start Tue Mar 31 2020 11:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46730 * 2 1 4 4 C 1.53003 * 109.47119 * 240.00354 * 2 1 3 5 5 C 1.50700 * 109.47602 * 120.00220 * 2 1 3 6 6 C 1.38335 * 119.86891 * 59.99829 * 5 2 1 7 7 C 1.38002 * 120.12627 * 179.97438 * 6 5 2 8 8 C 1.39407 * 119.86820 * 0.02562 * 7 6 5 9 9 C 1.48268 * 120.12418 * 179.97438 * 8 7 6 10 10 C 1.39304 * 120.13845 * 310.00562 * 9 8 7 11 11 C 1.37968 * 119.97367 * 179.97438 * 10 9 8 12 12 C 1.38683 * 120.24179 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.86045 * 179.97438 * 12 11 10 14 14 C 1.38336 * 120.27585 * 359.95658 * 12 11 10 15 15 C 1.38713 * 120.02192 * 0.02562 * 14 12 11 16 16 O 1.35662 * 120.12094 * 179.97438 * 15 14 12 17 17 C 1.34817 * 116.99639 * 354.40853 * 16 15 14 18 18 H 1.07995 * 120.00323 * 5.05998 * 17 16 15 19 19 C 1.38651 * 119.99878 * 185.06521 * 17 16 15 20 20 N 1.31554 * 120.00258 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99814 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47011 * 89.99941 * 21 19 17 23 23 H 1.48496 * 109.47076 * 210.00271 * 21 19 17 24 24 H 1.48501 * 109.46958 * 330.00305 * 21 19 17 25 25 C 1.39394 * 119.74749 * 0.27708 * 8 7 6 26 26 C 1.38006 * 119.86988 * 359.44129 * 25 8 7 27 27 H 1.09002 * 109.47191 * 299.99340 * 1 2 3 28 28 H 1.08996 * 109.47320 * 59.99937 * 1 2 3 29 29 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47055 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47270 * 300.00094 * 3 2 1 32 32 H 1.08998 * 109.47215 * 60.00429 * 3 2 1 33 33 H 1.08997 * 109.47052 * 299.99842 * 4 2 1 34 34 H 1.09005 * 109.46684 * 59.99587 * 4 2 1 35 35 H 1.09001 * 109.47269 * 179.97438 * 4 2 1 36 36 H 1.08000 * 119.94148 * 359.96274 * 6 5 2 37 37 H 1.07991 * 120.06404 * 180.02562 * 7 6 5 38 38 H 1.08009 * 120.01514 * 359.95189 * 10 9 8 39 39 H 1.07994 * 119.87834 * 179.97438 * 11 10 9 40 40 H 1.08001 * 119.98938 * 179.74863 * 14 12 11 41 41 H 0.97001 * 119.99913 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.06395 * 179.70015 * 25 8 7 43 43 H 1.08005 * 119.93543 * 180.30110 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6966 -2.0349 1.4466 7 6 2.1543 -2.6908 2.5713 8 6 2.9560 -2.0158 3.4906 9 6 3.4503 -2.7148 4.7011 10 6 2.5650 -3.4236 5.5101 11 6 3.0287 -4.0732 6.6354 12 6 4.3747 -4.0233 6.9659 13 9 4.8204 -4.6618 8.0699 14 6 5.2628 -3.3227 6.1696 15 6 4.8088 -2.6658 5.0354 16 8 5.6779 -1.9778 4.2533 17 6 6.9477 -1.8738 4.6944 18 1 7.2529 -2.3954 5.5894 19 6 7.8616 -1.0970 3.9989 20 7 9.1008 -0.9959 4.4290 21 14 7.3338 -0.1951 2.4505 22 1 6.8347 1.1563 2.8106 23 1 8.4942 -0.0660 1.5330 24 1 6.2528 -0.9588 1.7770 25 6 3.2858 -0.6794 3.2706 26 6 2.8272 -0.0355 2.1394 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.0750 -2.5566 0.7340 37 1 1.8918 -3.7248 2.7388 38 1 1.5158 -3.4642 5.2566 39 1 2.3409 -4.6218 7.2617 40 1 6.3094 -3.2835 6.4335 41 1 9.7403 -0.4527 3.9422 42 1 3.9026 -0.1502 3.9819 43 1 3.0862 0.9985 1.9654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239605861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:07 Heat of formation + Delta-G solvation = -52.421186 kcal Electronic energy + Delta-G solvation = -25787.851244 eV Core-core repulsion = 22097.935455 eV Total energy + Delta-G solvation = -3689.915789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.91746 -41.32083 -40.37774 -38.34009 -37.04878 -34.55073 -32.71888 -32.01608 -31.15545 -29.15357 -28.22006 -28.04014 -27.34566 -24.55736 -23.73242 -22.75704 -22.41673 -20.18909 -19.95183 -19.49969 -17.97297 -17.36943 -16.98841 -16.69345 -16.44118 -16.01165 -15.91429 -15.56175 -15.54395 -15.12500 -15.01661 -14.99720 -14.50446 -14.29953 -14.22097 -14.04973 -13.73258 -13.53205 -13.10405 -12.87593 -12.85719 -12.55151 -12.52405 -12.49200 -12.35379 -12.18812 -12.14149 -11.78520 -11.65245 -11.41590 -11.31905 -10.98987 -10.03579 -9.75980 -9.53389 -8.86340 -8.58806 -6.31051 -0.08507 0.43715 0.58125 0.69706 1.24752 1.27605 1.46673 2.20252 2.53525 2.81020 2.94634 3.00701 3.32299 3.67043 3.82153 3.86145 3.94799 4.14356 4.15321 4.19014 4.24743 4.37710 4.43152 4.57712 4.67939 4.72482 4.82724 4.85694 4.93261 4.96424 5.03077 5.05944 5.06942 5.17322 5.18210 5.21718 5.23897 5.29817 5.38320 5.40186 5.50035 5.58015 5.62990 5.76375 5.78772 5.83276 6.05284 6.17660 6.75067 7.45086 8.52470 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.005293 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.083006 B = 5288.394388 C = 7481.806007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.044 4.044 9 C -0.131 4.131 10 C -0.024 4.024 11 C -0.208 4.208 12 C 0.130 3.870 13 F -0.147 7.147 14 C -0.279 4.279 15 C 0.163 3.837 16 O -0.215 6.215 17 C -0.402 4.402 18 H 0.080 0.920 19 C 0.022 3.978 20 N -0.916 5.916 21 Si 0.956 3.044 22 H -0.262 1.262 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.114 4.114 26 C -0.135 4.135 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.118 0.882 41 H 0.286 0.714 42 H 0.095 0.905 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 0.183 -8.922 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 C -0.204 4.204 4 C -0.195 4.195 5 C -0.076 4.076 6 C -0.132 4.132 7 C -0.127 4.127 8 C -0.044 4.044 9 C -0.132 4.132 10 C -0.042 4.042 11 C -0.227 4.227 12 C 0.111 3.889 13 F -0.126 7.126 14 C -0.299 4.299 15 C 0.112 3.888 16 O -0.121 6.121 17 C -0.478 4.478 18 H 0.098 0.902 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.778 3.222 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.183 1.183 25 C -0.132 4.132 26 C -0.153 4.153 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.191 0.809 39 H 0.183 0.817 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.966 0.366 -9.124 21.955 hybrid contribution 1.503 0.273 0.534 1.618 sum -18.463 0.639 -8.590 20.374 Atomic orbital electron populations 1.21845 0.92102 1.02680 1.02267 1.19562 0.96800 0.94815 0.91746 1.21991 1.00576 0.95230 1.02612 1.21901 1.00362 1.00810 0.96444 1.20117 0.96937 0.94552 0.96006 1.21123 1.00606 0.94051 0.97452 1.21398 0.97218 1.00321 0.93723 1.18627 0.98328 0.93089 0.94371 1.18344 0.89127 1.06257 0.99511 1.21074 0.99888 0.91955 0.91270 1.21049 0.92609 1.07434 1.01567 1.17684 0.93431 0.94139 0.83625 1.91436 1.90425 1.79718 1.51025 1.21084 1.01004 1.07949 0.99882 1.19237 0.89901 0.90796 0.88882 1.83592 1.19380 1.65300 1.43821 1.20703 0.83369 1.31430 1.12319 0.90208 1.25157 0.94075 0.96987 1.01602 1.69717 1.03918 1.40337 1.41558 0.85418 0.78622 0.79479 0.78684 1.18637 1.19379 1.18291 1.21215 0.99029 0.94872 0.98117 1.21227 0.99094 1.00730 0.94216 0.92989 0.90926 0.91663 0.93655 0.90668 0.92348 0.91670 0.90643 0.94235 0.83318 0.83897 0.80933 0.81655 0.86425 0.90399 0.88687 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.29 71.98 0.60 -1.36 16 2 C -0.03 -0.56 0.85 -52.93 -0.05 -0.61 16 3 C -0.15 -2.79 7.13 71.98 0.51 -2.27 16 4 C -0.14 -2.45 8.29 71.98 0.60 -1.85 16 5 C -0.08 -1.96 4.77 -19.82 -0.09 -2.05 16 6 C -0.11 -2.76 8.69 22.24 0.19 -2.56 16 7 C -0.11 -3.01 9.51 22.50 0.21 -2.79 16 8 C -0.04 -1.55 5.27 -20.05 -0.11 -1.65 16 9 C -0.13 -4.90 5.49 -19.93 -0.11 -5.01 16 10 C -0.02 -0.70 9.50 22.46 0.21 -0.48 16 11 C -0.21 -6.13 10.01 22.31 0.22 -5.91 16 12 C 0.13 4.92 7.29 22.40 0.16 5.09 16 13 F -0.15 -5.46 17.26 44.97 0.78 -4.68 16 14 C -0.28 -12.69 9.14 22.41 0.20 -12.49 16 15 C 0.16 7.56 6.56 22.81 0.15 7.71 16 16 O -0.22 -11.44 6.96 -21.64 -0.15 -11.59 16 17 C -0.40 -23.55 9.95 67.92 0.68 -22.87 16 18 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 19 C 0.02 1.25 5.49 84.83 0.47 1.71 16 20 N -0.92 -54.65 13.96 21.61 0.30 -54.35 16 21 Si 0.96 45.47 28.62 68.60 1.96 47.43 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 25 C -0.11 -4.25 8.79 22.49 0.20 -4.05 16 26 C -0.13 -4.24 8.96 22.24 0.20 -4.04 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.86 7.38 -2.38 -0.02 0.85 16 30 H 0.04 0.98 7.51 -2.38 -0.02 0.96 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.10 7.51 -2.39 -0.02 1.09 16 33 H 0.06 1.04 7.38 -2.39 -0.02 1.03 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.15 2.59 7.08 -2.91 -0.02 2.57 16 37 H 0.14 3.20 8.04 -2.92 -0.02 3.18 16 38 H 0.17 3.47 8.04 -2.91 -0.02 3.45 16 39 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 40 H 0.12 5.96 5.64 -2.91 -0.02 5.94 16 41 H 0.29 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.09 3.97 7.71 -2.91 -0.02 3.95 16 43 H 0.13 3.69 5.87 -2.91 -0.02 3.68 16 Total: -1.00 -66.44 356.76 8.16 -58.28 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 1.02 Total: 20.40 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 4.25 Total: -55.49 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.30 Total: -54.35 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.15 Total: -11.59 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.78 Total: -4.68 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.96 Total: 47.43 kcal Total: -66.44 8.16 -58.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239605861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.854 kcal (2) G-P(sol) polarization free energy of solvation -66.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds