Wall clock time and date at job start Tue Mar 31 2020 10:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35851 * 116.99643 * 2 1 4 4 C 1.38580 * 120.12097 * 0.23694 * 3 2 1 5 5 C 1.38192 * 120.06128 * 180.27024 * 4 3 2 6 6 C 1.38388 * 120.30685 * 359.76923 * 5 4 3 7 7 C 1.50693 * 119.88163 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47670 * 299.98014 * 7 6 5 9 9 C 1.53002 * 109.46844 * 59.97937 * 7 6 5 10 10 C 1.38011 * 120.23581 * 359.97378 * 6 5 4 11 11 C 1.39307 * 119.93287 * 0.02562 * 10 6 5 12 12 C 1.48322 * 120.14949 * 180.02562 * 11 10 6 13 13 C 1.38688 * 120.01679 * 64.99800 * 12 11 10 14 14 C 1.40548 * 119.65492 * 180.02562 * 13 12 11 15 15 C 1.41339 * 120.15340 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99668 * 204.52339 * 15 14 13 17 17 C 1.39891 * 120.00320 * 24.52184 * 15 14 13 18 18 N 1.30862 * 119.99907 * 17.94878 * 17 15 14 19 19 Si 1.86795 * 120.00222 * 197.94647 * 17 15 14 20 20 H 1.48498 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47418 * 120.00129 * 19 17 15 22 22 H 1.48507 * 109.47291 * 240.00456 * 19 17 15 23 23 C 1.40851 * 119.68843 * 359.97438 * 14 13 12 24 24 C 1.37567 * 120.02570 * 359.97438 * 23 14 13 25 25 C 1.38740 * 120.35070 * 0.30111 * 24 23 14 26 26 F 1.35108 * 119.84059 * 179.72494 * 25 24 23 27 27 H 1.09000 * 109.47583 * 299.99957 * 1 2 3 28 28 H 1.09003 * 109.47354 * 59.99534 * 1 2 3 29 29 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.96689 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.84548 * 179.74389 * 5 4 3 32 32 H 1.09000 * 109.47479 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46792 * 299.99956 * 8 7 6 34 34 H 1.09000 * 109.46937 * 59.99341 * 8 7 6 35 35 H 1.08995 * 109.47466 * 179.97438 * 8 7 6 36 36 H 1.09007 * 109.47184 * 59.99947 * 9 7 6 37 37 H 1.09009 * 109.47134 * 179.97438 * 9 7 6 38 38 H 1.08995 * 109.47337 * 299.99549 * 9 7 6 39 39 H 1.07996 * 120.03450 * 180.02562 * 10 6 5 40 40 H 1.08002 * 120.17314 * 0.04431 * 13 12 11 41 41 H 0.96997 * 120.00334 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.98746 * 179.97438 * 23 14 13 43 43 H 1.08007 * 119.82147 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 1.2933 2.3742 0.0050 5 6 1.9218 3.6049 -0.0007 6 6 3.3035 3.6834 -0.0065 7 6 3.9789 5.0305 -0.0132 8 6 3.5582 5.8059 -1.2632 9 6 3.5673 5.8135 1.2352 10 6 4.0649 2.5324 -0.0061 11 6 3.4416 1.2866 -0.0005 12 6 4.2553 0.0465 0.0005 13 6 5.0638 -0.2520 1.0871 14 6 5.8321 -1.4289 1.0798 15 6 6.6593 -1.7436 2.1818 16 1 7.5176 -2.3851 2.0468 17 6 6.3663 -1.2242 3.4472 18 7 5.1723 -0.7523 3.7004 19 14 7.6794 -1.2044 4.7756 20 1 8.9344 -1.7903 4.2399 21 1 7.9302 0.1954 5.2030 22 1 7.2178 -2.0023 5.9400 23 6 5.7730 -2.2936 -0.0305 24 6 4.9658 -1.9854 -1.1009 25 6 4.2112 -0.8212 -1.0975 26 9 3.4261 -0.5258 -2.1567 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2147 2.3193 0.0084 31 1 1.3320 4.5097 -0.0010 32 1 5.0604 4.8947 -0.0167 33 1 3.8514 5.2480 -2.1526 34 1 2.4767 5.9416 -1.2597 35 1 4.0464 6.7804 -1.2678 36 1 3.8671 5.2611 2.1258 37 1 4.0563 6.7878 1.2306 38 1 2.4859 5.9494 1.2387 39 1 5.1429 2.5975 -0.0103 40 1 5.1027 0.4163 1.9346 41 1 4.9690 -0.3925 4.5779 42 1 6.3617 -3.1991 -0.0414 43 1 4.9227 -2.6511 -1.9503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239661032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:19 Heat of formation + Delta-G solvation = -59.995257 kcal Electronic energy + Delta-G solvation = -26079.612775 eV Core-core repulsion = 22389.368550 eV Total energy + Delta-G solvation = -3690.244225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -47.34837 -39.86288 -37.72262 -37.26392 -34.63180 -33.57399 -31.74121 -29.40644 -29.19574 -28.21209 -27.07683 -26.66082 -25.02796 -23.13930 -22.16876 -20.97736 -20.74562 -19.19182 -17.78892 -17.09030 -16.15438 -15.92633 -15.47132 -15.26639 -15.03826 -14.50379 -14.28687 -14.13979 -14.05881 -13.65441 -13.37168 -13.23233 -12.87994 -12.55785 -12.45494 -12.32153 -12.06746 -11.88286 -11.80378 -11.61100 -11.27156 -11.17725 -11.07723 -10.94499 -10.88404 -10.65564 -10.46991 -10.42933 -10.26330 -9.92115 -9.47169 -9.16039 -8.49127 -7.76608 -7.38064 -7.19675 -6.80590 -4.37982 1.69571 1.84474 2.64884 2.83033 3.05720 3.09754 3.12634 3.74092 3.89942 4.14086 4.49328 4.87241 4.92882 5.17367 5.22197 5.30395 5.37382 5.39512 5.51463 5.59594 5.64923 5.68340 5.69970 5.77264 5.85700 5.86981 5.95316 6.01737 6.10564 6.15940 6.25412 6.31731 6.40693 6.67324 6.74845 6.77787 6.94101 6.99151 7.09948 7.15612 7.25609 7.41672 7.69285 7.83077 7.89140 7.97498 8.17374 8.51539 8.80682 8.85104 10.13435 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.005136 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.514023 B = 5450.492725 C = 6727.553859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.296 6.296 3 C 0.139 3.861 4 C -0.212 4.212 5 C -0.086 4.086 6 C -0.119 4.119 7 C -0.050 4.050 8 C -0.142 4.142 9 C -0.143 4.143 10 C -0.068 4.068 11 C -0.042 4.042 12 C -0.060 4.060 13 C -0.121 4.121 14 C 0.100 3.900 15 C -0.458 4.458 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.789 5.789 19 Si 0.907 3.093 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.201 4.201 24 C -0.123 4.123 25 C -0.016 4.016 26 F -0.168 7.168 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.281 0.719 42 H 0.101 0.899 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 9.507 -3.516 11.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.209 6.209 3 C 0.094 3.906 4 C -0.231 4.231 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.069 4.069 8 C -0.199 4.199 9 C -0.200 4.200 10 C -0.086 4.086 11 C -0.043 4.043 12 C -0.061 4.061 13 C -0.141 4.141 14 C 0.097 3.903 15 C -0.488 4.488 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.414 5.414 19 Si 0.731 3.269 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.221 4.221 24 C -0.142 4.142 25 C -0.036 4.036 26 F -0.147 7.147 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.009 9.413 -3.353 11.660 hybrid contribution -0.045 0.054 0.560 0.564 sum -6.053 9.466 -2.793 11.578 Atomic orbital electron populations 1.22977 0.79678 1.03472 1.00518 1.86245 1.20062 1.26497 1.88060 1.19055 0.91632 0.84117 0.95822 1.21031 0.99388 0.92317 1.10380 1.20572 0.93855 0.96331 0.99695 1.19549 0.93409 0.94338 1.04640 1.20007 0.99760 0.91813 0.95303 1.21850 1.01236 0.99350 0.97491 1.21855 1.01232 0.99321 0.97575 1.20968 0.99630 0.90053 0.97921 1.18204 0.89486 0.93765 1.02797 1.18270 0.99594 0.93256 0.94937 1.21298 0.98609 0.97917 0.96250 1.17560 0.90927 0.89852 0.91913 1.19560 1.10539 1.26703 0.91972 0.90117 1.25916 0.95464 0.92921 0.99975 1.69843 1.19072 1.29333 1.23165 0.86282 0.81691 0.78906 0.80025 1.18315 1.19653 1.19969 1.20862 1.04562 1.00425 0.96251 1.20433 0.99043 0.95598 0.99089 1.17212 1.01060 0.98906 0.86441 1.91281 1.73967 1.93857 1.55635 0.93160 0.93258 0.88671 0.86018 0.86601 0.90588 0.92542 0.92752 0.92821 0.92409 0.92831 0.92752 0.85540 0.85409 0.90776 0.88059 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.30 -5.99 9.68 -19.27 -0.19 -6.18 16 3 C 0.14 2.78 6.48 -38.87 -0.25 2.53 16 4 C -0.21 -3.46 9.03 -39.47 -0.36 -3.82 16 5 C -0.09 -1.29 8.70 -39.54 -0.34 -1.63 16 6 C -0.12 -1.87 4.78 -104.65 -0.50 -2.37 16 7 C -0.05 -0.63 3.09 -91.78 -0.28 -0.92 16 8 C -0.14 -1.53 9.01 37.15 0.33 -1.20 16 9 C -0.14 -1.59 9.00 37.16 0.33 -1.26 16 10 C -0.07 -1.27 9.35 -39.27 -0.37 -1.64 16 11 C -0.04 -0.90 5.00 -104.76 -0.52 -1.43 16 12 C -0.06 -1.45 4.94 -104.92 -0.52 -1.97 16 13 C -0.12 -3.14 8.36 -38.54 -0.32 -3.46 16 14 C 0.10 2.62 5.57 -106.86 -0.60 2.02 16 15 C -0.46 -11.82 9.04 -37.78 -0.34 -12.16 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 17 C 0.08 1.85 5.13 -17.35 -0.09 1.76 16 18 N -0.79 -20.14 10.96 55.54 0.61 -19.53 16 19 Si 0.91 18.24 29.60 -169.99 -5.03 13.21 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.20 -4.89 9.78 -38.84 -0.38 -5.27 16 24 C -0.12 -2.87 9.99 -39.64 -0.40 -3.27 16 25 C -0.02 -0.40 6.98 -38.73 -0.27 -0.67 16 26 F -0.17 -4.01 16.63 2.25 0.04 -3.97 16 27 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 28 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.12 1.64 6.30 -52.49 -0.33 1.30 16 31 H 0.12 1.40 7.07 -52.49 -0.37 1.03 16 32 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.05 0.57 7.37 -51.93 -0.38 0.19 16 39 H 0.13 2.29 7.94 -52.49 -0.42 1.87 16 40 H 0.13 3.41 6.16 -52.49 -0.32 3.09 16 41 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 42 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -28.93 360.68 -8.94 -37.86 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.92 Total: 6.51 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: -3.88 Total: -33.34 kcal Atomic # 7 Polarization: -20.14 SS G_CDS: 0.61 Total: -19.53 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.19 Total: -6.18 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.93 -8.94 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239661032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.131 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds