Wall clock time and date at job start Tue Mar 31 2020 10:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35851 * 116.99643 * 2 1 4 4 C 1.38580 * 120.12097 * 0.23694 * 3 2 1 5 5 C 1.38192 * 120.06128 * 180.27024 * 4 3 2 6 6 C 1.38388 * 120.30685 * 359.76923 * 5 4 3 7 7 C 1.50693 * 119.88163 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47670 * 299.98014 * 7 6 5 9 9 C 1.53002 * 109.46844 * 59.97937 * 7 6 5 10 10 C 1.38011 * 120.23581 * 359.97378 * 6 5 4 11 11 C 1.39307 * 119.93287 * 0.02562 * 10 6 5 12 12 C 1.48322 * 120.14949 * 180.02562 * 11 10 6 13 13 C 1.38688 * 120.01679 * 64.99800 * 12 11 10 14 14 C 1.40548 * 119.65492 * 180.02562 * 13 12 11 15 15 C 1.41339 * 120.15340 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99668 * 204.52339 * 15 14 13 17 17 C 1.39891 * 120.00320 * 24.52184 * 15 14 13 18 18 N 1.30862 * 119.99907 * 17.94878 * 17 15 14 19 19 Si 1.86795 * 120.00222 * 197.94647 * 17 15 14 20 20 H 1.48498 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47418 * 120.00129 * 19 17 15 22 22 H 1.48507 * 109.47291 * 240.00456 * 19 17 15 23 23 C 1.40851 * 119.68843 * 359.97438 * 14 13 12 24 24 C 1.37567 * 120.02570 * 359.97438 * 23 14 13 25 25 C 1.38740 * 120.35070 * 0.30111 * 24 23 14 26 26 F 1.35108 * 119.84059 * 179.72494 * 25 24 23 27 27 H 1.09000 * 109.47583 * 299.99957 * 1 2 3 28 28 H 1.09003 * 109.47354 * 59.99534 * 1 2 3 29 29 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.96689 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.84548 * 179.74389 * 5 4 3 32 32 H 1.09000 * 109.47479 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46792 * 299.99956 * 8 7 6 34 34 H 1.09000 * 109.46937 * 59.99341 * 8 7 6 35 35 H 1.08995 * 109.47466 * 179.97438 * 8 7 6 36 36 H 1.09007 * 109.47184 * 59.99947 * 9 7 6 37 37 H 1.09009 * 109.47134 * 179.97438 * 9 7 6 38 38 H 1.08995 * 109.47337 * 299.99549 * 9 7 6 39 39 H 1.07996 * 120.03450 * 180.02562 * 10 6 5 40 40 H 1.08002 * 120.17314 * 0.04431 * 13 12 11 41 41 H 0.96997 * 120.00334 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.98746 * 179.97438 * 23 14 13 43 43 H 1.08007 * 119.82147 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 1.2933 2.3742 0.0050 5 6 1.9218 3.6049 -0.0007 6 6 3.3035 3.6834 -0.0065 7 6 3.9789 5.0305 -0.0132 8 6 3.5582 5.8059 -1.2632 9 6 3.5673 5.8135 1.2352 10 6 4.0649 2.5324 -0.0061 11 6 3.4416 1.2866 -0.0005 12 6 4.2553 0.0465 0.0005 13 6 5.0638 -0.2520 1.0871 14 6 5.8321 -1.4289 1.0798 15 6 6.6593 -1.7436 2.1818 16 1 7.5176 -2.3851 2.0468 17 6 6.3663 -1.2242 3.4472 18 7 5.1723 -0.7523 3.7004 19 14 7.6794 -1.2044 4.7756 20 1 8.9344 -1.7903 4.2399 21 1 7.9302 0.1954 5.2030 22 1 7.2178 -2.0023 5.9400 23 6 5.7730 -2.2936 -0.0305 24 6 4.9658 -1.9854 -1.1009 25 6 4.2112 -0.8212 -1.0975 26 9 3.4261 -0.5258 -2.1567 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2147 2.3193 0.0084 31 1 1.3320 4.5097 -0.0010 32 1 5.0604 4.8947 -0.0167 33 1 3.8514 5.2480 -2.1526 34 1 2.4767 5.9416 -1.2597 35 1 4.0464 6.7804 -1.2678 36 1 3.8671 5.2611 2.1258 37 1 4.0563 6.7878 1.2306 38 1 2.4859 5.9494 1.2387 39 1 5.1429 2.5975 -0.0103 40 1 5.1027 0.4163 1.9346 41 1 4.9690 -0.3925 4.5779 42 1 6.3617 -3.1991 -0.0414 43 1 4.9227 -2.6511 -1.9503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239661032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:18 Heat of formation + Delta-G solvation = -72.542853 kcal Electronic energy + Delta-G solvation = -26080.156880 eV Core-core repulsion = 22389.368550 eV Total energy + Delta-G solvation = -3690.788330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.25033 -41.22250 -39.18224 -38.90640 -35.91685 -35.34968 -33.27506 -31.28177 -30.60474 -29.70102 -27.92047 -27.87443 -26.95367 -24.56003 -23.54574 -22.77431 -22.28404 -20.58222 -19.32231 -18.73076 -17.94622 -17.36148 -17.20627 -16.65189 -16.37342 -16.21606 -15.93360 -15.69758 -15.31909 -15.07025 -14.65736 -14.44193 -14.35095 -14.12843 -13.82205 -13.72996 -13.61640 -13.30075 -13.09779 -12.93945 -12.83071 -12.77269 -12.54697 -12.23189 -12.14766 -12.08448 -11.81395 -11.73252 -11.60869 -11.52951 -11.20638 -11.01433 -9.95928 -9.41785 -9.24537 -8.80351 -8.66685 -6.35889 0.26091 0.49623 0.82805 0.95236 1.39062 1.46849 1.54927 2.19902 2.48488 2.60304 2.80162 3.56652 3.70630 3.84202 3.93263 3.97544 4.13185 4.22764 4.31144 4.36168 4.37245 4.38317 4.47937 4.60256 4.66705 4.71646 4.84236 4.86811 4.95581 5.00627 5.03631 5.08737 5.15433 5.17705 5.26679 5.29678 5.40046 5.45682 5.47132 5.54601 5.74840 5.77313 5.88797 5.94394 6.02321 6.25296 6.54047 6.61856 6.86589 6.91544 8.29359 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.005136 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.514023 B = 5450.492725 C = 6727.553859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.118 3.882 4 C -0.206 4.206 5 C -0.076 4.076 6 C -0.113 4.113 7 C -0.052 4.052 8 C -0.138 4.138 9 C -0.139 4.139 10 C -0.084 4.084 11 C -0.088 4.088 12 C -0.053 4.053 13 C -0.146 4.146 14 C 0.075 3.925 15 C -0.488 4.488 16 H 0.084 0.916 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.983 3.017 20 H -0.254 1.254 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.214 4.214 24 C -0.120 4.120 25 C -0.036 4.036 26 F -0.167 7.167 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.289 0.711 42 H 0.117 0.883 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 11.535 -3.268 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.073 3.927 4 C -0.224 4.224 5 C -0.093 4.093 6 C -0.113 4.113 7 C -0.070 4.070 8 C -0.195 4.195 9 C -0.196 4.196 10 C -0.102 4.102 11 C -0.089 4.089 12 C -0.054 4.054 13 C -0.165 4.165 14 C 0.073 3.927 15 C -0.517 4.517 16 H 0.103 0.897 17 C -0.180 4.180 18 N -0.446 5.446 19 Si 0.803 3.197 20 H -0.177 1.177 21 H -0.190 1.190 22 H -0.191 1.191 23 C -0.233 4.233 24 C -0.139 4.139 25 C -0.055 4.055 26 F -0.146 7.146 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.084 11.438 -3.125 13.812 hybrid contribution 0.178 -0.527 0.427 0.701 sum -6.906 10.911 -2.698 13.191 Atomic orbital electron populations 1.23296 0.76938 1.05014 1.02203 1.86170 1.23133 1.27348 1.88389 1.19244 0.91290 0.85323 0.96856 1.21410 1.00893 0.91415 1.08718 1.21049 0.93677 0.97365 0.97247 1.19917 0.94025 0.94696 1.02690 1.20090 0.99216 0.90494 0.97224 1.21823 1.02217 0.99767 0.95684 1.21835 1.02252 0.99755 0.95794 1.21031 0.99588 0.90584 0.99032 1.18356 0.90656 0.93448 1.06445 1.18546 0.98586 0.94294 0.94004 1.21177 1.00556 0.98161 0.96617 1.17951 0.91423 0.90405 0.92956 1.19850 1.11013 1.27982 0.92874 0.89749 1.26806 0.97426 0.91801 1.01940 1.69914 1.20945 1.29610 1.24167 0.85148 0.78583 0.79168 0.76801 1.17737 1.18962 1.19057 1.21061 1.05237 1.00903 0.96148 1.20722 0.98006 0.95594 0.99603 1.17449 1.01691 0.99616 0.86782 1.91264 1.73991 1.93922 1.55423 0.91539 0.91277 0.87437 0.82741 0.82563 0.91315 0.93665 0.91501 0.90789 0.94077 0.90745 0.91462 0.86554 0.87178 0.90060 0.86479 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.64 16 2 O -0.34 -13.81 9.68 -91.88 -0.89 -14.70 16 3 C 0.12 4.76 6.48 22.73 0.15 4.91 16 4 C -0.21 -6.29 9.03 22.34 0.20 -6.09 16 5 C -0.08 -2.05 8.70 22.29 0.19 -1.85 16 6 C -0.11 -3.43 4.78 -19.88 -0.10 -3.52 16 7 C -0.05 -1.20 3.09 -11.54 -0.04 -1.24 16 8 C -0.14 -2.55 9.01 71.98 0.65 -1.91 16 9 C -0.14 -2.72 9.00 71.98 0.65 -2.07 16 10 C -0.08 -3.28 9.35 22.47 0.21 -3.07 16 11 C -0.09 -3.98 5.00 -19.96 -0.10 -4.08 16 12 C -0.05 -2.74 4.94 -20.05 -0.10 -2.84 16 13 C -0.15 -8.00 8.36 22.94 0.19 -7.81 16 14 C 0.08 4.13 5.57 -21.31 -0.12 4.01 16 15 C -0.49 -26.09 9.04 23.43 0.21 -25.88 16 16 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 17 C 0.04 1.80 5.13 85.24 0.44 2.23 16 18 N -0.82 -43.38 10.96 21.82 0.24 -43.14 16 19 Si 0.98 37.74 29.60 68.60 2.03 39.77 16 20 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 22 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 23 C -0.21 -10.74 9.78 22.75 0.22 -10.52 16 24 C -0.12 -5.77 9.99 22.23 0.22 -5.55 16 25 C -0.04 -1.80 6.98 22.82 0.16 -1.64 16 26 F -0.17 -8.14 16.63 44.97 0.75 -7.39 16 27 H 0.07 1.53 7.65 -2.39 -0.02 1.51 16 28 H 0.07 1.55 7.67 -2.39 -0.02 1.53 16 29 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.16 3.59 6.30 -2.91 -0.02 3.57 16 31 H 0.16 2.98 7.07 -2.91 -0.02 2.95 16 32 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.08 7.38 -2.39 -0.02 1.06 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.14 7.37 -2.39 -0.02 1.12 16 39 H 0.12 4.55 7.94 -2.91 -0.02 4.53 16 40 H 0.11 6.32 6.16 -2.91 -0.02 6.30 16 41 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 42 H 0.12 5.34 8.06 -2.91 -0.02 5.32 16 43 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -66.34 360.68 7.30 -59.04 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 1.01 Total: 31.71 kcal Atomic # 6 Polarization: -69.44 SS G_CDS: 4.16 Total: -65.28 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.24 Total: -43.14 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.89 Total: -14.70 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.75 Total: -7.39 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -66.34 7.30 -59.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239661032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.508 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds