Wall clock time and date at job start Tue Mar 31 2020 10:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35837 * 116.99901 * 2 1 4 4 C 1.38591 * 120.11905 * 359.73004 * 3 2 1 5 5 C 1.38186 * 120.05968 * 179.71840 * 4 3 2 6 6 C 1.38384 * 120.30300 * 0.55387 * 5 4 3 7 7 C 1.50700 * 119.88166 * 179.74660 * 6 5 4 8 8 C 1.52997 * 109.46914 * 299.97630 * 7 6 5 9 9 C 1.53001 * 109.47200 * 59.97397 * 7 6 5 10 10 C 1.38014 * 120.23926 * 359.72292 * 6 5 4 11 11 C 1.39296 * 119.93022 * 359.97438 * 10 6 5 12 12 C 1.48348 * 120.14851 * 179.97438 * 11 10 6 13 13 C 1.39729 * 119.98922 * 310.02765 * 12 11 10 14 14 C 1.38613 * 120.34971 * 179.97438 * 13 12 11 15 15 F 1.35100 * 119.83570 * 179.97438 * 14 13 12 16 16 C 1.37944 * 120.32580 * 0.02562 * 14 13 12 17 17 C 1.40719 * 119.97710 * 0.02562 * 16 14 13 18 18 C 1.41421 * 120.17509 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00306 * 154.72842 * 18 17 16 20 20 C 1.39924 * 120.00111 * 334.73844 * 18 17 16 21 21 N 1.30835 * 119.99705 * 342.83414 * 20 18 17 22 22 Si 1.86798 * 120.00424 * 162.83635 * 20 18 17 23 23 H 1.48507 * 109.47132 * 59.99555 * 22 20 18 24 24 H 1.48497 * 109.47510 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47170 * 299.99882 * 22 20 18 26 26 C 1.38758 * 119.98928 * 129.75270 * 12 11 10 27 27 H 1.08997 * 109.46902 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47189 * 299.99661 * 1 2 3 29 29 H 1.09000 * 109.46875 * 60.00017 * 1 2 3 30 30 H 1.07993 * 119.96651 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.84789 * 180.27784 * 5 4 3 32 32 H 1.08998 * 109.47293 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.47508 * 299.99824 * 8 7 6 34 34 H 1.08998 * 109.47190 * 59.99877 * 8 7 6 35 35 H 1.09000 * 109.47187 * 180.02562 * 8 7 6 36 36 H 1.09008 * 109.46659 * 60.00600 * 9 7 6 37 37 H 1.09000 * 109.46743 * 180.02562 * 9 7 6 38 38 H 1.08998 * 109.47139 * 300.00267 * 9 7 6 39 39 H 1.07997 * 120.03348 * 180.02562 * 10 6 5 40 40 H 1.08007 * 119.82443 * 359.97438 * 13 12 11 41 41 H 1.08008 * 120.01106 * 179.97438 * 16 14 13 42 42 H 0.97006 * 119.99971 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.16529 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2932 2.3742 -0.0056 5 6 1.9218 3.6048 0.0002 6 6 3.3034 3.6832 0.0002 7 6 3.9790 5.0302 0.0009 8 6 3.5634 5.8098 -1.2482 9 6 3.5625 5.8091 1.2502 10 6 4.0649 2.5321 0.0001 11 6 3.4415 1.2864 0.0005 12 6 4.2553 0.0461 -0.0002 13 6 5.2885 -0.1109 -0.9277 14 6 6.0538 -1.2665 -0.9347 15 9 7.0499 -1.4076 -1.8364 16 6 5.8028 -2.2737 -0.0262 17 6 4.7650 -2.1306 0.9133 18 6 4.5036 -3.1607 1.8463 19 1 4.0287 -2.9286 2.7881 20 6 4.8604 -4.4807 1.5493 21 7 5.1176 -4.8266 0.3140 22 14 4.9694 -5.7490 2.9164 23 1 3.6474 -5.8756 3.5809 24 1 5.3628 -7.0615 2.3438 25 1 5.9842 -5.3184 3.9113 26 6 3.9939 -0.9555 0.9240 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2147 2.3193 -0.0105 31 1 1.3321 4.5096 0.0003 32 1 5.0605 4.8943 0.0013 33 1 3.8601 5.2550 -2.1384 34 1 2.4819 5.9457 -1.2486 35 1 4.0524 6.7840 -1.2480 36 1 3.8587 5.2536 2.1402 37 1 4.0509 6.7836 1.2504 38 1 2.4810 5.9450 1.2499 39 1 5.1429 2.5971 0.0005 40 1 5.4918 0.6724 -1.6430 41 1 6.4021 -3.1722 -0.0364 42 1 5.3646 -5.7418 0.1080 43 1 3.1990 -0.8345 1.6450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239663957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:23 Heat of formation + Delta-G solvation = -62.818288 kcal Electronic energy + Delta-G solvation = -25494.913738 eV Core-core repulsion = 21804.547097 eV Total energy + Delta-G solvation = -3690.366641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -47.59814 -40.03793 -37.82136 -37.27650 -34.77119 -33.67789 -31.46707 -29.60215 -29.34831 -27.94761 -27.17269 -26.76155 -25.40489 -23.26003 -22.21552 -21.04380 -20.59207 -19.37458 -17.91359 -17.12006 -16.14311 -15.78292 -15.43820 -15.14245 -14.80269 -14.71918 -14.46034 -14.25674 -14.24377 -14.08538 -13.48424 -13.34931 -12.96812 -12.76650 -12.64967 -12.43685 -12.18464 -11.93543 -11.66446 -11.58765 -11.27684 -11.17236 -11.08531 -11.06428 -10.78524 -10.63818 -10.56085 -10.51956 -10.29463 -9.91737 -9.61835 -9.24815 -8.63628 -7.86826 -7.43857 -7.07274 -6.79760 -4.45089 1.51705 1.70415 2.69560 2.84765 3.05057 3.06991 3.15431 3.65202 3.89333 4.03860 4.51579 4.77132 4.82538 5.05696 5.11556 5.20231 5.29717 5.33597 5.46413 5.49035 5.55908 5.59565 5.65583 5.68210 5.76745 5.79269 5.90337 5.92817 6.00953 6.17261 6.21301 6.27983 6.38283 6.56667 6.61631 6.70963 6.86979 6.92922 7.01264 7.08744 7.21208 7.52009 7.69992 7.77741 7.81494 7.92509 8.20550 8.52990 8.79777 8.82922 10.13423 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.003762 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.673435 B = 7441.922814 C = 8289.997978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.294 6.294 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.119 4.119 7 C -0.051 4.051 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.072 4.072 11 C -0.046 4.046 12 C -0.006 4.006 13 C -0.260 4.260 14 C 0.103 3.897 15 F -0.168 7.168 16 C -0.198 4.198 17 C 0.127 3.873 18 C -0.457 4.457 19 H 0.081 0.919 20 C 0.076 3.924 21 N -0.788 5.788 22 Si 0.910 3.090 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.188 4.188 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.283 0.717 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 13.756 0.207 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.206 6.206 3 C 0.087 3.913 4 C -0.229 4.229 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.069 4.069 8 C -0.200 4.200 9 C -0.200 4.200 10 C -0.090 4.090 11 C -0.047 4.047 12 C -0.006 4.006 13 C -0.280 4.280 14 C 0.084 3.916 15 F -0.147 7.147 16 C -0.218 4.218 17 C 0.124 3.876 18 C -0.486 4.486 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.413 5.413 22 Si 0.734 3.266 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.208 4.208 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.146 0.854 42 H 0.094 0.906 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.411 13.331 0.021 14.793 hybrid contribution -0.165 -0.621 0.268 0.696 sum -6.577 12.710 0.289 14.314 Atomic orbital electron populations 1.23015 0.79544 1.03767 1.00503 1.86317 1.20150 1.26129 1.88002 1.19079 0.91656 0.84286 0.96285 1.21069 0.99519 0.92278 1.10069 1.20599 0.93861 0.96425 0.99653 1.19586 0.93436 0.94405 1.04463 1.20019 0.99749 0.91811 0.95366 1.21854 1.01288 0.99390 0.97455 1.21855 1.01287 0.99386 0.97465 1.20993 0.99686 0.90077 0.98213 1.18382 0.89517 0.93880 1.02910 1.17852 0.94375 0.92052 0.96337 1.20203 1.03003 0.98788 1.06020 1.17538 0.87725 0.96198 0.90133 1.91330 1.60197 1.96400 1.66758 1.21320 1.01805 0.98944 0.99712 1.17282 0.88347 0.91271 0.90673 1.19529 1.34882 0.91150 1.03019 0.90040 1.25941 0.92443 0.99871 0.96051 1.69817 1.32416 1.20137 1.18942 0.86332 0.79910 0.78852 0.81458 1.18922 1.20283 1.18707 1.21042 1.01974 0.95608 1.02142 0.88384 0.93132 0.93254 0.85898 0.86550 0.90581 0.92523 0.92710 0.92771 0.92466 0.92778 0.92716 0.85463 0.88225 0.85397 0.90594 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.42 8.85 -19.23 -0.17 -5.59 16 3 C 0.13 2.37 6.59 -38.87 -0.26 2.11 16 4 C -0.21 -3.03 9.03 -39.47 -0.36 -3.39 16 5 C -0.09 -1.15 8.70 -39.55 -0.34 -1.49 16 6 C -0.12 -1.64 4.78 -104.65 -0.50 -2.14 16 7 C -0.05 -0.56 3.09 -91.77 -0.28 -0.84 16 8 C -0.14 -1.37 9.00 37.16 0.33 -1.03 16 9 C -0.14 -1.37 9.00 37.16 0.33 -1.03 16 10 C -0.07 -1.19 9.12 -39.27 -0.36 -1.55 16 11 C -0.05 -0.90 5.48 -104.76 -0.57 -1.47 16 12 C -0.01 -0.13 5.27 -104.99 -0.55 -0.69 16 13 C -0.26 -6.09 9.49 -38.89 -0.37 -6.46 16 14 C 0.10 2.60 7.28 -39.55 -0.29 2.32 16 15 F -0.17 -4.08 17.26 2.25 0.04 -4.04 16 16 C -0.20 -5.29 8.66 -38.75 -0.34 -5.63 16 17 C 0.13 3.39 5.56 -106.88 -0.59 2.79 16 18 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 19 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 20 C 0.08 1.88 5.14 -17.35 -0.09 1.79 16 21 N -0.79 -20.44 10.96 55.55 0.61 -19.83 16 22 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 26 C -0.19 -4.64 8.51 -38.52 -0.33 -4.97 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.56 7.67 -51.94 -0.40 0.16 16 29 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 30 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 31 H 0.12 1.23 7.07 -52.49 -0.37 0.86 16 32 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.05 0.50 7.38 -51.93 -0.38 0.11 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.49 7.37 -51.93 -0.38 0.11 16 39 H 0.13 2.02 7.92 -52.49 -0.42 1.61 16 40 H 0.10 2.14 8.03 -52.48 -0.42 1.72 16 41 H 0.13 3.55 6.18 -52.48 -0.32 3.22 16 42 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 43 H 0.10 2.41 7.69 -52.49 -0.40 2.00 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -28.67 359.60 -8.94 -37.61 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.90 Total: 5.68 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -3.91 Total: -32.66 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.61 Total: -19.83 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.17 Total: -5.59 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.67 -8.94 -37.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239663957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.205 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds