Wall clock time and date at job start Tue Mar 31 2020 10:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35837 * 116.99901 * 2 1 4 4 C 1.38591 * 120.11905 * 359.73004 * 3 2 1 5 5 C 1.38186 * 120.05968 * 179.71840 * 4 3 2 6 6 C 1.38384 * 120.30300 * 0.55387 * 5 4 3 7 7 C 1.50700 * 119.88166 * 179.74660 * 6 5 4 8 8 C 1.52997 * 109.46914 * 299.97630 * 7 6 5 9 9 C 1.53001 * 109.47200 * 59.97397 * 7 6 5 10 10 C 1.38014 * 120.23926 * 359.72292 * 6 5 4 11 11 C 1.39296 * 119.93022 * 359.97438 * 10 6 5 12 12 C 1.48348 * 120.14851 * 179.97438 * 11 10 6 13 13 C 1.39729 * 119.98922 * 310.02765 * 12 11 10 14 14 C 1.38613 * 120.34971 * 179.97438 * 13 12 11 15 15 F 1.35100 * 119.83570 * 179.97438 * 14 13 12 16 16 C 1.37944 * 120.32580 * 0.02562 * 14 13 12 17 17 C 1.40719 * 119.97710 * 0.02562 * 16 14 13 18 18 C 1.41421 * 120.17509 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00306 * 154.72842 * 18 17 16 20 20 C 1.39924 * 120.00111 * 334.73844 * 18 17 16 21 21 N 1.30835 * 119.99705 * 342.83414 * 20 18 17 22 22 Si 1.86798 * 120.00424 * 162.83635 * 20 18 17 23 23 H 1.48507 * 109.47132 * 59.99555 * 22 20 18 24 24 H 1.48497 * 109.47510 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47170 * 299.99882 * 22 20 18 26 26 C 1.38758 * 119.98928 * 129.75270 * 12 11 10 27 27 H 1.08997 * 109.46902 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47189 * 299.99661 * 1 2 3 29 29 H 1.09000 * 109.46875 * 60.00017 * 1 2 3 30 30 H 1.07993 * 119.96651 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.84789 * 180.27784 * 5 4 3 32 32 H 1.08998 * 109.47293 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.47508 * 299.99824 * 8 7 6 34 34 H 1.08998 * 109.47190 * 59.99877 * 8 7 6 35 35 H 1.09000 * 109.47187 * 180.02562 * 8 7 6 36 36 H 1.09008 * 109.46659 * 60.00600 * 9 7 6 37 37 H 1.09000 * 109.46743 * 180.02562 * 9 7 6 38 38 H 1.08998 * 109.47139 * 300.00267 * 9 7 6 39 39 H 1.07997 * 120.03348 * 180.02562 * 10 6 5 40 40 H 1.08007 * 119.82443 * 359.97438 * 13 12 11 41 41 H 1.08008 * 120.01106 * 179.97438 * 16 14 13 42 42 H 0.97006 * 119.99971 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.16529 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2932 2.3742 -0.0056 5 6 1.9218 3.6048 0.0002 6 6 3.3034 3.6832 0.0002 7 6 3.9790 5.0302 0.0009 8 6 3.5634 5.8098 -1.2482 9 6 3.5625 5.8091 1.2502 10 6 4.0649 2.5321 0.0001 11 6 3.4415 1.2864 0.0005 12 6 4.2553 0.0461 -0.0002 13 6 5.2885 -0.1109 -0.9277 14 6 6.0538 -1.2665 -0.9347 15 9 7.0499 -1.4076 -1.8364 16 6 5.8028 -2.2737 -0.0262 17 6 4.7650 -2.1306 0.9133 18 6 4.5036 -3.1607 1.8463 19 1 4.0287 -2.9286 2.7881 20 6 4.8604 -4.4807 1.5493 21 7 5.1176 -4.8266 0.3140 22 14 4.9694 -5.7490 2.9164 23 1 3.6474 -5.8756 3.5809 24 1 5.3628 -7.0615 2.3438 25 1 5.9842 -5.3184 3.9113 26 6 3.9939 -0.9555 0.9240 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2147 2.3193 -0.0105 31 1 1.3321 4.5096 0.0003 32 1 5.0605 4.8943 0.0013 33 1 3.8601 5.2550 -2.1384 34 1 2.4819 5.9457 -1.2486 35 1 4.0524 6.7840 -1.2480 36 1 3.8587 5.2536 2.1402 37 1 4.0509 6.7836 1.2504 38 1 2.4810 5.9450 1.2499 39 1 5.1429 2.5971 0.0005 40 1 5.4918 0.6724 -1.6430 41 1 6.4021 -3.1722 -0.0364 42 1 5.3646 -5.7418 0.1080 43 1 3.1990 -0.8345 1.6450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239663957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:22 Heat of formation + Delta-G solvation = -75.111187 kcal Electronic energy + Delta-G solvation = -25495.446799 eV Core-core repulsion = 21804.547097 eV Total energy + Delta-G solvation = -3690.899701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.59776 -41.28546 -39.15915 -38.90574 -36.09081 -35.27125 -32.96686 -31.51894 -30.57905 -29.45025 -27.89389 -27.88859 -27.34095 -24.59334 -23.46804 -22.65755 -22.32828 -20.68042 -19.36039 -18.66926 -17.69689 -17.34362 -16.76642 -16.67319 -16.47837 -16.34768 -16.26997 -16.04972 -15.38011 -15.15099 -14.69533 -14.49975 -14.35130 -14.21991 -13.94766 -13.59111 -13.53803 -13.27145 -12.98778 -12.86198 -12.80130 -12.76410 -12.44450 -12.22875 -12.12031 -12.09507 -11.88048 -11.76682 -11.57819 -11.50169 -11.28341 -11.09023 -10.03807 -9.44016 -9.25393 -8.72329 -8.66412 -6.46372 0.17842 0.51205 0.78534 1.03827 1.37485 1.49109 1.52277 2.18242 2.50945 2.58466 2.84822 3.53192 3.61348 3.83836 3.88775 4.01256 4.16248 4.27940 4.39849 4.41239 4.42300 4.46974 4.49515 4.63443 4.70857 4.73957 4.79382 4.88645 4.89693 4.98782 5.03444 5.07154 5.15031 5.19077 5.23547 5.34916 5.42379 5.45408 5.48469 5.61693 5.70841 5.78255 5.88343 5.94591 5.97826 6.24057 6.53886 6.61804 6.83028 6.84962 8.26810 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.003762 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.673435 B = 7441.922814 C = 8289.997978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.204 4.204 5 C -0.073 4.073 6 C -0.114 4.114 7 C -0.052 4.052 8 C -0.140 4.140 9 C -0.140 4.140 10 C -0.079 4.079 11 C -0.090 4.090 12 C 0.009 3.991 13 C -0.264 4.264 14 C 0.094 3.906 15 F -0.165 7.165 16 C -0.226 4.226 17 C 0.105 3.895 18 C -0.489 4.489 19 H 0.085 0.915 20 C 0.035 3.965 21 N -0.822 5.822 22 Si 0.988 3.012 23 H -0.255 1.255 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.202 4.202 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.291 0.709 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 16.158 0.765 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.072 3.928 4 C -0.222 4.222 5 C -0.091 4.091 6 C -0.114 4.114 7 C -0.070 4.070 8 C -0.197 4.197 9 C -0.197 4.197 10 C -0.097 4.097 11 C -0.091 4.091 12 C 0.008 3.992 13 C -0.284 4.284 14 C 0.075 3.925 15 F -0.144 7.144 16 C -0.247 4.247 17 C 0.102 3.898 18 C -0.517 4.517 19 H 0.103 0.897 20 C -0.181 4.181 21 N -0.447 5.447 22 Si 0.807 3.193 23 H -0.179 1.179 24 H -0.192 1.192 25 H -0.183 1.183 26 C -0.221 4.221 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.293 15.753 0.565 17.811 hybrid contribution 0.333 -1.200 0.030 1.245 sum -7.959 14.553 0.596 16.598 Atomic orbital electron populations 1.23300 0.77010 1.04883 1.02381 1.86249 1.23030 1.27199 1.88305 1.19254 0.91309 0.85307 0.96948 1.21402 1.00926 0.91330 1.08551 1.21061 0.93767 0.97364 0.96917 1.19921 0.93968 0.94764 1.02738 1.20091 0.99392 0.90548 0.97001 1.21838 1.02152 0.99775 0.95941 1.21841 1.02158 0.99778 0.95957 1.21057 0.99895 0.90185 0.98519 1.18374 0.90406 0.93136 1.07169 1.18184 0.93606 0.93014 0.94372 1.20455 1.02911 0.98493 1.06497 1.17718 0.88107 0.96626 0.90019 1.91319 1.60112 1.96454 1.66556 1.21211 1.02843 0.99147 1.01484 1.17615 0.88692 0.92416 0.91046 1.19830 1.36367 0.92217 1.03334 0.89730 1.26880 0.91184 1.01572 0.98486 1.69887 1.32678 1.21101 1.21050 0.85174 0.80239 0.75984 0.77878 1.17889 1.19184 1.18274 1.21096 1.02083 0.95972 1.02988 0.87896 0.91163 0.91240 0.82828 0.82813 0.91002 0.93609 0.91623 0.91039 0.93621 0.91032 0.91620 0.85802 0.86336 0.87176 0.89851 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.33 -12.39 8.85 -91.72 -0.81 -13.20 16 3 C 0.12 4.11 6.59 22.73 0.15 4.26 16 4 C -0.20 -5.26 9.03 22.34 0.20 -5.05 16 5 C -0.07 -1.65 8.70 22.29 0.19 -1.46 16 6 C -0.11 -2.87 4.78 -19.88 -0.10 -2.96 16 7 C -0.05 -0.99 3.09 -11.54 -0.04 -1.02 16 8 C -0.14 -2.18 9.00 71.98 0.65 -1.53 16 9 C -0.14 -2.20 9.00 71.98 0.65 -1.55 16 10 C -0.08 -2.57 9.12 22.47 0.20 -2.36 16 11 C -0.09 -3.54 5.48 -19.95 -0.11 -3.64 16 12 C 0.01 0.41 5.27 -20.10 -0.11 0.30 16 13 C -0.26 -12.78 9.49 22.72 0.22 -12.56 16 14 C 0.09 4.99 7.28 22.29 0.16 5.15 16 15 F -0.17 -8.33 17.26 44.97 0.78 -7.56 16 16 C -0.23 -12.88 8.66 22.81 0.20 -12.68 16 17 C 0.10 5.91 5.56 -21.32 -0.12 5.79 16 18 C -0.49 -26.77 9.05 23.46 0.21 -26.56 16 19 H 0.08 4.40 7.90 -2.91 -0.02 4.37 16 20 C 0.03 1.76 5.14 85.25 0.44 2.20 16 21 N -0.82 -44.26 10.96 21.82 0.24 -44.02 16 22 Si 0.99 38.29 29.59 68.60 2.03 40.32 16 23 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 C -0.20 -10.48 8.51 22.96 0.20 -10.28 16 27 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 1.38 7.67 -2.39 -0.02 1.37 16 29 H 0.07 1.36 7.65 -2.39 -0.02 1.35 16 30 H 0.15 2.95 6.30 -2.91 -0.02 2.93 16 31 H 0.15 2.36 7.07 -2.91 -0.02 2.34 16 32 H 0.07 1.43 7.87 -2.39 -0.02 1.41 16 33 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.88 7.38 -2.39 -0.02 0.86 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.89 7.37 -2.39 -0.02 0.87 16 39 H 0.12 3.98 7.92 -2.91 -0.02 3.96 16 40 H 0.12 5.18 8.03 -2.91 -0.02 5.15 16 41 H 0.11 6.53 6.18 -2.91 -0.02 6.51 16 42 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 43 H 0.10 5.03 7.69 -2.91 -0.02 5.01 16 Total: -1.00 -66.01 359.60 7.37 -58.64 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 1.02 Total: 28.21 kcal Atomic # 6 Polarization: -66.51 SS G_CDS: 4.12 Total: -62.40 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.24 Total: -44.02 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.81 Total: -13.20 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.78 Total: -7.56 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -66.01 7.37 -58.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239663957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.468 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds