Wall clock time and date at job start Tue Mar 31 2020 11:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46953 * 2 1 4 4 C 1.53001 * 109.47021 * 240.00150 * 2 1 3 5 5 C 1.50697 * 109.46900 * 120.00025 * 2 1 3 6 6 C 1.38317 * 119.92277 * 239.97529 * 5 2 1 7 7 C 1.38533 * 120.22861 * 180.02562 * 6 5 2 8 8 F 1.35104 * 119.96231 * 179.97438 * 7 6 5 9 9 C 1.38251 * 120.07440 * 359.67875 * 7 6 5 10 10 C 1.39341 * 119.84544 * 0.61857 * 9 7 6 11 11 C 1.48280 * 120.11245 * 179.67629 * 10 9 7 12 12 C 1.39290 * 120.15938 * 129.70698 * 11 10 9 13 13 C 1.38020 * 119.94633 * 179.97438 * 12 11 10 14 14 C 1.38444 * 120.27026 * 0.02562 * 13 12 11 15 15 C 1.38115 * 120.32407 * 0.02562 * 14 13 12 16 16 C 1.38757 * 120.05096 * 359.97036 * 15 14 13 17 17 O 1.35659 * 120.13674 * 180.02562 * 16 15 14 18 18 C 1.34813 * 117.00117 * 354.40745 * 17 16 15 19 19 H 1.08002 * 119.99678 * 5.06138 * 18 17 16 20 20 C 1.38649 * 119.99787 * 185.06125 * 18 17 16 21 21 N 1.31559 * 120.00522 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99651 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46849 * 60.00004 * 22 20 18 24 24 H 1.48497 * 109.47180 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47134 * 300.00234 * 22 20 18 26 26 C 1.37989 * 119.92309 * 60.00184 * 5 2 1 27 27 H 1.08999 * 109.46981 * 299.99966 * 1 2 3 28 28 H 1.09003 * 109.46966 * 60.00113 * 1 2 3 29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46793 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47392 * 300.00110 * 3 2 1 32 32 H 1.08999 * 109.47249 * 60.00198 * 3 2 1 33 33 H 1.08998 * 109.47159 * 299.99898 * 4 2 1 34 34 H 1.08997 * 109.47070 * 60.00046 * 4 2 1 35 35 H 1.09004 * 109.46656 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.88536 * 0.02562 * 6 5 2 37 37 H 1.07999 * 120.07850 * 180.29773 * 9 7 6 38 38 H 1.07998 * 120.02797 * 0.02562 * 12 11 10 39 39 H 1.07997 * 119.86497 * 180.02562 * 13 12 11 40 40 H 1.07994 * 119.83597 * 180.27042 * 14 13 12 41 41 H 1.07999 * 119.97351 * 180.02562 * 15 14 13 42 42 H 0.96995 * 119.99854 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.04207 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.8278 -0.0368 2.1396 7 6 3.2935 -0.6839 3.2726 8 9 4.0706 -0.0210 4.1569 9 6 2.9588 -2.0054 3.5025 10 6 2.1628 -2.6888 2.5856 11 6 1.8062 -4.1084 2.8227 12 6 0.4783 -4.5201 2.7374 13 6 0.1514 -5.8427 2.9584 14 6 1.1384 -6.7636 3.2655 15 6 2.4586 -6.3674 3.3539 16 6 2.8023 -5.0412 3.1342 17 8 4.0985 -4.6503 3.2202 18 6 4.9896 -5.5725 3.6357 19 1 4.6735 -6.5914 3.8041 20 6 6.3119 -5.2129 3.8469 21 7 6.6969 -3.9717 3.6423 22 14 7.5466 -6.4908 4.4235 23 1 7.6279 -7.5865 3.4245 24 1 8.8812 -5.8571 4.5736 25 1 7.1120 -7.0443 5.7311 26 6 1.6980 -2.0315 1.4472 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 3.0869 0.9971 1.9657 37 1 3.3179 -2.5085 4.3882 38 1 -0.2949 -3.8051 2.4977 39 1 -0.8786 -6.1605 2.8916 40 1 0.8753 -7.7975 3.4328 41 1 3.2241 -7.0907 3.5934 42 1 7.6219 -3.7202 3.7905 43 1 1.0774 -2.5560 0.7357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:40 Heat of formation + Delta-G solvation = -40.530506 kcal Electronic energy + Delta-G solvation = -25994.539730 eV Core-core repulsion = 22305.139559 eV Total energy + Delta-G solvation = -3689.400170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.28218 -39.73016 -38.80888 -36.53216 -35.80966 -32.38238 -31.77435 -29.54062 -29.22593 -28.45687 -27.20424 -26.98377 -25.40791 -23.09548 -22.62978 -21.27569 -20.69253 -18.93523 -18.01740 -17.14598 -16.46123 -15.82463 -15.62925 -15.02918 -14.87988 -14.56457 -14.47585 -14.32919 -14.14304 -13.78128 -13.63752 -13.58774 -12.93640 -12.67162 -12.57130 -12.43130 -12.08383 -11.76177 -11.70541 -11.65381 -11.54694 -11.37925 -11.30186 -10.97297 -10.92655 -10.84731 -10.71287 -10.53866 -10.47954 -10.27188 -9.40196 -8.90325 -8.69150 -8.09846 -7.87589 -7.19126 -6.48744 -4.07999 1.46876 1.75705 2.24505 2.33940 3.10684 3.11940 3.14763 3.92108 4.06842 4.51301 4.56332 4.80495 4.95101 5.03543 5.05306 5.17005 5.27166 5.38219 5.51581 5.54718 5.60820 5.62250 5.65848 5.75527 5.78293 5.83045 5.89485 5.90374 5.99778 6.04617 6.08154 6.21386 6.26389 6.36042 6.37272 6.57316 6.60982 6.64924 6.79949 6.89930 6.93116 7.08891 7.17057 7.30387 7.35557 7.48791 7.73478 7.93826 8.95278 9.62745 10.67376 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.004859 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.742354 B = 5760.620977 C = 7184.965075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.053 4.053 6 C -0.169 4.169 7 C 0.103 3.897 8 F -0.144 7.144 9 C -0.118 4.118 10 C 0.022 3.978 11 C -0.141 4.141 12 C -0.056 4.056 13 C -0.217 4.217 14 C -0.067 4.067 15 C -0.234 4.234 16 C 0.165 3.835 17 O -0.162 6.162 18 C -0.397 4.397 19 H 0.092 0.908 20 C 0.044 3.956 21 N -0.852 5.852 22 Si 0.939 3.061 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.272 0.728 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 5.499 -5.579 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.053 4.053 6 C -0.188 4.188 7 C 0.084 3.916 8 F -0.123 7.123 9 C -0.136 4.136 10 C 0.022 3.978 11 C -0.142 4.142 12 C -0.074 4.074 13 C -0.236 4.236 14 C -0.086 4.086 15 C -0.253 4.253 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.473 4.473 19 H 0.109 0.891 20 C -0.162 4.162 21 N -0.485 5.485 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.141 4.141 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.147 0.853 42 H 0.082 0.918 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.046 5.895 -5.576 12.914 hybrid contribution 0.941 -0.759 0.541 1.324 sum -9.105 5.136 -5.035 11.603 Atomic orbital electron populations 1.21886 0.93798 1.02181 1.01580 1.19441 0.95551 0.94845 0.92696 1.21965 1.01426 0.95085 1.01637 1.21897 1.01597 1.00346 0.95796 1.19346 0.97167 0.93676 0.95104 1.20967 1.02293 1.00933 0.94619 1.17555 0.93962 0.91066 0.89049 1.91464 1.72745 1.80605 1.67469 1.21235 0.98727 0.92163 1.01520 1.18354 0.94710 0.91980 0.92792 1.17784 0.92084 0.90829 1.13497 1.20697 0.93714 0.95543 0.97492 1.20519 0.98397 0.93604 1.11041 1.20830 0.92649 0.98325 0.96760 1.21121 0.96893 0.96209 1.11076 1.19316 0.85595 0.91725 0.92344 1.83986 1.11199 1.38922 1.72308 1.21295 0.88506 0.91153 1.46384 0.89085 1.25276 0.96970 0.97296 0.96670 1.70036 1.18024 1.16568 1.43915 0.85811 0.79048 0.79424 0.79356 1.19493 1.20238 1.19470 1.20970 1.02036 0.93872 0.97260 0.92513 0.92579 0.92245 0.92156 0.92573 0.92298 0.92191 0.92597 0.92287 0.85220 0.84637 0.86833 0.87422 0.87408 0.85341 0.91849 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.29 37.16 0.31 -1.10 16 2 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 3 C -0.14 -1.52 7.13 37.16 0.26 -1.25 16 4 C -0.14 -1.61 8.29 37.16 0.31 -1.30 16 5 C -0.05 -0.81 4.76 -104.69 -0.50 -1.31 16 6 C -0.17 -2.83 8.95 -39.44 -0.35 -3.19 16 7 C 0.10 2.04 7.29 -39.47 -0.29 1.75 16 8 F -0.14 -2.94 17.26 2.25 0.04 -2.90 16 9 C -0.12 -2.53 8.77 -39.17 -0.34 -2.87 16 10 C 0.02 0.44 5.27 -104.92 -0.55 -0.11 16 11 C -0.14 -2.92 5.49 -104.73 -0.57 -3.49 16 12 C -0.06 -0.99 9.51 -39.27 -0.37 -1.36 16 13 C -0.22 -3.62 10.03 -39.59 -0.40 -4.02 16 14 C -0.07 -1.20 10.03 -39.55 -0.40 -1.59 16 15 C -0.23 -4.95 9.16 -39.43 -0.36 -5.31 16 16 C 0.17 3.89 6.56 -38.74 -0.25 3.64 16 17 O -0.16 -4.43 8.13 0.38 0.00 -4.43 16 18 C -0.40 -10.79 9.49 30.88 0.29 -10.50 16 19 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16 20 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 21 N -0.85 -24.54 13.67 55.48 0.76 -23.78 16 22 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.12 -2.09 8.17 -39.23 -0.32 -2.41 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16 30 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 33 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.13 1.87 5.88 -52.49 -0.31 1.56 16 37 H 0.14 3.21 7.71 -52.49 -0.40 2.80 16 38 H 0.11 1.68 8.04 -52.49 -0.42 1.26 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.12 1.84 7.07 -52.49 -0.37 1.47 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -29.49 357.91 -8.31 -37.81 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.72 Total: 6.49 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: -3.77 Total: -33.79 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.76 Total: -23.78 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: 0.00 Total: -4.43 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.49 -8.31 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.725 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds