Wall clock time and date at job start Tue Mar 31 2020 11:04:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53003 * 109.46953 * 2 1
4 4 C 1.53001 * 109.47021 * 240.00150 * 2 1 3
5 5 C 1.50697 * 109.46900 * 120.00025 * 2 1 3
6 6 C 1.38317 * 119.92277 * 239.97529 * 5 2 1
7 7 C 1.38533 * 120.22861 * 180.02562 * 6 5 2
8 8 F 1.35104 * 119.96231 * 179.97438 * 7 6 5
9 9 C 1.38251 * 120.07440 * 359.67875 * 7 6 5
10 10 C 1.39341 * 119.84544 * 0.61857 * 9 7 6
11 11 C 1.48280 * 120.11245 * 179.67629 * 10 9 7
12 12 C 1.39290 * 120.15938 * 129.70698 * 11 10 9
13 13 C 1.38020 * 119.94633 * 179.97438 * 12 11 10
14 14 C 1.38444 * 120.27026 * 0.02562 * 13 12 11
15 15 C 1.38115 * 120.32407 * 0.02562 * 14 13 12
16 16 C 1.38757 * 120.05096 * 359.97036 * 15 14 13
17 17 O 1.35659 * 120.13674 * 180.02562 * 16 15 14
18 18 C 1.34813 * 117.00117 * 354.40745 * 17 16 15
19 19 H 1.08002 * 119.99678 * 5.06138 * 18 17 16
20 20 C 1.38649 * 119.99787 * 185.06125 * 18 17 16
21 21 N 1.31559 * 120.00522 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99651 * 179.97438 * 20 18 17
23 23 H 1.48494 * 109.46849 * 60.00004 * 22 20 18
24 24 H 1.48497 * 109.47180 * 180.02562 * 22 20 18
25 25 H 1.48498 * 109.47134 * 300.00234 * 22 20 18
26 26 C 1.37989 * 119.92309 * 60.00184 * 5 2 1
27 27 H 1.08999 * 109.46981 * 299.99966 * 1 2 3
28 28 H 1.09003 * 109.46966 * 60.00113 * 1 2 3
29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3
30 30 H 1.08995 * 109.46793 * 180.02562 * 3 2 1
31 31 H 1.08997 * 109.47392 * 300.00110 * 3 2 1
32 32 H 1.08999 * 109.47249 * 60.00198 * 3 2 1
33 33 H 1.08998 * 109.47159 * 299.99898 * 4 2 1
34 34 H 1.08997 * 109.47070 * 60.00046 * 4 2 1
35 35 H 1.09004 * 109.46656 * 180.02562 * 4 2 1
36 36 H 1.08001 * 119.88536 * 0.02562 * 6 5 2
37 37 H 1.07999 * 120.07850 * 180.29773 * 9 7 6
38 38 H 1.07998 * 120.02797 * 0.02562 * 12 11 10
39 39 H 1.07997 * 119.86497 * 180.02562 * 13 12 11
40 40 H 1.07994 * 119.83597 * 180.27042 * 14 13 12
41 41 H 1.07999 * 119.97351 * 180.02562 * 15 14 13
42 42 H 0.96995 * 119.99854 * 179.97438 * 21 20 18
43 43 H 1.08001 * 120.04207 * 0.02562 * 26 5 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0323 -0.7104 1.2305
6 6 2.8278 -0.0368 2.1396
7 6 3.2935 -0.6839 3.2726
8 9 4.0706 -0.0210 4.1569
9 6 2.9588 -2.0054 3.5025
10 6 2.1628 -2.6888 2.5856
11 6 1.8062 -4.1084 2.8227
12 6 0.4783 -4.5201 2.7374
13 6 0.1514 -5.8427 2.9584
14 6 1.1384 -6.7636 3.2655
15 6 2.4586 -6.3674 3.3539
16 6 2.8023 -5.0412 3.1342
17 8 4.0985 -4.6503 3.2202
18 6 4.9896 -5.5725 3.6357
19 1 4.6735 -6.5914 3.8041
20 6 6.3119 -5.2129 3.8469
21 7 6.6969 -3.9717 3.6423
22 14 7.5466 -6.4908 4.4235
23 1 7.6279 -7.5865 3.4245
24 1 8.8812 -5.8571 4.5736
25 1 7.1120 -7.0443 5.7311
26 6 1.6980 -2.0315 1.4472
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9564 -0.8899
32 1 1.6767 1.9564 0.8900
33 1 1.6767 -1.7489 -1.2493
34 1 1.6767 -0.2074 -2.1392
35 1 3.1301 -0.7216 -1.2490
36 1 3.0869 0.9971 1.9657
37 1 3.3179 -2.5085 4.3882
38 1 -0.2949 -3.8051 2.4977
39 1 -0.8786 -6.1605 2.8916
40 1 0.8753 -7.7975 3.4328
41 1 3.2241 -7.0907 3.5934
42 1 7.6219 -3.7202 3.7905
43 1 1.0774 -2.5560 0.7357
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001243587647.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:40
Heat of formation + Delta-G solvation = -40.530506 kcal
Electronic energy + Delta-G solvation = -25994.539730 eV
Core-core repulsion = 22305.139559 eV
Total energy + Delta-G solvation = -3689.400170 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-48.28218 -39.73016 -38.80888 -36.53216 -35.80966 -32.38238 -31.77435 -29.54062
-29.22593 -28.45687 -27.20424 -26.98377 -25.40791 -23.09548 -22.62978 -21.27569
-20.69253 -18.93523 -18.01740 -17.14598 -16.46123 -15.82463 -15.62925 -15.02918
-14.87988 -14.56457 -14.47585 -14.32919 -14.14304 -13.78128 -13.63752 -13.58774
-12.93640 -12.67162 -12.57130 -12.43130 -12.08383 -11.76177 -11.70541 -11.65381
-11.54694 -11.37925 -11.30186 -10.97297 -10.92655 -10.84731 -10.71287 -10.53866
-10.47954 -10.27188 -9.40196 -8.90325 -8.69150 -8.09846 -7.87589 -7.19126
-6.48744 -4.07999 1.46876 1.75705 2.24505 2.33940 3.10684 3.11940
3.14763 3.92108 4.06842 4.51301 4.56332 4.80495 4.95101 5.03543
5.05306 5.17005 5.27166 5.38219 5.51581 5.54718 5.60820 5.62250
5.65848 5.75527 5.78293 5.83045 5.89485 5.90374 5.99778 6.04617
6.08154 6.21386 6.26389 6.36042 6.37272 6.57316 6.60982 6.64924
6.79949 6.89930 6.93116 7.08891 7.17057 7.30387 7.35557 7.48791
7.73478 7.93826 8.95278 9.62745 10.67376
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.011913 B = 0.004859 C = 0.003896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2349.742354 B = 5760.620977 C = 7184.965075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.025 4.025
3 C -0.144 4.144
4 C -0.139 4.139
5 C -0.053 4.053
6 C -0.169 4.169
7 C 0.103 3.897
8 F -0.144 7.144
9 C -0.118 4.118
10 C 0.022 3.978
11 C -0.141 4.141
12 C -0.056 4.056
13 C -0.217 4.217
14 C -0.067 4.067
15 C -0.234 4.234
16 C 0.165 3.835
17 O -0.162 6.162
18 C -0.397 4.397
19 H 0.092 0.908
20 C 0.044 3.956
21 N -0.852 5.852
22 Si 0.939 3.061
23 H -0.270 1.270
24 H -0.278 1.278
25 H -0.270 1.270
26 C -0.123 4.123
27 H 0.056 0.944
28 H 0.055 0.945
29 H 0.058 0.942
30 H 0.059 0.941
31 H 0.055 0.945
32 H 0.058 0.942
33 H 0.059 0.941
34 H 0.055 0.945
35 H 0.058 0.942
36 H 0.130 0.870
37 H 0.136 0.864
38 H 0.114 0.886
39 H 0.108 0.892
40 H 0.108 0.892
41 H 0.129 0.871
42 H 0.272 0.728
43 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.447 5.499 -5.579 13.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.025 4.025
3 C -0.201 4.201
4 C -0.196 4.196
5 C -0.053 4.053
6 C -0.188 4.188
7 C 0.084 3.916
8 F -0.123 7.123
9 C -0.136 4.136
10 C 0.022 3.978
11 C -0.142 4.142
12 C -0.074 4.074
13 C -0.236 4.236
14 C -0.086 4.086
15 C -0.253 4.253
16 C 0.110 3.890
17 O -0.064 6.064
18 C -0.473 4.473
19 H 0.109 0.891
20 C -0.162 4.162
21 N -0.485 5.485
22 Si 0.764 3.236
23 H -0.195 1.195
24 H -0.202 1.202
25 H -0.195 1.195
26 C -0.141 4.141
27 H 0.075 0.925
28 H 0.074 0.926
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.078 0.922
34 H 0.074 0.926
35 H 0.077 0.923
36 H 0.148 0.852
37 H 0.154 0.846
38 H 0.132 0.868
39 H 0.126 0.874
40 H 0.126 0.874
41 H 0.147 0.853
42 H 0.082 0.918
43 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -10.046 5.895 -5.576 12.914
hybrid contribution 0.941 -0.759 0.541 1.324
sum -9.105 5.136 -5.035 11.603
Atomic orbital electron populations
1.21886 0.93798 1.02181 1.01580 1.19441 0.95551 0.94845 0.92696
1.21965 1.01426 0.95085 1.01637 1.21897 1.01597 1.00346 0.95796
1.19346 0.97167 0.93676 0.95104 1.20967 1.02293 1.00933 0.94619
1.17555 0.93962 0.91066 0.89049 1.91464 1.72745 1.80605 1.67469
1.21235 0.98727 0.92163 1.01520 1.18354 0.94710 0.91980 0.92792
1.17784 0.92084 0.90829 1.13497 1.20697 0.93714 0.95543 0.97492
1.20519 0.98397 0.93604 1.11041 1.20830 0.92649 0.98325 0.96760
1.21121 0.96893 0.96209 1.11076 1.19316 0.85595 0.91725 0.92344
1.83986 1.11199 1.38922 1.72308 1.21295 0.88506 0.91153 1.46384
0.89085 1.25276 0.96970 0.97296 0.96670 1.70036 1.18024 1.16568
1.43915 0.85811 0.79048 0.79424 0.79356 1.19493 1.20238 1.19470
1.20970 1.02036 0.93872 0.97260 0.92513 0.92579 0.92245 0.92156
0.92573 0.92298 0.92191 0.92597 0.92287 0.85220 0.84637 0.86833
0.87422 0.87408 0.85341 0.91849 0.86010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.41 8.29 37.16 0.31 -1.10 16
2 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16
3 C -0.14 -1.52 7.13 37.16 0.26 -1.25 16
4 C -0.14 -1.61 8.29 37.16 0.31 -1.30 16
5 C -0.05 -0.81 4.76 -104.69 -0.50 -1.31 16
6 C -0.17 -2.83 8.95 -39.44 -0.35 -3.19 16
7 C 0.10 2.04 7.29 -39.47 -0.29 1.75 16
8 F -0.14 -2.94 17.26 2.25 0.04 -2.90 16
9 C -0.12 -2.53 8.77 -39.17 -0.34 -2.87 16
10 C 0.02 0.44 5.27 -104.92 -0.55 -0.11 16
11 C -0.14 -2.92 5.49 -104.73 -0.57 -3.49 16
12 C -0.06 -0.99 9.51 -39.27 -0.37 -1.36 16
13 C -0.22 -3.62 10.03 -39.59 -0.40 -4.02 16
14 C -0.07 -1.20 10.03 -39.55 -0.40 -1.59 16
15 C -0.23 -4.95 9.16 -39.43 -0.36 -5.31 16
16 C 0.17 3.89 6.56 -38.74 -0.25 3.64 16
17 O -0.16 -4.43 8.13 0.38 0.00 -4.43 16
18 C -0.40 -10.79 9.49 30.88 0.29 -10.50 16
19 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16
20 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16
21 N -0.85 -24.54 13.67 55.48 0.76 -23.78 16
22 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16
23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16
24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16
26 C -0.12 -2.09 8.17 -39.23 -0.32 -2.41 16
27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
29 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16
30 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16
31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16
33 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16
34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.13 1.87 5.88 -52.49 -0.31 1.56 16
37 H 0.14 3.21 7.71 -52.49 -0.40 2.80 16
38 H 0.11 1.68 8.04 -52.49 -0.42 1.26 16
39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16
40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16
41 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16
42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
43 H 0.12 1.84 7.07 -52.49 -0.37 1.47 16
LS Contribution 357.91 15.07 5.39 5.39
Total: -1.00 -29.49 357.91 -8.31 -37.81
By element:
Atomic # 1 Polarization: 12.20 SS G_CDS: -5.72 Total: 6.49 kcal
Atomic # 6 Polarization: -30.03 SS G_CDS: -3.77 Total: -33.79 kcal
Atomic # 7 Polarization: -24.54 SS G_CDS: 0.76 Total: -23.78 kcal
Atomic # 8 Polarization: -4.43 SS G_CDS: 0.00 Total: -4.43 kcal
Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal
Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -29.49 -8.31 -37.81 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243587647.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.725 kcal
(2) G-P(sol) polarization free energy of solvation -29.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds