Wall clock time and date at job start Tue Mar 31 2020 11:04:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53003 * 109.46953 * 2 1
4 4 C 1.53001 * 109.47021 * 240.00150 * 2 1 3
5 5 C 1.50697 * 109.46900 * 120.00025 * 2 1 3
6 6 C 1.38317 * 119.92277 * 239.97529 * 5 2 1
7 7 C 1.38533 * 120.22861 * 180.02562 * 6 5 2
8 8 F 1.35104 * 119.96231 * 179.97438 * 7 6 5
9 9 C 1.38251 * 120.07440 * 359.67875 * 7 6 5
10 10 C 1.39341 * 119.84544 * 0.61857 * 9 7 6
11 11 C 1.48280 * 120.11245 * 179.67629 * 10 9 7
12 12 C 1.39290 * 120.15938 * 129.70698 * 11 10 9
13 13 C 1.38020 * 119.94633 * 179.97438 * 12 11 10
14 14 C 1.38444 * 120.27026 * 0.02562 * 13 12 11
15 15 C 1.38115 * 120.32407 * 0.02562 * 14 13 12
16 16 C 1.38757 * 120.05096 * 359.97036 * 15 14 13
17 17 O 1.35659 * 120.13674 * 180.02562 * 16 15 14
18 18 C 1.34813 * 117.00117 * 354.40745 * 17 16 15
19 19 H 1.08002 * 119.99678 * 5.06138 * 18 17 16
20 20 C 1.38649 * 119.99787 * 185.06125 * 18 17 16
21 21 N 1.31559 * 120.00522 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99651 * 179.97438 * 20 18 17
23 23 H 1.48494 * 109.46849 * 60.00004 * 22 20 18
24 24 H 1.48497 * 109.47180 * 180.02562 * 22 20 18
25 25 H 1.48498 * 109.47134 * 300.00234 * 22 20 18
26 26 C 1.37989 * 119.92309 * 60.00184 * 5 2 1
27 27 H 1.08999 * 109.46981 * 299.99966 * 1 2 3
28 28 H 1.09003 * 109.46966 * 60.00113 * 1 2 3
29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3
30 30 H 1.08995 * 109.46793 * 180.02562 * 3 2 1
31 31 H 1.08997 * 109.47392 * 300.00110 * 3 2 1
32 32 H 1.08999 * 109.47249 * 60.00198 * 3 2 1
33 33 H 1.08998 * 109.47159 * 299.99898 * 4 2 1
34 34 H 1.08997 * 109.47070 * 60.00046 * 4 2 1
35 35 H 1.09004 * 109.46656 * 180.02562 * 4 2 1
36 36 H 1.08001 * 119.88536 * 0.02562 * 6 5 2
37 37 H 1.07999 * 120.07850 * 180.29773 * 9 7 6
38 38 H 1.07998 * 120.02797 * 0.02562 * 12 11 10
39 39 H 1.07997 * 119.86497 * 180.02562 * 13 12 11
40 40 H 1.07994 * 119.83597 * 180.27042 * 14 13 12
41 41 H 1.07999 * 119.97351 * 180.02562 * 15 14 13
42 42 H 0.96995 * 119.99854 * 179.97438 * 21 20 18
43 43 H 1.08001 * 120.04207 * 0.02562 * 26 5 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0323 -0.7104 1.2305
6 6 2.8278 -0.0368 2.1396
7 6 3.2935 -0.6839 3.2726
8 9 4.0706 -0.0210 4.1569
9 6 2.9588 -2.0054 3.5025
10 6 2.1628 -2.6888 2.5856
11 6 1.8062 -4.1084 2.8227
12 6 0.4783 -4.5201 2.7374
13 6 0.1514 -5.8427 2.9584
14 6 1.1384 -6.7636 3.2655
15 6 2.4586 -6.3674 3.3539
16 6 2.8023 -5.0412 3.1342
17 8 4.0985 -4.6503 3.2202
18 6 4.9896 -5.5725 3.6357
19 1 4.6735 -6.5914 3.8041
20 6 6.3119 -5.2129 3.8469
21 7 6.6969 -3.9717 3.6423
22 14 7.5466 -6.4908 4.4235
23 1 7.6279 -7.5865 3.4245
24 1 8.8812 -5.8571 4.5736
25 1 7.1120 -7.0443 5.7311
26 6 1.6980 -2.0315 1.4472
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9564 -0.8899
32 1 1.6767 1.9564 0.8900
33 1 1.6767 -1.7489 -1.2493
34 1 1.6767 -0.2074 -2.1392
35 1 3.1301 -0.7216 -1.2490
36 1 3.0869 0.9971 1.9657
37 1 3.3179 -2.5085 4.3882
38 1 -0.2949 -3.8051 2.4977
39 1 -0.8786 -6.1605 2.8916
40 1 0.8753 -7.7975 3.4328
41 1 3.2241 -7.0907 3.5934
42 1 7.6219 -3.7202 3.7905
43 1 1.0774 -2.5560 0.7357
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001243587647.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:39
Heat of formation + Delta-G solvation = -54.355605 kcal
Electronic energy + Delta-G solvation = -25995.139231 eV
Core-core repulsion = 22305.139559 eV
Total energy + Delta-G solvation = -3689.999672 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-49.89257 -41.21202 -40.27676 -38.15445 -37.05821 -34.31320 -33.26426 -30.95447
-30.72014 -29.90951 -28.04469 -28.00665 -27.33393 -24.52653 -24.06437 -22.86442
-22.17755 -20.19210 -19.81748 -18.71832 -17.98877 -17.32562 -17.06457 -16.62339
-16.51069 -16.19081 -16.03553 -15.68613 -15.33777 -15.19205 -15.04829 -14.81597
-14.48137 -14.28568 -13.98065 -13.57328 -13.43939 -13.13061 -13.01790 -12.97338
-12.74750 -12.57430 -12.50909 -12.47718 -12.42265 -12.24636 -12.13661 -11.76640
-11.65439 -11.49680 -11.13120 -10.81302 -10.18413 -9.57360 -9.39542 -8.85041
-8.46498 -6.14083 -0.02048 0.27067 0.70003 0.81291 1.31954 1.42698
1.47717 2.15089 2.59595 2.85750 3.17278 3.24595 3.47295 3.66306
3.67336 4.05901 4.09163 4.15232 4.18835 4.21945 4.28802 4.34085
4.40588 4.56167 4.67179 4.79166 4.82989 4.85928 4.95629 5.01472
5.04022 5.08093 5.08760 5.11344 5.17038 5.21696 5.27605 5.34162
5.37367 5.47928 5.50859 5.60833 5.67040 5.73244 5.76482 5.96864
6.04084 6.22565 6.97129 7.78122 8.74422
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.011913 B = 0.004859 C = 0.003896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2349.742354 B = 5760.620977 C = 7184.965075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.024 4.024
3 C -0.146 4.146
4 C -0.140 4.140
5 C -0.041 4.041
6 C -0.162 4.162
7 C 0.080 3.920
8 F -0.155 7.155
9 C -0.147 4.147
10 C 0.004 3.996
11 C -0.150 4.150
12 C -0.054 4.054
13 C -0.191 4.191
14 C -0.066 4.066
15 C -0.250 4.250
16 C 0.124 3.876
17 O -0.212 6.212
18 C -0.416 4.416
19 H 0.100 0.900
20 C -0.018 4.018
21 N -0.912 5.912
22 Si 1.013 2.987
23 H -0.256 1.256
24 H -0.274 1.274
25 H -0.259 1.259
26 C -0.115 4.115
27 H 0.056 0.944
28 H 0.079 0.921
29 H 0.060 0.940
30 H 0.050 0.950
31 H 0.080 0.920
32 H 0.062 0.938
33 H 0.055 0.945
34 H 0.083 0.917
35 H 0.041 0.959
36 H 0.156 0.844
37 H 0.093 0.907
38 H 0.150 0.850
39 H 0.156 0.844
40 H 0.146 0.854
41 H 0.119 0.881
42 H 0.270 0.730
43 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.004 5.109 -7.630 16.746
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.024 4.024
3 C -0.203 4.203
4 C -0.197 4.197
5 C -0.041 4.041
6 C -0.180 4.180
7 C 0.061 3.939
8 F -0.134 7.134
9 C -0.166 4.166
10 C 0.003 3.997
11 C -0.151 4.151
12 C -0.072 4.072
13 C -0.209 4.209
14 C -0.083 4.083
15 C -0.269 4.269
16 C 0.072 3.928
17 O -0.117 6.117
18 C -0.492 4.492
19 H 0.118 0.882
20 C -0.216 4.216
21 N -0.549 5.549
22 Si 0.833 3.167
23 H -0.181 1.181
24 H -0.199 1.199
25 H -0.183 1.183
26 C -0.133 4.133
27 H 0.075 0.925
28 H 0.098 0.902
29 H 0.079 0.921
30 H 0.069 0.931
31 H 0.099 0.901
32 H 0.081 0.919
33 H 0.074 0.926
34 H 0.102 0.898
35 H 0.060 0.940
36 H 0.173 0.827
37 H 0.111 0.889
38 H 0.168 0.832
39 H 0.173 0.827
40 H 0.164 0.836
41 H 0.136 0.864
42 H 0.079 0.921
43 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -13.670 5.480 -7.631 16.587
hybrid contribution 1.667 -0.634 1.096 2.093
sum -12.003 4.846 -6.535 14.500
Atomic orbital electron populations
1.21885 0.91817 1.02707 1.02810 1.19572 0.97022 0.95228 0.90595
1.21991 1.00944 0.94244 1.03099 1.21920 1.00586 1.00526 0.96676
1.19870 0.95211 0.93209 0.95788 1.21290 1.01460 1.02044 0.93205
1.17853 0.94864 0.90908 0.90312 1.91421 1.73242 1.80638 1.68122
1.21049 1.00913 0.93243 1.01420 1.18519 0.95325 0.92061 0.93763
1.18214 0.93091 0.90864 1.12948 1.21165 0.92764 0.97027 0.96255
1.21132 1.00312 0.92631 1.06803 1.21268 0.91092 1.00632 0.95348
1.21272 0.98692 0.95168 1.11797 1.19958 0.85240 0.93628 0.93928
1.83977 1.12828 1.39682 1.75223 1.21767 0.89246 0.91769 1.46467
0.88239 1.26494 0.98858 0.99536 0.96741 1.70207 1.18280 1.19142
1.47248 0.84725 0.76018 0.76675 0.79304 1.18069 1.19903 1.18338
1.21215 1.01542 0.94453 0.96120 0.92527 0.90194 0.92104 0.93051
0.90125 0.91926 0.92555 0.89842 0.93973 0.82666 0.88880 0.83225
0.82672 0.83642 0.86355 0.92114 0.83503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.21 8.29 71.98 0.60 -1.61 16
2 C -0.02 -0.50 0.85 -52.93 -0.05 -0.55 16
3 C -0.15 -2.61 7.13 71.98 0.51 -2.09 16
4 C -0.14 -2.83 8.29 71.98 0.60 -2.23 16
5 C -0.04 -1.20 4.76 -19.91 -0.09 -1.29 16
6 C -0.16 -5.42 8.95 22.36 0.20 -5.22 16
7 C 0.08 3.37 7.29 22.34 0.16 3.53 16
8 F -0.16 -6.86 17.26 44.97 0.78 -6.08 16
9 C -0.15 -6.90 8.77 22.54 0.20 -6.70 16
10 C 0.00 0.15 5.27 -20.05 -0.11 0.04 16
11 C -0.15 -6.32 5.49 -19.93 -0.11 -6.43 16
12 C -0.05 -1.75 9.51 22.47 0.21 -1.54 16
13 C -0.19 -5.50 10.03 22.27 0.22 -5.28 16
14 C -0.07 -2.15 10.03 22.29 0.22 -1.92 16
15 C -0.25 -10.75 9.16 22.36 0.20 -10.54 16
16 C 0.12 6.13 6.56 22.81 0.15 6.28 16
17 O -0.21 -12.58 8.13 -21.55 -0.18 -12.76 16
18 C -0.42 -24.28 9.49 67.92 0.64 -23.64 16
19 H 0.10 5.33 5.21 -2.91 -0.02 5.31 16
20 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16
21 N -0.91 -56.81 13.67 21.61 0.30 -56.52 16
22 Si 1.01 43.62 29.55 68.60 2.03 45.64 16
23 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16
24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16
26 C -0.12 -3.80 8.17 22.50 0.18 -3.62 16
27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
29 H 0.06 0.99 7.38 -2.39 -0.02 0.97 16
30 H 0.05 1.02 7.51 -2.39 -0.02 1.00 16
31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
32 H 0.06 1.08 7.51 -2.39 -0.02 1.06 16
33 H 0.06 1.17 7.38 -2.39 -0.02 1.16 16
34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
36 H 0.16 4.33 5.88 -2.91 -0.02 4.31 16
37 H 0.09 5.04 7.71 -2.91 -0.02 5.02 16
38 H 0.15 3.73 8.04 -2.91 -0.02 3.71 16
39 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16
40 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16
41 H 0.12 5.19 5.64 -2.91 -0.02 5.18 16
42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
43 H 0.15 4.04 7.07 -2.91 -0.02 4.02 16
Total: -1.00 -72.93 357.91 8.16 -64.76
By element:
Atomic # 1 Polarization: 27.29 SS G_CDS: 1.02 Total: 28.31 kcal
Atomic # 6 Polarization: -67.57 SS G_CDS: 4.22 Total: -63.35 kcal
Atomic # 7 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.52 kcal
Atomic # 8 Polarization: -12.58 SS G_CDS: -0.18 Total: -12.76 kcal
Atomic # 9 Polarization: -6.86 SS G_CDS: 0.78 Total: -6.08 kcal
Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal
Total: -72.93 8.16 -64.76 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243587647.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.405 kcal
(2) G-P(sol) polarization free energy of solvation -72.925 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.520 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds