Wall clock time and date at job start Tue Mar 31 2020 11:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46953 * 2 1 4 4 C 1.53001 * 109.47021 * 240.00150 * 2 1 3 5 5 C 1.50697 * 109.46900 * 120.00025 * 2 1 3 6 6 C 1.38317 * 119.92277 * 239.97529 * 5 2 1 7 7 C 1.38533 * 120.22861 * 180.02562 * 6 5 2 8 8 F 1.35104 * 119.96231 * 179.97438 * 7 6 5 9 9 C 1.38251 * 120.07440 * 359.67875 * 7 6 5 10 10 C 1.39341 * 119.84544 * 0.61857 * 9 7 6 11 11 C 1.48280 * 120.11245 * 179.67629 * 10 9 7 12 12 C 1.39290 * 120.15938 * 129.70698 * 11 10 9 13 13 C 1.38020 * 119.94633 * 179.97438 * 12 11 10 14 14 C 1.38444 * 120.27026 * 0.02562 * 13 12 11 15 15 C 1.38115 * 120.32407 * 0.02562 * 14 13 12 16 16 C 1.38757 * 120.05096 * 359.97036 * 15 14 13 17 17 O 1.35659 * 120.13674 * 180.02562 * 16 15 14 18 18 C 1.34813 * 117.00117 * 354.40745 * 17 16 15 19 19 H 1.08002 * 119.99678 * 5.06138 * 18 17 16 20 20 C 1.38649 * 119.99787 * 185.06125 * 18 17 16 21 21 N 1.31559 * 120.00522 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99651 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46849 * 60.00004 * 22 20 18 24 24 H 1.48497 * 109.47180 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47134 * 300.00234 * 22 20 18 26 26 C 1.37989 * 119.92309 * 60.00184 * 5 2 1 27 27 H 1.08999 * 109.46981 * 299.99966 * 1 2 3 28 28 H 1.09003 * 109.46966 * 60.00113 * 1 2 3 29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46793 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47392 * 300.00110 * 3 2 1 32 32 H 1.08999 * 109.47249 * 60.00198 * 3 2 1 33 33 H 1.08998 * 109.47159 * 299.99898 * 4 2 1 34 34 H 1.08997 * 109.47070 * 60.00046 * 4 2 1 35 35 H 1.09004 * 109.46656 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.88536 * 0.02562 * 6 5 2 37 37 H 1.07999 * 120.07850 * 180.29773 * 9 7 6 38 38 H 1.07998 * 120.02797 * 0.02562 * 12 11 10 39 39 H 1.07997 * 119.86497 * 180.02562 * 13 12 11 40 40 H 1.07994 * 119.83597 * 180.27042 * 14 13 12 41 41 H 1.07999 * 119.97351 * 180.02562 * 15 14 13 42 42 H 0.96995 * 119.99854 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.04207 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.8278 -0.0368 2.1396 7 6 3.2935 -0.6839 3.2726 8 9 4.0706 -0.0210 4.1569 9 6 2.9588 -2.0054 3.5025 10 6 2.1628 -2.6888 2.5856 11 6 1.8062 -4.1084 2.8227 12 6 0.4783 -4.5201 2.7374 13 6 0.1514 -5.8427 2.9584 14 6 1.1384 -6.7636 3.2655 15 6 2.4586 -6.3674 3.3539 16 6 2.8023 -5.0412 3.1342 17 8 4.0985 -4.6503 3.2202 18 6 4.9896 -5.5725 3.6357 19 1 4.6735 -6.5914 3.8041 20 6 6.3119 -5.2129 3.8469 21 7 6.6969 -3.9717 3.6423 22 14 7.5466 -6.4908 4.4235 23 1 7.6279 -7.5865 3.4245 24 1 8.8812 -5.8571 4.5736 25 1 7.1120 -7.0443 5.7311 26 6 1.6980 -2.0315 1.4472 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 3.0869 0.9971 1.9657 37 1 3.3179 -2.5085 4.3882 38 1 -0.2949 -3.8051 2.4977 39 1 -0.8786 -6.1605 2.8916 40 1 0.8753 -7.7975 3.4328 41 1 3.2241 -7.0907 3.5934 42 1 7.6219 -3.7202 3.7905 43 1 1.0774 -2.5560 0.7357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:39 Heat of formation + Delta-G solvation = -54.355605 kcal Electronic energy + Delta-G solvation = -25995.139231 eV Core-core repulsion = 22305.139559 eV Total energy + Delta-G solvation = -3689.999672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.89257 -41.21202 -40.27676 -38.15445 -37.05821 -34.31320 -33.26426 -30.95447 -30.72014 -29.90951 -28.04469 -28.00665 -27.33393 -24.52653 -24.06437 -22.86442 -22.17755 -20.19210 -19.81748 -18.71832 -17.98877 -17.32562 -17.06457 -16.62339 -16.51069 -16.19081 -16.03553 -15.68613 -15.33777 -15.19205 -15.04829 -14.81597 -14.48137 -14.28568 -13.98065 -13.57328 -13.43939 -13.13061 -13.01790 -12.97338 -12.74750 -12.57430 -12.50909 -12.47718 -12.42265 -12.24636 -12.13661 -11.76640 -11.65439 -11.49680 -11.13120 -10.81302 -10.18413 -9.57360 -9.39542 -8.85041 -8.46498 -6.14083 -0.02048 0.27067 0.70003 0.81291 1.31954 1.42698 1.47717 2.15089 2.59595 2.85750 3.17278 3.24595 3.47295 3.66306 3.67336 4.05901 4.09163 4.15232 4.18835 4.21945 4.28802 4.34085 4.40588 4.56167 4.67179 4.79166 4.82989 4.85928 4.95629 5.01472 5.04022 5.08093 5.08760 5.11344 5.17038 5.21696 5.27605 5.34162 5.37367 5.47928 5.50859 5.60833 5.67040 5.73244 5.76482 5.96864 6.04084 6.22565 6.97129 7.78122 8.74422 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.004859 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.742354 B = 5760.620977 C = 7184.965075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.041 4.041 6 C -0.162 4.162 7 C 0.080 3.920 8 F -0.155 7.155 9 C -0.147 4.147 10 C 0.004 3.996 11 C -0.150 4.150 12 C -0.054 4.054 13 C -0.191 4.191 14 C -0.066 4.066 15 C -0.250 4.250 16 C 0.124 3.876 17 O -0.212 6.212 18 C -0.416 4.416 19 H 0.100 0.900 20 C -0.018 4.018 21 N -0.912 5.912 22 Si 1.013 2.987 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.115 4.115 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.156 0.844 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.270 0.730 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 5.109 -7.630 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.024 4.024 3 C -0.203 4.203 4 C -0.197 4.197 5 C -0.041 4.041 6 C -0.180 4.180 7 C 0.061 3.939 8 F -0.134 7.134 9 C -0.166 4.166 10 C 0.003 3.997 11 C -0.151 4.151 12 C -0.072 4.072 13 C -0.209 4.209 14 C -0.083 4.083 15 C -0.269 4.269 16 C 0.072 3.928 17 O -0.117 6.117 18 C -0.492 4.492 19 H 0.118 0.882 20 C -0.216 4.216 21 N -0.549 5.549 22 Si 0.833 3.167 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.133 4.133 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.173 0.827 37 H 0.111 0.889 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.670 5.480 -7.631 16.587 hybrid contribution 1.667 -0.634 1.096 2.093 sum -12.003 4.846 -6.535 14.500 Atomic orbital electron populations 1.21885 0.91817 1.02707 1.02810 1.19572 0.97022 0.95228 0.90595 1.21991 1.00944 0.94244 1.03099 1.21920 1.00586 1.00526 0.96676 1.19870 0.95211 0.93209 0.95788 1.21290 1.01460 1.02044 0.93205 1.17853 0.94864 0.90908 0.90312 1.91421 1.73242 1.80638 1.68122 1.21049 1.00913 0.93243 1.01420 1.18519 0.95325 0.92061 0.93763 1.18214 0.93091 0.90864 1.12948 1.21165 0.92764 0.97027 0.96255 1.21132 1.00312 0.92631 1.06803 1.21268 0.91092 1.00632 0.95348 1.21272 0.98692 0.95168 1.11797 1.19958 0.85240 0.93628 0.93928 1.83977 1.12828 1.39682 1.75223 1.21767 0.89246 0.91769 1.46467 0.88239 1.26494 0.98858 0.99536 0.96741 1.70207 1.18280 1.19142 1.47248 0.84725 0.76018 0.76675 0.79304 1.18069 1.19903 1.18338 1.21215 1.01542 0.94453 0.96120 0.92527 0.90194 0.92104 0.93051 0.90125 0.91926 0.92555 0.89842 0.93973 0.82666 0.88880 0.83225 0.82672 0.83642 0.86355 0.92114 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.29 71.98 0.60 -1.61 16 2 C -0.02 -0.50 0.85 -52.93 -0.05 -0.55 16 3 C -0.15 -2.61 7.13 71.98 0.51 -2.09 16 4 C -0.14 -2.83 8.29 71.98 0.60 -2.23 16 5 C -0.04 -1.20 4.76 -19.91 -0.09 -1.29 16 6 C -0.16 -5.42 8.95 22.36 0.20 -5.22 16 7 C 0.08 3.37 7.29 22.34 0.16 3.53 16 8 F -0.16 -6.86 17.26 44.97 0.78 -6.08 16 9 C -0.15 -6.90 8.77 22.54 0.20 -6.70 16 10 C 0.00 0.15 5.27 -20.05 -0.11 0.04 16 11 C -0.15 -6.32 5.49 -19.93 -0.11 -6.43 16 12 C -0.05 -1.75 9.51 22.47 0.21 -1.54 16 13 C -0.19 -5.50 10.03 22.27 0.22 -5.28 16 14 C -0.07 -2.15 10.03 22.29 0.22 -1.92 16 15 C -0.25 -10.75 9.16 22.36 0.20 -10.54 16 16 C 0.12 6.13 6.56 22.81 0.15 6.28 16 17 O -0.21 -12.58 8.13 -21.55 -0.18 -12.76 16 18 C -0.42 -24.28 9.49 67.92 0.64 -23.64 16 19 H 0.10 5.33 5.21 -2.91 -0.02 5.31 16 20 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 21 N -0.91 -56.81 13.67 21.61 0.30 -56.52 16 22 Si 1.01 43.62 29.55 68.60 2.03 45.64 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 C -0.12 -3.80 8.17 22.50 0.18 -3.62 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.99 7.38 -2.39 -0.02 0.97 16 30 H 0.05 1.02 7.51 -2.39 -0.02 1.00 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.08 7.51 -2.39 -0.02 1.06 16 33 H 0.06 1.17 7.38 -2.39 -0.02 1.16 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.16 4.33 5.88 -2.91 -0.02 4.31 16 37 H 0.09 5.04 7.71 -2.91 -0.02 5.02 16 38 H 0.15 3.73 8.04 -2.91 -0.02 3.71 16 39 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.12 5.19 5.64 -2.91 -0.02 5.18 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.15 4.04 7.07 -2.91 -0.02 4.02 16 Total: -1.00 -72.93 357.91 8.16 -64.76 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 1.02 Total: 28.31 kcal Atomic # 6 Polarization: -67.57 SS G_CDS: 4.22 Total: -63.35 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.18 Total: -12.76 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.78 Total: -6.08 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.93 8.16 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.405 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds