Wall clock time and date at job start Tue Mar 31 2020 10:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35886 * 116.99956 * 2 1 4 4 C 1.38850 * 119.92973 * 359.97438 * 3 2 1 5 5 C 1.37889 * 120.05795 * 180.02562 * 4 3 2 6 6 C 1.39390 * 119.93831 * 0.02562 * 5 4 3 7 7 C 1.48372 * 120.06414 * 179.97438 * 6 5 4 8 8 C 1.39837 * 119.96359 * 180.02562 * 7 6 5 9 9 C 1.38233 * 120.42108 * 179.97438 * 8 7 6 10 10 C 1.38075 * 120.34425 * 359.97438 * 9 8 7 11 11 F 1.35105 * 120.03637 * 180.02562 * 10 9 8 12 12 C 1.41038 * 119.92237 * 359.97438 * 10 9 8 13 13 C 1.41312 * 120.20498 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00234 * 329.56370 * 13 12 10 15 15 C 1.39921 * 120.00089 * 149.56775 * 13 12 10 16 16 N 1.30853 * 120.00499 * 162.13972 * 15 13 12 17 17 Si 1.86805 * 119.99732 * 342.13783 * 15 13 12 18 18 H 1.48502 * 109.46880 * 95.43647 * 17 15 13 19 19 H 1.48493 * 109.47039 * 215.43728 * 17 15 13 20 20 H 1.48500 * 109.47181 * 335.44010 * 17 15 13 21 21 C 1.38675 * 119.96569 * 359.74090 * 7 6 5 22 22 C 1.39348 * 119.87057 * 359.97438 * 6 5 4 23 23 C 1.37936 * 119.93583 * 0.27975 * 22 6 5 24 24 C 1.50696 * 119.96876 * 179.69955 * 23 22 6 25 25 C 1.53001 * 109.47297 * 300.00189 * 24 23 22 26 26 C 1.52999 * 109.47216 * 60.00430 * 24 23 22 27 27 H 1.08997 * 109.47183 * 300.00222 * 1 2 3 28 28 H 1.09006 * 109.46643 * 60.00098 * 1 2 3 29 29 H 1.09004 * 109.46858 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.97208 * 0.04708 * 4 3 2 31 31 H 1.08005 * 120.02994 * 180.02562 * 5 4 3 32 32 H 1.08005 * 119.79314 * 359.97438 * 8 7 6 33 33 H 1.07996 * 119.83320 * 180.02562 * 9 8 7 34 34 H 0.96994 * 120.00046 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.17611 * 0.02616 * 21 7 6 36 36 H 1.08006 * 120.03847 * 180.02562 * 22 6 5 37 37 H 1.08998 * 109.47201 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.47174 * 59.99609 * 25 24 23 39 39 H 1.08997 * 109.47460 * 180.02562 * 25 24 23 40 40 H 1.08997 * 109.47362 * 300.00032 * 25 24 23 41 41 H 1.08995 * 109.47034 * 59.99648 * 26 24 23 42 42 H 1.08997 * 109.46877 * 179.97438 * 26 24 23 43 43 H 1.09001 * 109.46751 * 299.99200 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2882 2.3743 -0.0005 5 6 1.9115 3.6043 -0.0011 6 6 3.3034 3.6789 -0.0016 7 6 3.9769 5.0009 -0.0028 8 6 5.3734 5.0733 -0.0038 9 6 6.0107 6.3000 -0.0055 10 6 5.2749 7.4683 -0.0065 11 9 5.9043 8.6639 -0.0086 12 6 3.8657 7.4123 -0.0066 13 6 3.1067 8.6043 -0.0071 14 1 3.4969 9.4931 0.4663 15 6 1.8497 8.6330 -0.6210 16 7 1.0039 9.5899 -0.3356 17 14 1.3789 7.3054 -1.8479 18 1 0.6123 6.2395 -1.1540 19 1 0.5417 7.8982 -2.9216 20 1 2.6084 6.7232 -2.4433 21 6 3.2209 6.1635 -0.0087 22 6 4.0611 2.5094 -0.0011 23 6 3.4321 1.2818 -0.0058 24 6 4.2508 0.0166 -0.0121 25 6 5.1323 -0.0143 -1.2623 26 6 5.1345 -0.0253 1.2362 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 0.2099 2.3159 -0.0002 31 1 1.3217 4.5091 -0.0011 32 1 5.9578 4.1650 -0.0034 33 1 7.0898 6.3448 -0.0067 34 1 0.1324 9.6095 -0.7609 35 1 2.1423 6.1096 -0.0121 36 1 5.1397 2.5640 -0.0011 37 1 3.5854 -0.8467 -0.0157 38 1 5.7977 0.8490 -1.2591 39 1 5.7241 -0.9296 -1.2671 40 1 4.5028 0.0155 -2.1516 41 1 4.5065 -0.0032 2.1268 42 1 5.7262 -0.9406 1.2318 43 1 5.8000 0.8380 1.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244129589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:23 Heat of formation + Delta-G solvation = -59.553603 kcal Electronic energy + Delta-G solvation = -25708.064371 eV Core-core repulsion = 22017.839298 eV Total energy + Delta-G solvation = -3690.225074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.42959 -40.30130 -38.27587 -37.04746 -35.26124 -33.79235 -31.31373 -30.69008 -29.81289 -28.27154 -27.11844 -26.67429 -25.39117 -23.45729 -22.44468 -21.65067 -20.22981 -19.37021 -18.05323 -17.56468 -16.58925 -16.28979 -15.74157 -15.54919 -14.96338 -14.70476 -14.42271 -14.36842 -14.20497 -13.76788 -13.50317 -13.45443 -13.26222 -12.88007 -12.54113 -12.45896 -12.23217 -12.15836 -11.96571 -11.77433 -11.64782 -11.62727 -11.24028 -11.16391 -10.92592 -10.87602 -10.57225 -10.46608 -10.33532 -9.98041 -9.73258 -9.27725 -8.68221 -8.37220 -7.88427 -7.08454 -7.01196 -4.61228 1.28307 1.54418 2.42491 2.54830 2.97310 3.10916 3.22264 3.29559 3.85733 3.93900 4.45197 4.68988 4.82974 4.95209 5.05812 5.10588 5.17331 5.24640 5.28354 5.31434 5.37435 5.49857 5.58298 5.62585 5.66662 5.75189 5.84053 5.84538 5.86468 5.98648 6.15508 6.22788 6.25766 6.26294 6.38266 6.52633 6.54273 6.66022 6.85807 6.94170 7.01920 7.20665 7.30191 7.44542 7.51159 7.62493 7.87647 8.21771 8.44114 8.61352 9.94158 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.004529 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.627021 B = 6180.457390 C = 7723.700109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.113 3.887 4 C -0.202 4.202 5 C -0.084 4.084 6 C -0.053 4.053 7 C -0.020 4.020 8 C -0.207 4.207 9 C -0.112 4.112 10 C -0.007 4.007 11 F -0.156 7.156 12 C 0.067 3.933 13 C -0.438 4.438 14 H 0.096 0.904 15 C 0.086 3.914 16 N -0.799 5.799 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.241 1.241 21 C -0.204 4.204 22 C -0.073 4.073 23 C -0.107 4.107 24 C -0.048 4.048 25 C -0.143 4.143 26 C -0.143 4.143 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.288 0.712 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -18.096 -0.580 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.069 3.931 4 C -0.220 4.220 5 C -0.102 4.102 6 C -0.053 4.053 7 C -0.020 4.020 8 C -0.226 4.226 9 C -0.131 4.131 10 C -0.027 4.027 11 F -0.135 7.135 12 C 0.063 3.937 13 C -0.466 4.466 14 H 0.114 0.886 15 C -0.134 4.134 16 N -0.422 5.422 17 Si 0.729 3.271 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.164 1.164 21 C -0.223 4.223 22 C -0.091 4.091 23 C -0.108 4.108 24 C -0.066 4.066 25 C -0.200 4.200 26 C -0.200 4.200 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.039 -18.044 -0.590 18.054 hybrid contribution -0.692 0.094 -0.480 0.847 sum -0.731 -17.951 -1.069 17.998 Atomic orbital electron populations 1.23002 0.78951 1.03419 1.01357 1.86000 1.20838 1.27157 1.89183 1.18788 0.91716 0.83838 0.98793 1.21089 0.99657 0.92164 1.09114 1.21207 0.94325 0.97228 0.97406 1.18922 0.92618 0.92975 1.00829 1.18333 0.92997 0.90518 1.00155 1.20225 0.92702 0.95801 1.13870 1.20526 0.98407 0.91751 1.02416 1.17855 0.90588 0.79683 1.14617 1.91316 1.82287 1.45021 1.94874 1.17618 0.90224 0.93673 0.92171 1.19412 0.99151 0.97548 1.30498 0.88558 1.26131 0.94674 0.96276 0.96320 1.69686 1.06442 1.30983 1.35105 0.86444 0.80291 0.80208 0.80189 1.19245 1.21313 1.16353 1.20926 0.98181 0.91112 1.12099 1.20927 0.99949 0.90082 0.98164 1.19062 0.90049 0.95450 1.06227 1.19915 0.96071 0.95116 0.95515 1.21858 0.99342 1.01632 0.97198 1.21856 0.99322 1.01624 0.97206 0.92795 0.92831 0.88616 0.85739 0.85427 0.87530 0.87298 0.90176 0.87125 0.85022 0.90005 0.92366 0.92684 0.92719 0.92693 0.92696 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.07 9.25 -19.38 -0.18 -4.25 16 3 C 0.11 1.65 6.66 -39.15 -0.26 1.39 16 4 C -0.20 -3.04 9.02 -39.48 -0.36 -3.40 16 5 C -0.08 -1.48 9.41 -39.28 -0.37 -1.85 16 6 C -0.05 -0.98 5.88 -104.88 -0.62 -1.60 16 7 C -0.02 -0.42 5.87 -104.97 -0.62 -1.03 16 8 C -0.21 -4.09 9.43 -38.99 -0.37 -4.45 16 9 C -0.11 -2.33 9.99 -39.64 -0.40 -2.73 16 10 C -0.01 -0.18 7.31 -38.58 -0.28 -0.46 16 11 F -0.16 -3.82 16.77 2.25 0.04 -3.78 16 12 C 0.07 1.70 5.10 -106.80 -0.54 1.15 16 13 C -0.44 -11.92 9.25 -37.78 -0.35 -12.26 16 14 H 0.10 2.79 7.98 -52.48 -0.42 2.37 16 15 C 0.09 2.22 5.41 -17.34 -0.09 2.13 16 16 N -0.80 -20.93 13.93 55.55 0.77 -20.16 16 17 Si 0.90 20.21 24.52 -169.99 -4.17 16.05 16 18 H -0.27 -5.56 6.05 56.52 0.34 -5.22 16 19 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.24 -5.58 6.85 56.52 0.39 -5.19 16 21 C -0.20 -4.77 6.53 -38.55 -0.25 -5.02 16 22 C -0.07 -1.16 8.08 -39.28 -0.32 -1.47 16 23 C -0.11 -1.55 4.79 -104.52 -0.50 -2.05 16 24 C -0.05 -0.56 3.05 -91.77 -0.28 -0.84 16 25 C -0.14 -1.53 9.01 37.16 0.33 -1.19 16 26 C -0.14 -1.51 9.01 37.16 0.33 -1.18 16 27 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 28 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.12 1.57 6.28 -52.49 -0.33 1.24 16 31 H 0.13 2.34 5.51 -52.48 -0.29 2.05 16 32 H 0.11 1.77 6.17 -52.48 -0.32 1.45 16 33 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 35 H 0.11 2.54 2.94 -52.49 -0.15 2.39 16 36 H 0.13 1.88 5.21 -52.48 -0.27 1.61 16 37 H 0.08 0.98 6.98 -51.93 -0.36 0.61 16 38 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -28.02 346.29 -7.72 -35.74 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.46 Total: 4.81 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -3.94 Total: -33.62 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.77 Total: -20.16 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.18 Total: -4.25 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.17 Total: 16.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.02 -7.72 -35.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244129589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.819 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds