Wall clock time and date at job start Tue Mar 31 2020 10:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.35815 * 117.00122 * 180.02562 * 3 2 1 5 5 C 1.38983 * 119.90570 * 0.02562 * 4 3 2 6 6 C 1.37745 * 120.09781 * 179.70331 * 5 4 3 7 7 C 1.39765 * 119.89922 * 0.27339 * 6 5 4 8 8 C 1.47763 * 120.09044 * 179.97438 * 7 6 5 9 9 C 1.39216 * 120.25791 * 129.71894 * 8 7 6 10 10 C 1.37959 * 120.12964 * 179.76776 * 9 8 7 11 11 C 1.39221 * 120.65793 * 0.51464 * 10 9 8 12 12 F 1.35099 * 119.74107 * 179.76721 * 11 10 9 13 13 C 1.37603 * 120.51361 * 359.73984 * 11 10 9 14 14 C 1.40728 * 119.85140 * 0.02562 * 13 11 10 15 15 C 1.40844 * 120.32332 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00485 * 154.13663 * 15 14 13 17 17 C 1.40039 * 119.99780 * 334.13483 * 15 14 13 18 18 N 1.30791 * 120.00136 * 344.43228 * 17 15 14 19 19 Si 1.86798 * 119.99732 * 164.42570 * 17 15 14 20 20 H 1.48505 * 109.47105 * 94.47459 * 19 17 15 21 21 H 1.48510 * 109.47071 * 214.46894 * 19 17 15 22 22 H 1.48493 * 109.47767 * 334.46955 * 19 17 15 23 23 C 1.39721 * 119.81925 * 359.97438 * 7 6 5 24 24 C 1.37791 * 119.90455 * 0.02562 * 23 7 6 25 25 C 1.50702 * 119.95335 * 180.02562 * 24 23 7 26 26 C 1.53000 * 109.46934 * 265.00057 * 25 24 23 27 27 H 1.08999 * 109.46595 * 300.00322 * 1 2 3 28 28 H 1.08999 * 109.46968 * 59.99481 * 1 2 3 29 29 H 1.08999 * 109.47821 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46927 * 239.99487 * 2 1 3 31 31 H 1.08999 * 109.46968 * 120.00519 * 2 1 3 32 32 H 1.08001 * 119.95552 * 359.97325 * 5 4 3 33 33 H 1.07999 * 120.04843 * 180.25117 * 6 5 4 34 34 H 1.08004 * 119.93313 * 0.02826 * 9 8 7 35 35 H 1.07998 * 119.67065 * 180.25771 * 10 9 8 36 36 H 1.08000 * 120.07410 * 180.02562 * 13 11 10 37 37 H 0.97001 * 120.00588 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.05437 * 179.97438 * 23 7 6 39 39 H 1.08997 * 109.47014 * 24.99795 * 25 24 23 40 40 H 1.08996 * 109.46919 * 144.99559 * 25 24 23 41 41 H 1.09001 * 109.47343 * 59.99705 * 26 25 24 42 42 H 1.09001 * 109.47223 * 180.02562 * 26 25 24 43 43 H 1.08996 * 109.46771 * 300.00180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3528 1.5251 -0.0005 5 6 4.1976 0.4214 -0.0016 6 6 5.5638 0.5973 -0.0083 7 6 6.1001 1.8879 -0.0083 8 6 7.5650 2.0814 -0.0149 9 6 8.1554 2.9370 -0.9410 10 6 9.5229 3.1194 -0.9417 11 6 10.3294 2.4460 -0.0283 12 9 11.6669 2.6348 -0.0485 13 6 9.7746 1.5901 0.8954 14 6 8.3816 1.3918 0.9185 15 6 7.8033 0.5176 1.8593 16 1 6.7790 0.6598 2.1703 17 6 8.5567 -0.5362 2.3915 18 7 9.6711 -0.9011 1.8121 19 14 7.9701 -1.4203 3.9288 20 1 7.1941 -2.6256 3.5410 21 1 9.1431 -1.8278 4.7435 22 1 7.1071 -0.5107 4.7243 23 6 5.2473 2.9947 -0.0020 24 6 3.8819 2.8098 0.0047 25 6 2.9611 4.0028 0.0109 26 6 2.5573 4.3278 1.4504 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7824 -0.5755 -0.0016 33 1 6.2195 -0.2609 -0.0132 34 1 7.5412 3.4621 -1.6576 35 1 9.9727 3.7880 -1.6607 36 1 10.4069 1.0717 1.6010 37 1 10.1931 -1.6308 2.1808 38 1 5.6577 3.9937 -0.0015 39 1 3.4742 4.8600 -0.4249 40 1 2.0698 3.7768 -0.5743 41 1 3.4487 4.5537 2.0357 42 1 1.8909 5.1904 1.4550 43 1 2.0443 3.4705 1.8862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245872795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:04 Heat of formation + Delta-G solvation = -67.144153 kcal Electronic energy + Delta-G solvation = -25607.665871 eV Core-core repulsion = 21917.111647 eV Total energy + Delta-G solvation = -3690.554225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.68503 -39.87245 -38.00514 -36.59116 -33.85023 -33.80744 -31.74938 -30.51490 -29.95586 -28.97463 -27.15501 -25.48591 -23.92149 -23.37877 -21.88889 -21.29900 -20.50977 -19.45899 -17.76643 -17.56601 -16.00283 -15.93796 -15.67475 -15.44190 -14.94674 -14.59100 -14.34565 -14.02784 -13.90824 -13.59207 -13.18094 -13.05815 -12.98359 -12.79212 -12.61085 -12.35756 -12.19658 -12.06593 -11.70124 -11.57842 -11.44528 -11.29794 -11.18597 -10.98151 -10.84366 -10.61172 -10.53175 -10.33646 -10.17612 -9.89754 -9.64792 -9.34307 -8.28291 -7.77914 -7.65734 -7.08509 -6.82157 -4.55599 1.85527 1.96510 2.60596 2.80255 2.98059 3.01686 3.08385 3.47389 3.79318 4.32525 4.44976 4.91217 4.97932 5.13153 5.22898 5.24030 5.41693 5.45628 5.52548 5.62835 5.66368 5.69411 5.73573 5.81346 5.92045 6.01363 6.04553 6.08115 6.19176 6.24788 6.31981 6.33242 6.48447 6.67376 6.83324 6.86978 6.95850 6.99040 7.07743 7.30179 7.40289 7.43565 7.60600 7.69825 7.82691 7.91131 8.08890 8.41034 8.65641 8.71172 9.97111 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.004632 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.327654 B = 6043.994205 C = 7630.501903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.104 3.896 5 C -0.209 4.209 6 C -0.062 4.062 7 C -0.014 4.014 8 C -0.185 4.185 9 C -0.048 4.048 10 C -0.277 4.277 11 C 0.106 3.894 12 F -0.168 7.168 13 C -0.197 4.197 14 C 0.146 3.854 15 C -0.442 4.442 16 H 0.088 0.912 17 C 0.075 3.925 18 N -0.782 5.782 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.090 4.090 24 C -0.119 4.119 25 C -0.069 4.069 26 C -0.143 4.143 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.285 0.715 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.708 1.339 -1.377 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.059 3.941 5 C -0.227 4.227 6 C -0.080 4.080 7 C -0.014 4.014 8 C -0.186 4.186 9 C -0.066 4.066 10 C -0.297 4.297 11 C 0.087 3.913 12 F -0.147 7.147 13 C -0.217 4.217 14 C 0.143 3.857 15 C -0.471 4.471 16 H 0.106 0.894 17 C -0.145 4.145 18 N -0.406 5.406 19 Si 0.730 3.270 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.108 4.108 24 C -0.119 4.119 25 C -0.106 4.106 26 C -0.200 4.200 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.622 1.297 -1.356 12.761 hybrid contribution 0.327 -0.851 0.650 1.119 sum -12.296 0.446 -0.707 12.324 Atomic orbital electron populations 1.21750 0.93340 1.02407 1.03177 1.22658 0.95226 0.82927 1.01236 1.85963 1.19752 1.28155 1.89413 1.18729 0.81515 0.93599 1.00210 1.21085 0.94537 0.97136 1.09978 1.21233 0.93314 0.97832 0.95624 1.18649 0.92692 0.91917 0.98120 1.18589 0.90777 1.07765 1.01487 1.20392 0.93185 0.96244 0.96788 1.20189 0.93958 1.09937 1.05660 1.17780 0.75599 0.99191 0.98694 1.91334 1.32467 1.94544 1.96319 1.21262 0.96650 1.02021 1.01783 1.17270 0.90035 0.89048 0.89365 1.19603 0.99649 1.08590 1.19228 0.89384 1.26006 0.94047 0.96989 0.97427 1.69788 1.12273 1.22855 1.35637 0.86305 0.79540 0.79834 0.81313 1.19306 1.19828 1.18133 1.21008 0.91047 0.98642 1.00135 1.18979 0.93822 0.91758 1.07390 1.20263 0.98045 0.94960 0.97379 1.21700 1.01024 1.00793 0.96477 0.91758 0.91782 0.90796 0.92431 0.92354 0.86445 0.85067 0.88185 0.88161 0.85131 0.90402 0.86086 0.91750 0.91401 0.92718 0.93184 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.06 0.63 5.46 37.16 0.20 0.84 16 3 O -0.32 -4.71 9.25 -19.16 -0.18 -4.89 16 4 C 0.10 1.74 6.67 -39.05 -0.26 1.48 16 5 C -0.21 -3.59 9.02 -39.49 -0.36 -3.95 16 6 C -0.06 -1.22 7.97 -39.19 -0.31 -1.54 16 7 C -0.01 -0.28 4.92 -104.88 -0.52 -0.79 16 8 C -0.18 -4.22 5.52 -104.24 -0.58 -4.79 16 9 C -0.05 -1.03 9.50 -39.32 -0.37 -1.40 16 10 C -0.28 -6.18 10.01 -39.32 -0.39 -6.58 16 11 C 0.11 2.58 7.28 -39.45 -0.29 2.29 16 12 F -0.17 -3.94 17.26 2.25 0.04 -3.90 16 13 C -0.20 -5.03 8.64 -38.87 -0.34 -5.37 16 14 C 0.15 3.65 5.56 -106.57 -0.59 3.05 16 15 C -0.44 -10.82 7.13 -37.92 -0.27 -11.09 16 16 H 0.09 2.12 6.58 -52.49 -0.35 1.78 16 17 C 0.08 1.76 5.18 -17.32 -0.09 1.67 16 18 N -0.78 -19.09 10.91 55.55 0.61 -18.49 16 19 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.09 -1.64 9.14 -39.19 -0.36 -2.00 16 24 C -0.12 -1.99 5.14 -104.52 -0.54 -2.52 16 25 C -0.07 -0.95 5.78 -27.88 -0.16 -1.12 16 26 C -0.14 -1.83 9.89 37.16 0.37 -1.46 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 31 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 32 H 0.12 1.75 6.28 -52.49 -0.33 1.42 16 33 H 0.13 2.74 7.30 -52.49 -0.38 2.36 16 34 H 0.10 1.89 8.04 -52.48 -0.42 1.46 16 35 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.13 3.46 6.17 -52.49 -0.32 3.14 16 37 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 38 H 0.12 2.06 8.05 -52.49 -0.42 1.64 16 39 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -26.23 360.05 -9.53 -35.76 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.93 Total: 7.56 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: -4.47 Total: -34.20 kcal Atomic # 7 Polarization: -19.09 SS G_CDS: 0.61 Total: -18.49 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.18 Total: -4.89 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.23 -9.53 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245872795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.382 kcal (2) G-P(sol) polarization free energy of solvation -26.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds