Wall clock time and date at job start Tue Mar 31 2020 10:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.35815 * 117.00122 * 180.02562 * 3 2 1 5 5 C 1.38983 * 119.90570 * 0.02562 * 4 3 2 6 6 C 1.37745 * 120.09781 * 179.70331 * 5 4 3 7 7 C 1.39765 * 119.89922 * 0.27339 * 6 5 4 8 8 C 1.47763 * 120.09044 * 179.97438 * 7 6 5 9 9 C 1.39216 * 120.25791 * 129.71894 * 8 7 6 10 10 C 1.37959 * 120.12964 * 179.76776 * 9 8 7 11 11 C 1.39221 * 120.65793 * 0.51464 * 10 9 8 12 12 F 1.35099 * 119.74107 * 179.76721 * 11 10 9 13 13 C 1.37603 * 120.51361 * 359.73984 * 11 10 9 14 14 C 1.40728 * 119.85140 * 0.02562 * 13 11 10 15 15 C 1.40844 * 120.32332 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00485 * 154.13663 * 15 14 13 17 17 C 1.40039 * 119.99780 * 334.13483 * 15 14 13 18 18 N 1.30791 * 120.00136 * 344.43228 * 17 15 14 19 19 Si 1.86798 * 119.99732 * 164.42570 * 17 15 14 20 20 H 1.48505 * 109.47105 * 94.47459 * 19 17 15 21 21 H 1.48510 * 109.47071 * 214.46894 * 19 17 15 22 22 H 1.48493 * 109.47767 * 334.46955 * 19 17 15 23 23 C 1.39721 * 119.81925 * 359.97438 * 7 6 5 24 24 C 1.37791 * 119.90455 * 0.02562 * 23 7 6 25 25 C 1.50702 * 119.95335 * 180.02562 * 24 23 7 26 26 C 1.53000 * 109.46934 * 265.00057 * 25 24 23 27 27 H 1.08999 * 109.46595 * 300.00322 * 1 2 3 28 28 H 1.08999 * 109.46968 * 59.99481 * 1 2 3 29 29 H 1.08999 * 109.47821 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46927 * 239.99487 * 2 1 3 31 31 H 1.08999 * 109.46968 * 120.00519 * 2 1 3 32 32 H 1.08001 * 119.95552 * 359.97325 * 5 4 3 33 33 H 1.07999 * 120.04843 * 180.25117 * 6 5 4 34 34 H 1.08004 * 119.93313 * 0.02826 * 9 8 7 35 35 H 1.07998 * 119.67065 * 180.25771 * 10 9 8 36 36 H 1.08000 * 120.07410 * 180.02562 * 13 11 10 37 37 H 0.97001 * 120.00588 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.05437 * 179.97438 * 23 7 6 39 39 H 1.08997 * 109.47014 * 24.99795 * 25 24 23 40 40 H 1.08996 * 109.46919 * 144.99559 * 25 24 23 41 41 H 1.09001 * 109.47343 * 59.99705 * 26 25 24 42 42 H 1.09001 * 109.47223 * 180.02562 * 26 25 24 43 43 H 1.08996 * 109.46771 * 300.00180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3528 1.5251 -0.0005 5 6 4.1976 0.4214 -0.0016 6 6 5.5638 0.5973 -0.0083 7 6 6.1001 1.8879 -0.0083 8 6 7.5650 2.0814 -0.0149 9 6 8.1554 2.9370 -0.9410 10 6 9.5229 3.1194 -0.9417 11 6 10.3294 2.4460 -0.0283 12 9 11.6669 2.6348 -0.0485 13 6 9.7746 1.5901 0.8954 14 6 8.3816 1.3918 0.9185 15 6 7.8033 0.5176 1.8593 16 1 6.7790 0.6598 2.1703 17 6 8.5567 -0.5362 2.3915 18 7 9.6711 -0.9011 1.8121 19 14 7.9701 -1.4203 3.9288 20 1 7.1941 -2.6256 3.5410 21 1 9.1431 -1.8278 4.7435 22 1 7.1071 -0.5107 4.7243 23 6 5.2473 2.9947 -0.0020 24 6 3.8819 2.8098 0.0047 25 6 2.9611 4.0028 0.0109 26 6 2.5573 4.3278 1.4504 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7824 -0.5755 -0.0016 33 1 6.2195 -0.2609 -0.0132 34 1 7.5412 3.4621 -1.6576 35 1 9.9727 3.7880 -1.6607 36 1 10.4069 1.0717 1.6010 37 1 10.1931 -1.6308 2.1808 38 1 5.6577 3.9937 -0.0015 39 1 3.4742 4.8600 -0.4249 40 1 2.0698 3.7768 -0.5743 41 1 3.4487 4.5537 2.0357 42 1 1.8909 5.1904 1.4550 43 1 2.0443 3.4705 1.8862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245872795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:03 Heat of formation + Delta-G solvation = -76.379111 kcal Electronic energy + Delta-G solvation = -25608.066329 eV Core-core repulsion = 21917.111647 eV Total energy + Delta-G solvation = -3690.954682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.57060 -41.17580 -39.58355 -38.01224 -35.64034 -35.05931 -32.79011 -31.94387 -31.69349 -30.34195 -28.70453 -27.26220 -25.05011 -24.52885 -23.39392 -23.01238 -21.82986 -20.97986 -19.50294 -18.88802 -17.80595 -17.07872 -17.00897 -16.90904 -16.63759 -16.34404 -16.22950 -15.35113 -15.11179 -14.76966 -14.73971 -14.46282 -14.30413 -14.17551 -13.90238 -13.81036 -13.42531 -13.32473 -13.20338 -12.90086 -12.84688 -12.69537 -12.49483 -12.33499 -12.28680 -12.14234 -11.89009 -11.61539 -11.59124 -11.37999 -11.30254 -11.10276 -9.70307 -9.49523 -9.37656 -8.79337 -8.47220 -6.40563 0.31216 0.55820 0.87145 1.06436 1.35269 1.44201 1.50136 2.14821 2.37918 2.60471 2.93653 3.57417 3.79261 3.90980 3.98202 4.10223 4.10795 4.25587 4.38413 4.39540 4.44956 4.51554 4.55624 4.61530 4.64265 4.75714 4.81573 4.99015 4.99546 5.02141 5.06412 5.10648 5.13825 5.24491 5.25456 5.31147 5.43312 5.51356 5.60609 5.63736 5.76202 5.82254 5.87750 6.03860 6.08646 6.27848 6.54941 6.61917 6.83020 6.87855 8.22844 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.004632 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.327654 B = 6043.994205 C = 7630.501903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.320 6.320 4 C 0.111 3.889 5 C -0.208 4.208 6 C -0.075 4.075 7 C -0.042 4.042 8 C -0.183 4.183 9 C -0.049 4.049 10 C -0.274 4.274 11 C 0.091 3.909 12 F -0.168 7.168 13 C -0.225 4.225 14 C 0.120 3.880 15 C -0.460 4.460 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.815 5.815 19 Si 0.972 3.028 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.088 4.088 24 C -0.121 4.121 25 C -0.067 4.067 26 C -0.139 4.139 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.291 0.709 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 1.878 -1.618 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.235 6.235 4 C 0.065 3.935 5 C -0.227 4.227 6 C -0.093 4.093 7 C -0.043 4.043 8 C -0.184 4.184 9 C -0.067 4.067 10 C -0.294 4.294 11 C 0.071 3.929 12 F -0.147 7.147 13 C -0.245 4.245 14 C 0.117 3.883 15 C -0.489 4.489 16 H 0.102 0.898 17 C -0.178 4.178 18 N -0.440 5.440 19 Si 0.792 3.208 20 H -0.183 1.183 21 H -0.192 1.192 22 H -0.182 1.182 23 C -0.106 4.106 24 C -0.121 4.121 25 C -0.104 4.104 26 C -0.196 4.196 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.150 0.850 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.520 1.838 -1.610 15.711 hybrid contribution 1.084 -0.992 0.637 1.602 sum -14.436 0.846 -0.972 14.493 Atomic orbital electron populations 1.21765 0.91014 1.03998 1.03294 1.23004 0.97089 0.81408 1.01672 1.85983 1.18271 1.30359 1.88859 1.18855 0.82493 0.93462 0.98643 1.21235 0.93519 0.98614 1.09334 1.21079 0.94225 0.96934 0.97108 1.18639 0.91750 0.93071 1.00800 1.18939 0.92198 1.06722 1.00575 1.20740 0.93236 0.95911 0.96821 1.20501 0.94220 1.09500 1.05205 1.17993 0.75886 0.99686 0.99288 1.91320 1.32457 1.94562 1.96368 1.21197 0.97092 1.03475 1.02727 1.17594 0.90197 0.90093 0.90437 1.19684 0.99692 1.09338 1.20142 0.89775 1.26764 0.93930 0.97341 0.99796 1.69847 1.13437 1.23661 1.37069 0.85328 0.79144 0.78742 0.77545 1.18291 1.19153 1.18247 1.21092 0.91542 0.98337 0.99658 1.19324 0.93724 0.93067 1.06011 1.20328 0.97735 0.94127 0.98233 1.21668 1.01049 1.01424 0.95493 0.91760 0.91529 0.88488 0.91763 0.92147 0.84380 0.87314 0.85025 0.85587 0.87150 0.89836 0.84992 0.90280 0.90685 0.93563 0.90741 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.04 0.88 5.46 71.98 0.39 1.27 16 3 O -0.32 -8.68 9.25 -91.48 -0.85 -9.53 16 4 C 0.11 3.50 6.67 22.62 0.15 3.65 16 5 C -0.21 -6.99 9.02 22.33 0.20 -6.79 16 6 C -0.08 -3.01 7.97 22.52 0.18 -2.83 16 7 C -0.04 -1.75 4.92 -20.03 -0.10 -1.84 16 8 C -0.18 -8.48 5.52 -19.61 -0.11 -8.59 16 9 C -0.05 -2.08 9.50 22.44 0.21 -1.86 16 10 C -0.27 -12.09 10.01 22.44 0.22 -11.86 16 11 C 0.09 4.49 7.28 22.36 0.16 4.66 16 12 F -0.17 -8.08 17.26 44.97 0.78 -7.30 16 13 C -0.22 -12.02 8.64 22.73 0.20 -11.82 16 14 C 0.12 6.22 5.56 -21.12 -0.12 6.11 16 15 C -0.46 -23.41 7.13 23.34 0.17 -23.24 16 16 H 0.08 4.22 6.58 -2.91 -0.02 4.20 16 17 C 0.04 1.86 5.18 85.28 0.44 2.30 16 18 N -0.82 -41.54 10.91 21.84 0.24 -41.30 16 19 Si 0.97 37.04 29.59 68.60 2.03 39.07 16 20 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 23 C -0.09 -3.11 9.14 22.52 0.21 -2.90 16 24 C -0.12 -3.79 5.14 -19.80 -0.10 -3.89 16 25 C -0.07 -1.65 5.78 29.85 0.17 -1.48 16 26 C -0.14 -3.19 9.89 71.98 0.71 -2.48 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.24 7.65 -2.38 -0.02 1.22 16 31 H 0.06 1.22 7.65 -2.39 -0.02 1.20 16 32 H 0.14 3.92 6.28 -2.91 -0.02 3.90 16 33 H 0.11 4.76 7.30 -2.91 -0.02 4.74 16 34 H 0.13 4.67 8.04 -2.91 -0.02 4.65 16 35 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.11 6.23 6.17 -2.91 -0.02 6.22 16 37 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 38 H 0.13 4.26 8.05 -2.91 -0.02 4.23 16 39 H 0.08 1.73 8.05 -2.39 -0.02 1.71 16 40 H 0.07 1.77 7.67 -2.39 -0.02 1.75 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -58.18 360.05 6.95 -51.23 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 1.01 Total: 30.77 kcal Atomic # 6 Polarization: -66.68 SS G_CDS: 3.73 Total: -62.94 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.24 Total: -41.30 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.85 Total: -9.53 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.78 Total: -7.30 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -58.18 6.95 -51.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245872795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.147 kcal (2) G-P(sol) polarization free energy of solvation -58.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds