Wall clock time and date at job start Tue Mar 31 2020 10:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35893 * 127.00823 * 2 1 4 4 N 1.40485 * 126.79830 * 0.04893 * 3 2 1 5 5 C 1.34778 * 119.99762 * 180.02562 * 4 3 2 6 6 O 1.21294 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99468 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.47036 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47044 * 54.99910 * 8 7 5 10 10 C 1.50703 * 109.47022 * 295.00332 * 8 7 5 11 11 H 1.08005 * 119.99951 * 334.72061 * 10 8 7 12 12 C 1.37870 * 120.00122 * 154.72047 * 10 8 7 13 13 N 1.31515 * 120.00595 * 184.85369 * 12 10 8 14 14 Si 1.86804 * 119.99901 * 4.85542 * 12 10 8 15 15 H 1.48496 * 109.47301 * 84.63514 * 14 12 10 16 16 H 1.48498 * 109.47073 * 204.63613 * 14 12 10 17 17 H 1.48498 * 109.47193 * 324.63386 * 14 12 10 18 18 C 1.50696 * 109.47072 * 175.00200 * 8 7 5 19 19 C 1.38236 * 120.00113 * 55.28028 * 18 8 7 20 20 C 1.38233 * 119.99752 * 179.78683 * 19 18 8 21 21 C 1.38230 * 120.00163 * 0.43679 * 20 19 18 22 22 C 1.38228 * 120.00074 * 359.81484 * 21 20 19 23 23 C 1.38236 * 119.99661 * 235.54809 * 18 8 7 24 24 N 1.34043 * 106.40981 * 180.02562 * 3 2 1 25 25 N 1.28598 * 109.03907 * 359.72653 * 24 3 2 26 26 N 1.28697 * 110.37284 * 0.45432 * 25 24 3 27 27 C 1.46500 * 125.90065 * 179.81739 * 26 25 24 28 28 H 1.08998 * 109.47421 * 269.98850 * 1 2 3 29 29 H 1.09005 * 109.47161 * 29.98508 * 1 2 3 30 30 H 1.09001 * 109.47483 * 149.98457 * 1 2 3 31 31 H 0.96998 * 119.99553 * 0.02562 * 4 3 2 32 32 H 1.08993 * 109.47318 * 300.00261 * 7 5 4 33 33 H 1.08999 * 109.47132 * 60.00541 * 7 5 4 34 34 H 0.96994 * 120.00513 * 180.02562 * 13 12 10 35 35 H 1.07998 * 119.99695 * 359.97438 * 19 18 8 36 36 H 1.08005 * 119.99778 * 180.27404 * 20 19 18 37 37 H 1.08003 * 120.00182 * 179.83552 * 21 20 19 38 38 H 1.08007 * 120.00242 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00094 * 359.97438 * 23 18 8 40 40 H 1.09002 * 109.47156 * 269.69035 * 27 26 25 41 41 H 1.08999 * 109.47441 * 29.69140 * 27 26 25 42 42 H 1.09002 * 109.47491 * 149.68606 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.0852 0.0000 4 7 1.9331 2.4343 0.0010 5 6 2.8662 3.4069 0.0003 6 8 4.0440 3.1175 -0.0016 7 6 2.4458 4.8541 0.0007 8 6 3.6888 5.7463 -0.0008 9 1 4.3267 5.4792 -0.8434 10 6 4.4487 5.5513 1.2860 11 1 3.9320 5.2138 2.1724 12 6 5.8033 5.8038 1.3317 13 7 6.4843 5.5432 2.4262 14 14 6.6715 6.5160 -0.1611 15 1 6.5324 7.9944 -0.1561 16 1 8.1110 6.1542 -0.1158 17 1 6.0615 5.9656 -1.3980 18 6 3.2715 7.1890 -0.1241 19 6 2.3770 7.7296 0.7806 20 6 1.9976 9.0542 0.6700 21 6 2.5057 9.8358 -0.3506 22 6 3.3962 9.2939 -1.2584 23 6 3.7790 7.9704 -1.1454 24 7 3.5797 0.6136 -0.0006 25 7 3.5447 -0.6719 0.0049 26 7 2.3265 -1.0870 -0.0004 27 6 1.8961 -2.4873 -0.0006 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 0.9912 2.6657 0.0021 32 1 1.8503 5.0598 -0.8887 33 1 1.8518 5.0597 0.8913 34 1 7.4372 5.7212 2.4585 35 1 1.9769 7.1178 1.5756 36 1 1.3021 9.4778 1.3795 37 1 2.2073 10.8701 -0.4385 38 1 3.7929 9.9045 -2.0561 39 1 4.4748 7.5470 -1.8545 40 1 1.7890 -2.8344 -1.0283 41 1 2.6401 -3.0962 0.5129 42 1 0.9388 -2.5733 0.5136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361618256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:27 Heat of formation + Delta-G solvation = 99.991076 kcal Electronic energy + Delta-G solvation = -25636.544334 eV Core-core repulsion = 22005.450350 eV Total energy + Delta-G solvation = -3631.093984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.05771 -39.25350 -38.37918 -35.13048 -34.33811 -33.97005 -31.83013 -31.51432 -30.23517 -29.08874 -27.86500 -27.15914 -25.89748 -23.08510 -22.22048 -21.79973 -21.14817 -20.02991 -19.04797 -17.47284 -16.96364 -16.72560 -16.61137 -16.08446 -15.51345 -14.65197 -14.55926 -14.14221 -14.00281 -13.90460 -13.57223 -13.44781 -13.17439 -13.08377 -12.78721 -12.73624 -12.55372 -12.33400 -11.96911 -11.87922 -11.61104 -11.21615 -10.67854 -10.62379 -10.57457 -10.52547 -10.33959 -9.85725 -9.60102 -9.54531 -9.15000 -8.96934 -8.41512 -8.20383 -7.96524 -7.79073 -5.92729 -3.89491 1.58572 2.08384 2.14376 2.29642 2.69902 3.32942 3.46631 3.50028 3.51711 3.66193 4.34037 4.46283 4.52393 4.60104 4.68301 4.75703 5.00903 5.10203 5.21705 5.35952 5.40120 5.51690 5.54063 5.57599 5.68079 5.79725 5.82976 5.92081 5.97951 6.05017 6.21740 6.32100 6.55476 6.63715 6.69495 6.81728 6.89529 7.05828 7.14034 7.25336 7.60335 7.71981 7.77422 7.83805 8.56914 8.73635 8.97582 9.06132 9.70087 11.20411 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.003802 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.685365 B = 7362.508800 C = 8438.666668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.079 4.079 3 C 0.237 3.763 4 N -0.653 5.653 5 C 0.501 3.499 6 O -0.441 6.441 7 C -0.108 4.108 8 C 0.048 3.952 9 H 0.056 0.944 10 C -0.485 4.485 11 H 0.072 0.928 12 C 0.085 3.915 13 N -0.895 5.895 14 Si 0.868 3.132 15 H -0.273 1.273 16 H -0.292 1.292 17 H -0.262 1.262 18 C -0.037 4.037 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.141 4.141 24 N -0.238 5.238 25 N -0.077 5.077 26 N -0.293 5.293 27 C 0.087 3.913 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.410 0.590 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.262 0.738 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.069 -8.691 -6.671 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.212 4.212 3 C 0.006 3.994 4 N -0.306 5.306 5 C 0.286 3.714 6 O -0.305 6.305 7 C -0.149 4.149 8 C 0.028 3.972 9 H 0.074 0.926 10 C -0.522 4.522 11 H 0.090 0.910 12 C -0.118 4.118 13 N -0.532 5.532 14 Si 0.696 3.304 15 H -0.198 1.198 16 H -0.219 1.219 17 H -0.187 1.187 18 C -0.038 4.038 19 C -0.126 4.126 20 C -0.142 4.142 21 C -0.169 4.169 22 C -0.140 4.140 23 C -0.160 4.160 24 N -0.109 5.109 25 N -0.057 5.057 26 N -0.091 5.091 27 C -0.055 4.055 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.435 -9.226 -6.575 19.147 hybrid contribution -0.908 0.678 -0.563 1.265 sum -16.343 -8.548 -7.138 19.777 Atomic orbital electron populations 1.20155 0.85964 1.03625 1.03036 1.21272 0.95432 0.86187 1.18359 1.18620 0.90074 0.86273 1.04445 1.43365 1.10690 1.00557 1.76013 1.21159 0.86091 0.87363 0.76757 1.90883 1.16410 1.82292 1.40959 1.21599 1.00910 0.90077 1.02298 1.18283 0.92607 0.85782 1.00495 0.92617 1.20588 0.92836 1.44371 0.94410 0.91000 1.24860 0.97228 0.94345 0.95372 1.69877 1.08052 1.47693 1.27624 0.87049 0.78862 0.79726 0.84728 1.19849 1.21898 1.18725 1.20755 0.92298 0.99020 0.91727 1.20930 0.98229 0.94717 0.98686 1.21041 1.00558 0.94551 0.98096 1.20851 1.00037 0.99082 0.96935 1.20964 0.98445 0.95324 0.99259 1.21094 1.01298 0.94418 0.99154 1.75572 1.18258 0.99273 1.17762 1.78386 1.01164 1.06710 1.19397 1.47001 1.05083 1.07942 1.49091 1.22148 1.02406 0.76393 1.04544 0.90528 0.89978 0.91113 0.75395 0.90837 0.89382 0.92796 0.86312 0.87141 0.87373 0.87321 0.87214 0.89438 0.88129 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 9.84 36.00 0.35 -0.11 16 2 C -0.08 -0.98 7.04 -81.53 -0.57 -1.55 16 3 C 0.24 4.08 7.76 -153.31 -1.19 2.89 16 4 N -0.65 -10.33 5.46 -11.52 -0.06 -10.39 16 5 C 0.50 10.25 7.55 -10.98 -0.08 10.16 16 6 O -0.44 -11.68 13.76 5.55 0.08 -11.60 16 7 C -0.11 -1.99 4.84 -27.88 -0.13 -2.12 16 8 C 0.05 1.10 1.24 -92.92 -0.12 0.99 16 9 H 0.06 1.41 5.26 -51.93 -0.27 1.13 16 10 C -0.49 -13.65 7.19 -34.44 -0.25 -13.90 16 11 H 0.07 2.19 8.05 -52.48 -0.42 1.76 16 12 C 0.08 2.56 5.47 -17.82 -0.10 2.46 16 13 N -0.90 -28.84 13.96 55.43 0.77 -28.07 16 14 Si 0.87 23.21 24.76 -169.99 -4.21 19.00 16 15 H -0.27 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 17 H -0.26 -6.73 5.95 56.52 0.34 -6.40 16 18 C -0.04 -0.79 4.30 -104.63 -0.45 -1.23 16 19 C -0.11 -2.04 8.94 -39.58 -0.35 -2.40 16 20 C -0.12 -2.08 10.05 -39.59 -0.40 -2.48 16 21 C -0.15 -2.47 10.05 -39.59 -0.40 -2.86 16 22 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 23 C -0.14 -2.86 8.16 -39.58 -0.32 -3.18 16 24 N -0.24 -5.09 10.72 31.09 0.33 -4.75 16 25 N -0.08 -1.37 13.15 60.35 0.79 -0.58 16 26 N -0.29 -3.72 3.76 -63.45 -0.24 -3.96 16 27 C 0.09 0.53 11.09 59.85 0.66 1.20 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.45 7.76 -51.93 -0.40 0.05 16 30 H 0.07 0.32 7.85 -51.93 -0.41 -0.09 16 31 H 0.41 4.37 8.29 -40.82 -0.34 4.04 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.45 7.33 -51.93 -0.38 1.07 16 34 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 35 H 0.12 2.14 7.37 -52.49 -0.39 1.75 16 36 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.11 2.22 6.76 -52.49 -0.35 1.87 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.31 7.77 -51.93 -0.40 -0.09 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -40.54 350.79 -6.52 -47.06 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.53 Total: 2.68 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -3.74 Total: -14.68 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 1.60 Total: -47.75 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.21 Total: 19.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -40.54 -6.52 -47.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361618256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.048 kcal (2) G-P(sol) polarization free energy of solvation -40.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds