Wall clock time and date at job start Tue Mar 31 2020 10:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35893 * 127.00823 * 2 1 4 4 N 1.40485 * 126.79830 * 0.04893 * 3 2 1 5 5 C 1.34778 * 119.99762 * 180.02562 * 4 3 2 6 6 O 1.21294 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99468 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.47036 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47044 * 54.99910 * 8 7 5 10 10 C 1.50703 * 109.47022 * 295.00332 * 8 7 5 11 11 H 1.08005 * 119.99951 * 334.72061 * 10 8 7 12 12 C 1.37870 * 120.00122 * 154.72047 * 10 8 7 13 13 N 1.31515 * 120.00595 * 184.85369 * 12 10 8 14 14 Si 1.86804 * 119.99901 * 4.85542 * 12 10 8 15 15 H 1.48496 * 109.47301 * 84.63514 * 14 12 10 16 16 H 1.48498 * 109.47073 * 204.63613 * 14 12 10 17 17 H 1.48498 * 109.47193 * 324.63386 * 14 12 10 18 18 C 1.50696 * 109.47072 * 175.00200 * 8 7 5 19 19 C 1.38236 * 120.00113 * 55.28028 * 18 8 7 20 20 C 1.38233 * 119.99752 * 179.78683 * 19 18 8 21 21 C 1.38230 * 120.00163 * 0.43679 * 20 19 18 22 22 C 1.38228 * 120.00074 * 359.81484 * 21 20 19 23 23 C 1.38236 * 119.99661 * 235.54809 * 18 8 7 24 24 N 1.34043 * 106.40981 * 180.02562 * 3 2 1 25 25 N 1.28598 * 109.03907 * 359.72653 * 24 3 2 26 26 N 1.28697 * 110.37284 * 0.45432 * 25 24 3 27 27 C 1.46500 * 125.90065 * 179.81739 * 26 25 24 28 28 H 1.08998 * 109.47421 * 269.98850 * 1 2 3 29 29 H 1.09005 * 109.47161 * 29.98508 * 1 2 3 30 30 H 1.09001 * 109.47483 * 149.98457 * 1 2 3 31 31 H 0.96998 * 119.99553 * 0.02562 * 4 3 2 32 32 H 1.08993 * 109.47318 * 300.00261 * 7 5 4 33 33 H 1.08999 * 109.47132 * 60.00541 * 7 5 4 34 34 H 0.96994 * 120.00513 * 180.02562 * 13 12 10 35 35 H 1.07998 * 119.99695 * 359.97438 * 19 18 8 36 36 H 1.08005 * 119.99778 * 180.27404 * 20 19 18 37 37 H 1.08003 * 120.00182 * 179.83552 * 21 20 19 38 38 H 1.08007 * 120.00242 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00094 * 359.97438 * 23 18 8 40 40 H 1.09002 * 109.47156 * 269.69035 * 27 26 25 41 41 H 1.08999 * 109.47441 * 29.69140 * 27 26 25 42 42 H 1.09002 * 109.47491 * 149.68606 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.0852 0.0000 4 7 1.9331 2.4343 0.0010 5 6 2.8662 3.4069 0.0003 6 8 4.0440 3.1175 -0.0016 7 6 2.4458 4.8541 0.0007 8 6 3.6888 5.7463 -0.0008 9 1 4.3267 5.4792 -0.8434 10 6 4.4487 5.5513 1.2860 11 1 3.9320 5.2138 2.1724 12 6 5.8033 5.8038 1.3317 13 7 6.4843 5.5432 2.4262 14 14 6.6715 6.5160 -0.1611 15 1 6.5324 7.9944 -0.1561 16 1 8.1110 6.1542 -0.1158 17 1 6.0615 5.9656 -1.3980 18 6 3.2715 7.1890 -0.1241 19 6 2.3770 7.7296 0.7806 20 6 1.9976 9.0542 0.6700 21 6 2.5057 9.8358 -0.3506 22 6 3.3962 9.2939 -1.2584 23 6 3.7790 7.9704 -1.1454 24 7 3.5797 0.6136 -0.0006 25 7 3.5447 -0.6719 0.0049 26 7 2.3265 -1.0870 -0.0004 27 6 1.8961 -2.4873 -0.0006 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 0.9912 2.6657 0.0021 32 1 1.8503 5.0598 -0.8887 33 1 1.8518 5.0597 0.8913 34 1 7.4372 5.7212 2.4585 35 1 1.9769 7.1178 1.5756 36 1 1.3021 9.4778 1.3795 37 1 2.2073 10.8701 -0.4385 38 1 3.7929 9.9045 -2.0561 39 1 4.4748 7.5470 -1.8545 40 1 1.7890 -2.8344 -1.0283 41 1 2.6401 -3.0962 0.5129 42 1 0.9388 -2.5733 0.5136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361618256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:27 Heat of formation + Delta-G solvation = 69.127916 kcal Electronic energy + Delta-G solvation = -25637.882661 eV Core-core repulsion = 22005.450350 eV Total energy + Delta-G solvation = -3632.432312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.19695 -40.80484 -39.82633 -36.47858 -35.72169 -35.39803 -33.75809 -32.72814 -31.62399 -30.46334 -28.84131 -28.16654 -27.58488 -24.73603 -23.60654 -23.17510 -22.22804 -21.46591 -20.57583 -19.05341 -18.68756 -18.07998 -17.74343 -17.31653 -16.69667 -16.52770 -16.09511 -15.68339 -15.46623 -14.96601 -14.89879 -14.64414 -14.34684 -14.12247 -13.97549 -13.88716 -13.80144 -13.61515 -13.33231 -13.20087 -12.98861 -12.70452 -12.65269 -12.14327 -12.00334 -11.88518 -11.82026 -11.70479 -11.46336 -11.07165 -10.76406 -10.69569 -10.52846 -9.61510 -9.29980 -9.18984 -8.23563 -6.19413 0.54206 0.67441 0.73255 1.27205 1.32283 1.32501 1.36932 1.43744 2.11505 2.21345 2.37347 3.07502 3.20403 3.46080 3.79237 3.85765 3.93297 4.09221 4.28938 4.30157 4.34803 4.41563 4.44444 4.53442 4.61704 4.64099 4.68989 4.79278 4.83786 4.87447 4.97577 5.06260 5.13396 5.22966 5.38169 5.40094 5.61033 5.69801 5.74564 5.77134 5.82261 6.01627 6.31188 6.34994 6.54211 6.79607 7.40107 7.42876 7.66642 8.93975 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.003802 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.685365 B = 7362.508800 C = 8438.666668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.036 4.036 3 C 0.188 3.812 4 N -0.631 5.631 5 C 0.498 3.502 6 O -0.517 6.517 7 C -0.101 4.101 8 C 0.049 3.951 9 H 0.029 0.971 10 C -0.460 4.460 11 H 0.035 0.965 12 C 0.018 3.982 13 N -0.953 5.953 14 Si 0.921 3.079 15 H -0.256 1.256 16 H -0.304 1.304 17 H -0.254 1.254 18 C -0.060 4.060 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.163 4.163 24 N -0.314 5.314 25 N -0.121 5.121 26 N -0.281 5.281 27 C 0.070 3.930 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.435 0.565 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.258 0.742 35 H 0.121 0.879 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.921 -7.792 -8.113 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.173 4.173 3 C -0.044 4.044 4 N -0.286 5.286 5 C 0.285 3.715 6 O -0.388 6.388 7 C -0.141 4.141 8 C 0.029 3.971 9 H 0.047 0.953 10 C -0.498 4.498 11 H 0.053 0.947 12 C -0.178 4.178 13 N -0.595 5.595 14 Si 0.748 3.252 15 H -0.181 1.181 16 H -0.231 1.231 17 H -0.178 1.178 18 C -0.061 4.061 19 C -0.137 4.137 20 C -0.137 4.137 21 C -0.158 4.158 22 C -0.142 4.142 23 C -0.181 4.181 24 N -0.182 5.182 25 N -0.100 5.100 26 N -0.078 5.078 27 C -0.069 4.069 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.276 0.724 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.371 -8.376 -8.046 23.449 hybrid contribution 0.298 0.267 -0.125 0.419 sum -20.073 -8.109 -8.172 23.140 Atomic orbital electron populations 1.20526 0.81035 1.06275 1.05128 1.22161 0.97635 0.84361 1.13112 1.19085 0.90172 0.87512 1.07630 1.42885 1.11185 0.99814 1.74710 1.21553 0.85692 0.88824 0.75450 1.90861 1.19506 1.83497 1.44888 1.21555 0.99375 0.87890 1.05298 1.18112 0.93776 0.88815 0.96348 0.95285 1.20847 0.92698 1.41052 0.95206 0.94666 1.25628 0.98559 0.95915 0.97699 1.70036 1.08037 1.51453 1.29990 0.86206 0.76955 0.79881 0.82200 1.18058 1.23142 1.17836 1.20428 0.94648 0.97220 0.93805 1.21060 0.98167 0.96201 0.98273 1.21439 1.00327 0.93387 0.98585 1.21346 0.98256 1.00758 0.95463 1.21317 0.98318 0.94322 1.00281 1.21186 1.01770 0.95869 0.99289 1.75452 1.21564 1.01100 1.20112 1.78260 1.03672 1.05772 1.22295 1.47636 1.03924 1.10267 1.45956 1.22774 1.04276 0.72981 1.06876 0.88427 0.88207 0.87663 0.72414 0.86474 0.87311 0.93363 0.86128 0.83702 0.83459 0.84542 0.88236 0.86970 0.87759 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 9.84 71.23 0.70 0.11 16 2 C -0.04 -0.83 7.04 41.35 0.29 -0.54 16 3 C 0.19 6.56 7.76 131.30 1.02 7.58 16 4 N -0.63 -19.88 5.46 -308.75 -1.69 -21.56 16 5 C 0.50 21.09 7.55 87.66 0.66 21.75 16 6 O -0.52 -29.39 13.76 -3.07 -0.04 -29.44 16 7 C -0.10 -3.69 4.84 29.85 0.14 -3.55 16 8 C 0.05 2.31 1.24 -12.28 -0.02 2.30 16 9 H 0.03 1.52 5.26 -2.38 -0.01 1.51 16 10 C -0.46 -27.25 7.19 25.60 0.18 -27.07 16 11 H 0.04 2.28 8.05 -2.91 -0.02 2.25 16 12 C 0.02 1.15 5.47 84.65 0.46 1.61 16 13 N -0.95 -65.52 13.96 21.44 0.30 -65.22 16 14 Si 0.92 50.40 24.76 68.60 1.70 52.10 16 15 H -0.26 -13.08 7.11 99.48 0.71 -12.38 16 16 H -0.30 -16.96 7.11 99.48 0.71 -16.25 16 17 H -0.25 -13.34 5.95 99.48 0.59 -12.75 16 18 C -0.06 -2.50 4.30 -19.87 -0.09 -2.58 16 19 C -0.12 -4.28 8.94 22.27 0.20 -4.08 16 20 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 21 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 22 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 23 C -0.16 -6.35 8.16 22.27 0.18 -6.17 16 24 N -0.31 -14.26 10.72 -55.54 -0.60 -14.85 16 25 N -0.12 -4.52 13.15 37.02 0.49 -4.04 16 26 N -0.28 -6.78 3.76 -354.67 -1.33 -8.11 16 27 C 0.07 0.65 11.09 127.77 1.42 2.06 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.58 7.76 -2.38 -0.02 0.56 16 30 H 0.10 0.26 7.85 -2.39 -0.02 0.24 16 31 H 0.43 8.38 8.29 -92.71 -0.77 7.61 16 32 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.11 3.49 7.33 -2.39 -0.02 3.47 16 34 H 0.26 16.91 8.31 -92.71 -0.77 16.14 16 35 H 0.12 4.18 7.37 -2.91 -0.02 4.16 16 36 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.10 3.99 6.76 -2.91 -0.02 3.97 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.13 0.21 7.77 -2.39 -0.02 0.19 16 Total: -1.00 -101.57 350.79 4.82 -96.74 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.17 Total: 13.64 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 5.83 Total: -19.26 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -2.83 Total: -113.79 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.04 Total: -29.44 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 1.70 Total: 52.10 kcal Total: -101.57 4.82 -96.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361618256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.871 kcal (2) G-P(sol) polarization free energy of solvation -101.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds