Wall clock time and date at job start Tue Mar 31 2020 10:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30514 * 126.34859 * 2 1 4 4 N 1.28608 * 109.67350 * 179.97438 * 3 2 1 5 5 C 1.30523 * 109.66820 * 0.02562 * 4 3 2 6 6 N 1.35489 * 107.31143 * 359.97438 * 5 4 3 7 7 C 1.46493 * 126.98106 * 180.26079 * 6 5 4 8 8 C 1.53004 * 109.47365 * 264.68572 * 7 6 5 9 9 N 1.46499 * 109.47343 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00080 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99944 * 0.02562 * 10 9 8 12 12 C 1.50692 * 120.00063 * 180.02562 * 10 9 8 13 13 H 1.09005 * 109.47327 * 60.00208 * 12 10 9 14 14 C 1.50703 * 109.47272 * 300.00292 * 12 10 9 15 15 H 1.08004 * 119.99697 * 324.87820 * 14 12 10 16 16 C 1.37875 * 120.00364 * 144.88094 * 14 12 10 17 17 N 1.31519 * 119.99823 * 5.19243 * 16 14 12 18 18 Si 1.86801 * 120.00232 * 185.19308 * 16 14 12 19 19 H 1.48498 * 109.46912 * 59.99665 * 18 16 14 20 20 H 1.48499 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47070 * 300.00016 * 18 16 14 22 22 C 1.50705 * 109.47336 * 180.02562 * 12 10 9 23 23 C 1.38230 * 119.99860 * 66.01040 * 22 12 10 24 24 C 1.38239 * 119.99978 * 179.79042 * 23 22 12 25 25 C 1.38238 * 119.99823 * 0.44588 * 24 23 22 26 26 C 1.38239 * 119.99719 * 359.80712 * 25 24 23 27 27 C 1.38231 * 119.99955 * 246.28632 * 22 12 10 28 28 H 1.08997 * 109.47050 * 270.04388 * 1 2 3 29 29 H 1.09005 * 109.46435 * 30.04280 * 1 2 3 30 30 H 1.08998 * 109.47164 * 150.03894 * 1 2 3 31 31 H 1.08005 * 126.34123 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47097 * 24.68518 * 7 6 5 33 33 H 1.08999 * 109.47474 * 144.69236 * 7 6 5 34 34 H 1.09002 * 109.47413 * 300.00220 * 8 7 6 35 35 H 1.09005 * 109.46700 * 59.99788 * 8 7 6 36 36 H 0.96999 * 120.00098 * 0.02562 * 9 8 7 37 37 H 0.97000 * 119.99777 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.00136 * 359.97438 * 23 22 12 39 39 H 1.08003 * 120.00036 * 180.26894 * 24 23 22 40 40 H 1.07994 * 120.00062 * 179.83443 * 25 24 23 41 41 H 1.07995 * 119.99550 * 180.02562 * 26 25 24 42 42 H 1.08005 * 120.00103 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0512 0.0000 4 7 3.5126 0.6822 0.0005 5 6 3.5807 -0.6213 0.0004 6 7 2.3100 -1.0915 0.0002 7 6 1.8896 -2.4948 0.0054 8 6 1.6176 -2.9510 -1.4295 9 7 1.1978 -4.3545 -1.4245 10 6 0.9033 -4.9740 -2.5847 11 8 0.9863 -4.3697 -3.6329 12 6 0.4709 -6.4176 -2.5794 13 1 -0.4379 -6.5225 -1.9868 14 6 1.5622 -7.2667 -1.9800 15 1 2.5983 -7.0126 -2.1486 16 6 1.2380 -8.3679 -1.2163 17 7 -0.0185 -8.7371 -1.0950 18 14 2.5832 -9.3355 -0.3541 19 1 3.3064 -8.4452 0.5890 20 1 1.9773 -10.4641 0.3972 21 1 3.5354 -9.8661 -1.3626 22 6 0.2043 -6.8673 -3.9928 23 6 1.2432 -6.9433 -4.9015 24 6 0.9994 -7.3600 -6.1969 25 6 -0.2849 -7.6919 -6.5860 26 6 -1.3247 -7.6108 -5.6786 27 6 -1.0801 -7.1984 -4.3821 28 1 -0.3633 0.0008 1.0276 29 1 -0.3632 0.8897 -0.5145 30 1 -0.3633 -0.8903 -0.5132 31 1 4.4829 -1.2150 0.0003 32 1 2.6791 -3.1090 0.4384 33 1 0.9811 -2.5998 0.5983 34 1 0.8281 -2.3367 -1.8626 35 1 2.5262 -2.8460 -2.0225 36 1 1.1317 -4.8380 -0.5862 37 1 -0.2465 -9.5121 -0.5580 38 1 2.2459 -6.6800 -4.5987 39 1 1.8118 -7.4235 -6.9056 40 1 -0.4758 -8.0148 -7.5986 41 1 -2.3279 -7.8705 -5.9825 42 1 -1.8925 -7.1351 -3.6733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361912145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:42 Heat of formation + Delta-G solvation = 59.084548 kcal Electronic energy + Delta-G solvation = -25286.737575 eV Core-core repulsion = 21653.869750 eV Total energy + Delta-G solvation = -3632.867825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.24130 -39.34913 -37.91854 -36.17905 -33.82786 -33.66849 -32.46802 -31.20817 -29.99846 -29.39291 -27.83914 -27.25959 -24.40929 -23.43017 -22.39338 -21.66629 -20.96300 -20.89956 -19.49478 -17.31271 -16.91558 -16.66784 -15.98909 -15.89351 -15.58030 -15.30653 -14.95328 -14.61195 -14.26544 -14.00127 -13.91672 -13.30558 -13.26854 -13.02174 -12.82543 -12.54106 -12.50948 -12.34384 -11.95436 -11.73891 -11.61309 -11.57399 -11.14930 -11.11553 -10.51732 -10.46602 -10.40427 -10.34402 -10.10272 -9.55911 -9.28787 -8.94390 -8.78618 -8.66316 -8.00730 -7.68510 -6.39490 -4.47099 1.64612 2.19369 2.31961 2.35377 2.77555 3.09992 3.17658 3.18280 3.50594 3.78516 4.16277 4.18102 4.29997 4.47517 4.50963 4.75763 4.81275 4.90102 4.97687 5.20609 5.30670 5.46383 5.56926 5.66155 5.67181 5.73601 5.80858 5.84293 6.04639 6.09963 6.18409 6.42537 6.52052 6.66908 6.75709 6.87575 6.89670 7.07420 7.31175 7.37431 7.50386 7.65090 7.86337 7.95973 8.10550 8.56579 8.61321 9.00992 9.19474 10.68491 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.003637 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.759506 B = 7696.883333 C = 9049.890762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.178 3.822 3 N -0.300 5.300 4 N -0.300 5.300 5 C 0.153 3.847 6 N -0.469 5.469 7 C 0.093 3.907 8 C 0.109 3.891 9 N -0.730 5.730 10 C 0.530 3.470 11 O -0.561 6.561 12 C 0.053 3.947 13 H 0.090 0.910 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.075 3.925 17 N -0.876 5.876 18 Si 0.899 3.101 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.011 4.011 23 C -0.086 4.086 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.118 4.118 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.219 0.781 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.408 0.592 37 H 0.268 0.732 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 6.726 3.110 7.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 N -0.141 5.141 4 N -0.139 5.139 5 C -0.135 4.135 6 N -0.160 5.160 7 C -0.030 4.030 8 C -0.017 4.017 9 N -0.385 5.385 10 C 0.320 3.680 11 O -0.439 6.439 12 C 0.032 3.968 13 H 0.108 0.892 14 C -0.556 4.556 15 H 0.080 0.920 16 C -0.130 4.130 17 N -0.511 5.511 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.012 4.012 23 C -0.104 4.104 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.136 4.136 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.235 0.765 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.243 0.757 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.118 8.456 2.448 8.804 hybrid contribution 0.459 -2.469 0.843 2.649 sum 0.340 5.987 3.290 6.840 Atomic orbital electron populations 1.20275 0.83772 1.04911 1.04058 1.24954 0.97274 0.82824 1.03885 1.74249 0.96507 1.23929 1.19367 1.74237 1.12355 1.09022 1.18286 1.26482 0.88724 0.93463 1.04829 1.46210 1.07175 1.08347 1.54279 1.22151 1.03720 0.77922 0.99221 1.21387 1.01275 0.84976 0.94047 1.45773 1.71356 1.10257 1.11101 1.21772 0.74305 0.90020 0.81916 1.90614 1.53652 1.68102 1.31541 1.18102 1.00488 0.86516 0.91682 0.89204 1.20635 0.91673 1.11351 1.31975 0.91957 1.24971 0.95673 0.96695 0.95687 1.69904 1.16801 1.25806 1.38575 0.86541 0.81686 0.79536 0.79680 1.19979 1.21045 1.19931 1.19985 0.91891 0.94183 0.95139 1.20809 0.98979 0.98056 0.92526 1.20962 0.96315 1.01533 0.96443 1.20810 0.93441 1.03651 0.98706 1.20909 0.98104 1.01806 0.94172 1.20977 0.96724 1.00566 0.95310 0.89554 0.88625 0.90049 0.76501 0.87263 0.87737 0.91455 0.91337 0.75714 0.92172 0.87210 0.87579 0.87672 0.87517 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.14 36.01 0.37 -0.21 16 2 C 0.18 2.10 8.03 -154.98 -1.24 0.86 16 3 N -0.30 -4.49 12.21 32.80 0.40 -4.09 16 4 N -0.30 -4.44 12.21 29.69 0.36 -4.08 16 5 C 0.15 1.72 12.74 -89.95 -1.15 0.57 16 6 N -0.47 -4.95 2.75 -115.30 -0.32 -5.26 16 7 C 0.09 0.80 5.93 -4.04 -0.02 0.78 16 8 C 0.11 1.34 6.00 -4.04 -0.02 1.32 16 9 N -0.73 -11.05 5.46 -60.29 -0.33 -11.38 16 10 C 0.53 10.59 7.04 -10.99 -0.08 10.51 16 11 O -0.56 -12.73 15.42 5.55 0.09 -12.64 16 12 C 0.05 1.16 2.38 -94.08 -0.22 0.94 16 13 H 0.09 2.07 7.13 -51.93 -0.37 1.70 16 14 C -0.52 -11.96 7.46 -34.44 -0.26 -12.22 16 15 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 16 C 0.08 1.77 5.45 -17.82 -0.10 1.68 16 17 N -0.88 -21.70 12.84 55.43 0.71 -20.98 16 18 Si 0.90 18.59 29.54 -169.99 -5.02 13.57 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C -0.01 -0.24 4.30 -104.62 -0.45 -0.69 16 23 C -0.09 -1.86 8.30 -39.58 -0.33 -2.19 16 24 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 25 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 26 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 27 C -0.12 -2.46 9.67 -39.59 -0.38 -2.85 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.59 7.60 -51.93 -0.39 0.20 16 31 H 0.22 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 34 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.41 5.56 8.36 -40.82 -0.34 5.22 16 37 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 38 H 0.11 2.40 7.89 -52.49 -0.41 1.99 16 39 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.11 2.24 7.96 -52.48 -0.42 1.82 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -31.42 365.03 -9.38 -40.79 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.69 Total: 8.99 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -5.08 Total: -10.42 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.83 Total: -45.79 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.42 -9.38 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361912145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.879 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds