Wall clock time and date at job start Tue Mar 31 2020 10:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30514 * 126.34859 * 2 1 4 4 N 1.28608 * 109.67350 * 179.97438 * 3 2 1 5 5 C 1.30523 * 109.66820 * 0.02562 * 4 3 2 6 6 N 1.35489 * 107.31143 * 359.97438 * 5 4 3 7 7 C 1.46493 * 126.98106 * 180.26079 * 6 5 4 8 8 C 1.53004 * 109.47365 * 264.68572 * 7 6 5 9 9 N 1.46499 * 109.47343 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00080 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99944 * 0.02562 * 10 9 8 12 12 C 1.50692 * 120.00063 * 180.02562 * 10 9 8 13 13 H 1.09005 * 109.47327 * 60.00208 * 12 10 9 14 14 C 1.50703 * 109.47272 * 300.00292 * 12 10 9 15 15 H 1.08004 * 119.99697 * 324.87820 * 14 12 10 16 16 C 1.37875 * 120.00364 * 144.88094 * 14 12 10 17 17 N 1.31519 * 119.99823 * 5.19243 * 16 14 12 18 18 Si 1.86801 * 120.00232 * 185.19308 * 16 14 12 19 19 H 1.48498 * 109.46912 * 59.99665 * 18 16 14 20 20 H 1.48499 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47070 * 300.00016 * 18 16 14 22 22 C 1.50705 * 109.47336 * 180.02562 * 12 10 9 23 23 C 1.38230 * 119.99860 * 66.01040 * 22 12 10 24 24 C 1.38239 * 119.99978 * 179.79042 * 23 22 12 25 25 C 1.38238 * 119.99823 * 0.44588 * 24 23 22 26 26 C 1.38239 * 119.99719 * 359.80712 * 25 24 23 27 27 C 1.38231 * 119.99955 * 246.28632 * 22 12 10 28 28 H 1.08997 * 109.47050 * 270.04388 * 1 2 3 29 29 H 1.09005 * 109.46435 * 30.04280 * 1 2 3 30 30 H 1.08998 * 109.47164 * 150.03894 * 1 2 3 31 31 H 1.08005 * 126.34123 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47097 * 24.68518 * 7 6 5 33 33 H 1.08999 * 109.47474 * 144.69236 * 7 6 5 34 34 H 1.09002 * 109.47413 * 300.00220 * 8 7 6 35 35 H 1.09005 * 109.46700 * 59.99788 * 8 7 6 36 36 H 0.96999 * 120.00098 * 0.02562 * 9 8 7 37 37 H 0.97000 * 119.99777 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.00136 * 359.97438 * 23 22 12 39 39 H 1.08003 * 120.00036 * 180.26894 * 24 23 22 40 40 H 1.07994 * 120.00062 * 179.83443 * 25 24 23 41 41 H 1.07995 * 119.99550 * 180.02562 * 26 25 24 42 42 H 1.08005 * 120.00103 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0512 0.0000 4 7 3.5126 0.6822 0.0005 5 6 3.5807 -0.6213 0.0004 6 7 2.3100 -1.0915 0.0002 7 6 1.8896 -2.4948 0.0054 8 6 1.6176 -2.9510 -1.4295 9 7 1.1978 -4.3545 -1.4245 10 6 0.9033 -4.9740 -2.5847 11 8 0.9863 -4.3697 -3.6329 12 6 0.4709 -6.4176 -2.5794 13 1 -0.4379 -6.5225 -1.9868 14 6 1.5622 -7.2667 -1.9800 15 1 2.5983 -7.0126 -2.1486 16 6 1.2380 -8.3679 -1.2163 17 7 -0.0185 -8.7371 -1.0950 18 14 2.5832 -9.3355 -0.3541 19 1 3.3064 -8.4452 0.5890 20 1 1.9773 -10.4641 0.3972 21 1 3.5354 -9.8661 -1.3626 22 6 0.2043 -6.8673 -3.9928 23 6 1.2432 -6.9433 -4.9015 24 6 0.9994 -7.3600 -6.1969 25 6 -0.2849 -7.6919 -6.5860 26 6 -1.3247 -7.6108 -5.6786 27 6 -1.0801 -7.1984 -4.3821 28 1 -0.3633 0.0008 1.0276 29 1 -0.3632 0.8897 -0.5145 30 1 -0.3633 -0.8903 -0.5132 31 1 4.4829 -1.2150 0.0003 32 1 2.6791 -3.1090 0.4384 33 1 0.9811 -2.5998 0.5983 34 1 0.8281 -2.3367 -1.8626 35 1 2.5262 -2.8460 -2.0225 36 1 1.1317 -4.8380 -0.5862 37 1 -0.2465 -9.5121 -0.5580 38 1 2.2459 -6.6800 -4.5987 39 1 1.8118 -7.4235 -6.9056 40 1 -0.4758 -8.0148 -7.5986 41 1 -2.3279 -7.8705 -5.9825 42 1 -1.8925 -7.1351 -3.6733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361912145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:41 Heat of formation + Delta-G solvation = 42.078700 kcal Electronic energy + Delta-G solvation = -25287.475004 eV Core-core repulsion = 21653.869750 eV Total energy + Delta-G solvation = -3633.605254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.14050 -40.88717 -39.39549 -37.23885 -35.51820 -34.92748 -33.28081 -32.88175 -31.53109 -30.52507 -28.89153 -28.53487 -25.94369 -24.65498 -23.29233 -23.20529 -22.41072 -21.82310 -20.95875 -18.71413 -18.17485 -17.93376 -17.47871 -17.09470 -16.60088 -16.56604 -16.24029 -15.94445 -15.71705 -15.43287 -15.05547 -14.60585 -14.48403 -14.03585 -13.91970 -13.88493 -13.58784 -13.45112 -13.37844 -13.28545 -12.86953 -12.71472 -12.70785 -12.58625 -12.18309 -11.94328 -11.67855 -11.37500 -11.29785 -11.26928 -10.67489 -10.48318 -10.21273 -10.01353 -9.55623 -9.25640 -8.19190 -6.31390 0.75676 0.77401 0.82165 1.37831 1.46195 1.49618 1.55326 1.83485 1.91936 2.44516 2.55659 3.09867 3.27663 3.41989 3.55424 3.60578 3.76504 4.08417 4.18890 4.22631 4.30152 4.34076 4.39547 4.47851 4.54579 4.63970 4.67497 4.80240 4.88381 4.92828 4.97527 4.98689 5.11633 5.23955 5.37210 5.45157 5.54689 5.67030 5.79049 5.82631 5.89457 5.95703 6.23509 6.40812 6.68046 6.77750 7.36393 7.50506 7.68860 8.88263 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.003637 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.759506 B = 7696.883333 C = 9049.890762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.179 3.821 3 N -0.345 5.345 4 N -0.346 5.346 5 C 0.161 3.839 6 N -0.468 5.468 7 C 0.104 3.896 8 C 0.113 3.887 9 N -0.713 5.713 10 C 0.530 3.470 11 O -0.593 6.593 12 C 0.054 3.946 13 H 0.072 0.928 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.038 3.962 17 N -0.903 5.903 18 Si 0.952 3.048 19 H -0.257 1.257 20 H -0.288 1.288 21 H -0.284 1.284 22 C -0.038 4.038 23 C -0.112 4.112 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.141 4.141 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.253 0.747 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.417 0.583 37 H 0.267 0.733 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 5.919 3.224 6.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 N -0.185 5.185 4 N -0.183 5.183 5 C -0.128 4.128 6 N -0.159 5.159 7 C -0.019 4.019 8 C -0.012 4.012 9 N -0.366 5.366 10 C 0.319 3.681 11 O -0.474 6.474 12 C 0.033 3.967 13 H 0.090 0.910 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.164 4.164 17 N -0.540 5.540 18 Si 0.777 3.223 19 H -0.181 1.181 20 H -0.213 1.213 21 H -0.210 1.210 22 C -0.039 4.039 23 C -0.130 4.130 24 C -0.156 4.156 25 C -0.163 4.163 26 C -0.149 4.149 27 C -0.160 4.160 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.269 0.731 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.102 7.680 2.607 8.111 hybrid contribution 0.427 -2.221 0.723 2.375 sum 0.325 5.459 3.330 6.402 Atomic orbital electron populations 1.20446 0.81441 1.05474 1.05577 1.25567 0.98564 0.82588 1.02229 1.74160 0.97104 1.25765 1.21464 1.74141 1.12780 1.11050 1.20377 1.27162 0.90008 0.92897 1.02699 1.46301 1.06859 1.08719 1.54058 1.22192 1.05911 0.77052 0.96717 1.21418 1.00199 0.82912 0.96660 1.45529 1.69605 1.11418 1.10038 1.21421 0.74485 0.89512 0.82698 1.90588 1.55307 1.68537 1.32919 1.18007 0.99387 0.87788 0.91549 0.91013 1.20705 0.91535 1.11524 1.31700 0.92688 1.25550 0.97163 0.97399 0.96299 1.70006 1.18239 1.26276 1.39459 0.85707 0.79364 0.78462 0.78721 1.18122 1.21335 1.20954 1.20152 0.92844 0.95303 0.95563 1.20855 0.98262 0.99897 0.93981 1.21328 0.97991 1.00415 0.95836 1.21265 0.92538 1.02169 1.00344 1.21313 1.00030 1.00337 0.93191 1.21156 0.96302 1.01756 0.96738 0.87455 0.88447 0.89067 0.73097 0.84791 0.85230 0.92194 0.92782 0.74621 0.92367 0.88646 0.84904 0.83770 0.84330 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.14 71.24 0.72 -0.30 16 2 C 0.18 4.03 8.03 137.98 1.11 5.14 16 3 N -0.34 -10.33 12.21 -50.15 -0.61 -10.94 16 4 N -0.35 -10.18 12.21 -59.99 -0.73 -10.91 16 5 C 0.16 3.38 12.74 180.11 2.29 5.68 16 6 N -0.47 -8.99 2.75 -518.71 -1.42 -10.42 16 7 C 0.10 1.50 5.93 86.38 0.51 2.01 16 8 C 0.11 2.64 6.00 86.38 0.52 3.16 16 9 N -0.71 -20.97 5.46 -463.05 -2.53 -23.50 16 10 C 0.53 21.42 7.04 87.65 0.62 22.04 16 11 O -0.59 -27.39 15.42 -3.05 -0.05 -27.43 16 12 C 0.05 2.41 2.38 -13.03 -0.03 2.38 16 13 H 0.07 3.41 7.13 -2.38 -0.02 3.40 16 14 C -0.52 -24.04 7.46 25.60 0.19 -23.85 16 15 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 16 C 0.04 1.81 5.45 84.65 0.46 2.27 16 17 N -0.90 -45.11 12.84 21.45 0.28 -44.84 16 18 Si 0.95 37.65 29.54 68.60 2.03 39.68 16 19 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 20 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 C -0.04 -1.71 4.30 -19.87 -0.09 -1.80 16 23 C -0.11 -4.90 8.30 22.27 0.18 -4.71 16 24 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 25 C -0.15 -4.88 10.05 22.27 0.22 -4.66 16 26 C -0.13 -4.66 10.05 22.27 0.22 -4.44 16 27 C -0.14 -5.95 9.67 22.27 0.22 -5.74 16 28 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.09 1.14 7.60 -2.39 -0.02 1.12 16 31 H 0.25 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.13 1.31 8.03 -2.39 -0.02 1.29 16 34 H 0.06 1.52 7.80 -2.39 -0.02 1.50 16 35 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.42 10.78 8.36 -92.71 -0.77 10.00 16 37 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 38 H 0.10 4.32 7.89 -2.91 -0.02 4.29 16 39 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.11 4.50 7.96 -2.91 -0.02 4.48 16 Total: -1.00 -70.33 365.03 4.60 -65.73 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.26 Total: 30.34 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 7.38 Total: -7.70 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -5.02 Total: -100.61 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -70.33 4.60 -65.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361912145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.811 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds