Wall clock time and date at job start Tue Mar 31 2020 10:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47365 * 2 1 4 4 N 1.30840 * 125.95913 * 305.02156 * 3 2 1 5 5 C 1.33234 * 109.82711 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.52611 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47120 * 89.99808 * 6 5 4 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 6 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 N 1.30716 * 108.94655 * 0.26367 * 5 4 3 26 26 N 1.34422 * 125.96109 * 125.00134 * 3 2 1 27 27 H 0.97000 * 126.82488 * 0.02562 * 26 3 2 28 28 H 1.09002 * 109.47050 * 59.99912 * 1 2 3 29 29 H 1.08998 * 109.47763 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47053 * 300.00422 * 1 2 3 31 31 H 1.08998 * 109.46742 * 239.99625 * 2 1 3 32 32 H 1.09002 * 109.47050 * 120.00088 * 2 1 3 33 33 H 1.08994 * 109.47016 * 329.99881 * 6 5 4 34 34 H 1.08997 * 109.47028 * 209.99916 * 6 5 4 35 35 H 0.97002 * 120.00149 * 0.02562 * 7 6 5 36 36 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 37 37 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 38 38 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 40 40 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 41 41 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 42 42 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7155 2.3478 -0.8673 5 6 2.3420 3.4837 -0.5638 6 6 2.2297 4.7772 -1.3290 7 7 1.1267 5.5727 -0.7841 8 6 0.8381 6.7773 -1.3152 9 8 1.4912 7.2025 -2.2446 10 6 -0.2961 7.5958 -0.7544 11 6 -0.4085 8.8892 -1.5197 12 6 0.2139 10.0247 -1.0527 13 6 0.1065 11.2171 -1.7511 14 6 -0.6214 11.2795 -2.9295 15 6 -1.2466 10.1555 -3.4185 16 6 -1.1446 8.9393 -2.7176 17 6 -1.7824 7.7776 -3.2108 18 1 -2.0738 6.9914 -2.5301 19 6 -2.0356 7.6465 -4.5808 20 7 -1.4180 8.4191 -5.4371 21 14 -3.2558 6.3686 -5.1870 22 1 -2.5294 5.1281 -5.5595 23 1 -4.2320 6.0660 -4.1096 24 1 -3.9761 6.8957 -6.3739 25 7 3.0739 3.2930 0.5023 26 7 2.8839 1.9570 0.8913 27 1 3.2896 1.5090 1.6500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0378 4.5620 -2.3801 34 1 3.1610 5.3360 -1.2367 35 1 0.6046 5.2328 -0.0406 36 1 -0.1039 7.8108 0.2968 37 1 -1.2275 7.0374 -0.8467 38 1 0.7839 9.9874 -0.1362 39 1 0.5941 12.1043 -1.3748 40 1 -0.6981 12.2138 -3.4657 41 1 -1.8127 10.2062 -4.3368 42 1 -1.5938 8.3285 -6.3867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362635250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:34 Heat of formation + Delta-G solvation = 34.781127 kcal Electronic energy + Delta-G solvation = -25052.355787 eV Core-core repulsion = 21418.434087 eV Total energy + Delta-G solvation = -3633.921700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.33322 -40.71851 -39.10673 -36.28237 -35.44482 -34.92640 -33.71561 -33.31745 -31.38260 -31.26075 -29.29666 -27.58687 -26.59130 -25.25765 -22.81049 -22.49636 -22.06595 -21.50841 -20.92422 -19.13713 -18.97314 -17.86174 -17.46347 -17.15334 -16.57589 -16.43995 -16.09946 -15.71522 -15.30664 -15.17510 -15.13146 -14.68580 -14.35665 -14.08945 -13.99217 -13.69389 -13.52321 -13.26284 -13.00534 -12.91667 -12.74094 -12.57767 -12.47826 -12.44792 -12.08304 -12.01802 -11.36980 -11.29227 -11.18683 -11.14874 -10.98269 -10.86586 -10.56537 -10.11294 -9.19069 -9.14708 -8.54217 -6.23319 0.38662 1.02475 1.15489 1.37808 1.50200 1.52589 1.56653 1.58865 1.87212 2.23465 2.48482 2.82932 2.87726 3.40893 3.69419 3.77412 4.14140 4.21691 4.31431 4.36505 4.42799 4.52767 4.60381 4.64184 4.69550 4.76357 4.81255 4.99185 5.04175 5.05648 5.12006 5.14214 5.28028 5.39418 5.40000 5.43769 5.58316 5.81942 6.07259 6.11679 6.17538 6.25030 6.47060 6.60182 6.78601 6.96277 7.02816 7.15309 7.43288 8.43433 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003599 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.254934 B = 7777.847795 C = 9369.631052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C 0.292 3.708 4 N -0.559 5.559 5 C 0.211 3.789 6 C 0.221 3.779 7 N -0.719 5.719 8 C 0.522 3.478 9 O -0.567 6.567 10 C -0.065 4.065 11 C -0.187 4.187 12 C -0.091 4.091 13 C -0.245 4.245 14 C -0.116 4.116 15 C -0.195 4.195 16 C 0.098 3.902 17 C -0.485 4.485 18 H 0.082 0.918 19 C 0.032 3.968 20 N -0.831 5.831 21 Si 0.972 3.028 22 H -0.271 1.271 23 H -0.249 1.249 24 H -0.268 1.268 25 N -0.316 5.316 26 N -0.465 5.465 27 H 0.458 0.542 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.410 0.590 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -19.409 14.028 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C 0.014 3.986 4 N -0.289 5.289 5 C -0.072 4.072 6 C 0.095 3.905 7 N -0.374 5.374 8 C 0.310 3.690 9 O -0.444 6.444 10 C -0.105 4.105 11 C -0.189 4.189 12 C -0.109 4.109 13 C -0.264 4.264 14 C -0.134 4.134 15 C -0.215 4.215 16 C 0.095 3.905 17 C -0.515 4.515 18 H 0.100 0.900 19 C -0.182 4.182 20 N -0.457 5.457 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.172 1.172 24 H -0.193 1.193 25 N -0.147 5.147 26 N -0.185 5.185 27 H 0.308 0.692 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.498 -18.513 13.124 23.134 hybrid contribution -0.211 -0.612 -0.139 0.662 sum 4.288 -19.124 12.986 23.511 Atomic orbital electron populations 1.21689 0.92991 1.03595 1.02049 1.20458 0.97352 0.83407 1.06785 1.25238 0.89248 0.98464 0.85624 1.70361 1.28980 0.99927 1.29585 1.23851 0.94443 0.95526 0.93397 1.19131 0.91665 0.84048 0.95650 1.45754 1.35060 1.18611 1.37972 1.21173 0.84942 0.80800 0.82042 1.90701 1.52692 1.71503 1.29465 1.20278 0.96666 0.93674 0.99846 1.19445 1.05054 0.94332 1.00044 1.20739 0.98154 0.92857 0.99134 1.20706 1.08665 0.98178 0.98836 1.20948 0.98617 0.97332 0.96547 1.21297 1.05293 0.93049 1.01865 1.17736 0.89064 0.92834 0.90819 1.19727 1.35185 1.03499 0.93050 0.90030 1.26733 0.96074 0.98421 0.96940 1.69935 1.34980 1.36995 1.03822 0.85344 0.78618 0.77915 0.78776 1.19594 1.17243 1.19282 1.77971 1.24679 0.95616 1.16448 1.47981 1.36722 1.07846 1.26000 0.69195 0.93517 0.89047 0.92877 0.87095 0.85715 0.90598 0.89717 0.75437 0.86679 0.88181 0.86505 0.86740 0.87763 0.88584 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.87 71.98 0.71 -0.71 16 2 C -0.04 -0.31 6.56 29.85 0.20 -0.11 16 3 C 0.29 5.01 7.51 138.23 1.04 6.04 16 4 N -0.56 -14.60 11.16 -179.73 -2.01 -16.60 16 5 C 0.21 5.89 7.51 138.63 1.04 6.93 16 6 C 0.22 7.10 6.30 85.63 0.54 7.64 16 7 N -0.72 -23.43 5.55 -466.79 -2.59 -26.02 16 8 C 0.52 21.75 7.82 87.65 0.69 22.43 16 9 O -0.57 -29.93 16.03 -3.04 -0.05 -29.98 16 10 C -0.07 -2.55 5.35 29.10 0.16 -2.39 16 11 C -0.19 -9.16 4.43 -19.40 -0.09 -9.25 16 12 C -0.09 -4.17 9.66 22.22 0.21 -3.96 16 13 C -0.24 -11.41 10.05 22.46 0.23 -11.18 16 14 C -0.12 -5.86 10.02 22.22 0.22 -5.64 16 15 C -0.20 -11.05 8.68 22.73 0.20 -10.86 16 16 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16 17 C -0.48 -26.66 8.46 23.46 0.20 -26.46 16 18 H 0.08 4.19 6.36 -2.91 -0.02 4.17 16 19 C 0.03 1.72 5.16 85.26 0.44 2.16 16 20 N -0.83 -47.18 10.98 21.83 0.24 -46.94 16 21 Si 0.97 40.45 29.59 68.60 2.03 42.48 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 N -0.32 -7.85 12.80 -51.33 -0.66 -8.51 16 26 N -0.46 -7.32 7.45 -50.71 -0.38 -7.70 16 27 H 0.46 3.19 8.96 -213.10 -1.91 1.28 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.41 10.98 8.46 -92.71 -0.78 10.20 16 36 H 0.12 3.51 8.06 -2.39 -0.02 3.50 16 37 H 0.10 3.76 6.48 -2.39 -0.02 3.74 16 38 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.10 5.68 6.23 -2.91 -0.02 5.66 16 42 H 0.28 14.64 8.30 -92.71 -0.77 13.88 16 Total: -1.00 -79.49 361.84 0.63 -78.86 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -1.62 Total: 34.42 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 5.66 Total: -20.02 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -5.39 Total: -105.77 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.05 Total: -29.98 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -79.49 0.63 -78.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362635250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.645 kcal (2) G-P(sol) polarization free energy of solvation -79.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds