Wall clock time and date at job start Tue Mar 31 2020 11:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46811 * 2 1 4 4 C 1.52996 * 109.47176 * 240.00219 * 2 1 3 5 5 C 1.50702 * 109.46713 * 119.99987 * 2 1 3 6 6 O 1.21271 * 120.00033 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99514 * 180.02562 * 5 2 1 8 8 C 1.46500 * 119.99541 * 180.02562 * 7 5 2 9 9 C 1.53004 * 109.46740 * 179.97438 * 8 7 5 10 10 C 1.53501 * 114.20620 * 184.99715 * 9 8 7 11 11 N 1.47065 * 87.98741 * 220.15007 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47145 * 60.00107 * 20 18 16 22 22 H 1.48496 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47229 * 300.00299 * 20 18 16 24 24 C 1.47067 * 87.88377 * 27.34414 * 11 10 9 25 25 H 1.08992 * 109.47187 * 300.00274 * 1 2 3 26 26 H 1.09004 * 109.47059 * 59.99926 * 1 2 3 27 27 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47064 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47529 * 299.99543 * 3 2 1 30 30 H 1.09002 * 109.47330 * 59.99971 * 3 2 1 31 31 H 1.09000 * 109.46982 * 299.99736 * 4 2 1 32 32 H 1.09000 * 109.47472 * 59.99519 * 4 2 1 33 33 H 1.08999 * 109.47190 * 180.02562 * 4 2 1 34 34 H 0.97004 * 120.00382 * 359.97438 * 7 5 2 35 35 H 1.09000 * 109.47448 * 60.00063 * 8 7 5 36 36 H 1.08992 * 109.47028 * 299.99605 * 8 7 5 37 37 H 1.09001 * 113.28594 * 318.06464 * 9 8 7 38 38 H 1.09001 * 113.46643 * 105.36708 * 10 9 8 39 39 H 1.09004 * 113.51834 * 334.94152 * 10 9 8 40 40 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 41 41 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 42 42 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 43 43 H 1.09001 * 113.47005 * 87.43764 * 24 11 10 44 44 H 1.09003 * 113.46723 * 217.87945 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0290 7 7 3.3573 -0.8331 1.4440 8 6 3.8456 -1.5242 2.6399 9 6 5.3756 -1.5241 2.6400 10 6 6.0050 -2.3275 3.7866 11 7 7.0084 -1.2600 3.9147 12 6 8.2826 -1.1724 4.3451 13 8 8.8534 -2.1606 4.7553 14 6 8.9976 0.1539 4.3176 15 16 10.6790 -0.0540 4.9546 16 6 11.2669 1.6009 4.8121 17 1 10.6198 2.3721 4.4213 18 6 12.5597 1.9147 5.2080 19 7 13.3468 0.9759 5.6894 20 14 13.1833 3.6690 5.0563 21 1 12.3298 4.5699 5.8718 22 1 14.5847 3.7400 5.5423 23 1 13.1312 4.0916 3.6337 24 6 6.0074 -0.3289 3.3725 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 3.9877 -0.4645 0.8055 35 1 3.4827 -2.5520 2.6393 36 1 3.4818 -1.0110 3.5300 37 1 5.8066 -1.7307 1.6604 38 1 6.4247 -3.2819 3.4685 39 1 5.3575 -2.4216 4.6584 40 1 8.4598 0.8696 4.9394 41 1 9.0399 0.5227 3.2928 42 1 14.2504 1.1950 5.9658 43 1 5.3599 0.1045 4.1348 44 1 6.4292 0.4195 2.7017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688683310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:56 Heat of formation + Delta-G solvation = -50.540105 kcal Electronic energy + Delta-G solvation = -23215.106088 eV Core-core repulsion = 19680.635782 eV Total energy + Delta-G solvation = -3534.470306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79209 -40.10895 -37.73447 -36.04211 -35.01154 -32.45786 -31.07011 -29.07290 -27.84878 -27.57561 -26.25616 -25.97674 -25.39565 -22.94021 -21.36028 -19.62482 -19.08339 -17.74432 -17.22144 -16.75710 -16.59611 -15.92503 -15.62009 -15.34449 -14.83054 -14.73157 -14.48205 -14.31192 -13.97661 -13.82157 -13.34970 -13.15406 -12.86524 -12.80543 -12.70964 -12.53507 -12.36408 -12.24967 -12.17411 -11.96626 -11.66301 -11.43018 -11.38638 -11.07604 -11.06133 -10.88649 -10.79569 -10.01479 -9.86070 -9.48777 -9.40002 -9.08732 -8.66899 -8.27907 -6.53978 -6.24073 -3.95477 2.30990 2.66522 2.78123 3.01581 3.21325 3.22015 3.26883 3.52207 3.90487 4.16593 4.17540 4.27417 4.39136 4.44281 4.57069 4.73234 4.78156 4.93914 5.05674 5.10873 5.12917 5.22011 5.22912 5.24980 5.32511 5.34356 5.38287 5.41838 5.45734 5.46377 5.55848 5.63242 5.72793 5.79319 5.84966 5.88128 5.96556 6.06756 6.09772 7.10502 7.56384 7.79700 7.87130 8.32188 8.48930 9.20796 10.83287 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.002240 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.191594 B =12496.102575 C =13542.085476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.141 4.141 5 C 0.522 3.478 6 O -0.539 6.539 7 N -0.728 5.728 8 C 0.131 3.869 9 C -0.142 4.142 10 C 0.116 3.884 11 N -0.654 5.654 12 C 0.562 3.438 13 O -0.513 6.513 14 C -0.144 4.144 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.920 3.080 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.106 3.894 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.402 0.598 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.086 0.914 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.903 -0.778 -14.219 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.308 3.692 6 O -0.415 6.415 7 N -0.380 5.380 8 C 0.007 3.993 9 C -0.161 4.161 10 C -0.008 4.008 11 N -0.393 5.393 12 C 0.352 3.648 13 O -0.386 6.386 14 C -0.295 4.295 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.018 4.018 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.236 0.764 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.160 -2.624 -12.839 27.485 hybrid contribution 0.104 2.502 -0.791 2.626 sum -24.056 -0.121 -13.629 27.649 Atomic orbital electron populations 1.21666 0.91891 1.02872 1.02131 1.20835 0.98155 0.96509 0.93573 1.21882 1.01315 0.93636 1.03092 1.21877 1.01255 1.00663 0.96078 1.20598 0.82021 0.79277 0.87271 1.90706 1.55350 1.48416 1.47033 1.46015 1.07251 1.59122 1.25633 1.21261 0.91739 0.98133 0.88148 1.23335 0.94078 0.98565 1.00109 1.22791 0.88249 0.93578 0.96197 1.49606 1.10361 1.12734 1.66552 1.19948 0.78690 0.90823 0.75319 1.90721 1.64750 1.38414 1.44747 1.23466 1.04503 0.96151 1.05334 1.85419 1.01071 1.14339 1.82490 1.22805 1.01414 0.94310 1.49901 0.90980 1.24998 0.95650 0.98470 0.94463 1.70004 1.07922 1.32762 1.39539 0.86212 0.77877 0.82681 0.78654 1.19926 1.20775 1.19927 1.23120 0.88700 0.93849 0.96103 0.91889 0.91986 0.91936 0.91984 0.91234 0.91919 0.91998 0.91230 0.92044 0.76355 0.90649 0.90697 0.87024 0.90058 0.89715 0.89328 0.89325 0.92079 0.89617 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 7.76 37.16 0.29 -0.53 16 2 C -0.09 -0.52 0.87 -155.66 -0.14 -0.65 16 3 C -0.14 -0.65 8.37 37.16 0.31 -0.34 16 4 C -0.14 -0.62 8.37 37.16 0.31 -0.31 16 5 C 0.52 4.44 6.48 -10.99 -0.07 4.37 16 6 O -0.54 -6.79 15.98 5.57 0.09 -6.70 16 7 N -0.73 -4.61 5.34 -60.30 -0.32 -4.93 16 8 C 0.13 0.90 5.59 -4.04 -0.02 0.88 16 9 C -0.14 -1.00 4.11 -89.96 -0.37 -1.37 16 10 C 0.12 1.17 8.19 -8.51 -0.07 1.10 16 11 N -0.65 -9.04 3.69 -185.05 -0.68 -9.72 16 12 C 0.56 10.89 8.10 -10.99 -0.09 10.80 16 13 O -0.51 -12.08 16.64 5.56 0.09 -11.99 16 14 C -0.14 -2.96 5.98 36.00 0.22 -2.74 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 20 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.11 0.96 8.00 -8.37 -0.07 0.89 16 25 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.06 0.23 7.56 -51.93 -0.39 -0.17 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 34 H 0.40 1.67 7.31 -40.82 -0.30 1.37 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 40 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.09 0.69 7.88 -51.93 -0.41 0.28 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -36.96 381.25 -8.44 -45.40 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.36 Total: -4.00 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 0.50 Total: -0.84 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.27 Total: -40.01 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.96 -8.44 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688683310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.141 kcal (2) G-P(sol) polarization free energy of solvation -36.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds