Wall clock time and date at job start Tue Mar 31 2020 11:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46811 * 2 1 4 4 C 1.52996 * 109.47176 * 240.00219 * 2 1 3 5 5 C 1.50702 * 109.46713 * 119.99987 * 2 1 3 6 6 O 1.21271 * 120.00033 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99514 * 180.02562 * 5 2 1 8 8 C 1.46500 * 119.99541 * 180.02562 * 7 5 2 9 9 C 1.53004 * 109.46740 * 179.97438 * 8 7 5 10 10 C 1.53501 * 114.20620 * 184.99715 * 9 8 7 11 11 N 1.47065 * 87.98741 * 220.15007 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47145 * 60.00107 * 20 18 16 22 22 H 1.48496 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47229 * 300.00299 * 20 18 16 24 24 C 1.47067 * 87.88377 * 27.34414 * 11 10 9 25 25 H 1.08992 * 109.47187 * 300.00274 * 1 2 3 26 26 H 1.09004 * 109.47059 * 59.99926 * 1 2 3 27 27 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47064 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47529 * 299.99543 * 3 2 1 30 30 H 1.09002 * 109.47330 * 59.99971 * 3 2 1 31 31 H 1.09000 * 109.46982 * 299.99736 * 4 2 1 32 32 H 1.09000 * 109.47472 * 59.99519 * 4 2 1 33 33 H 1.08999 * 109.47190 * 180.02562 * 4 2 1 34 34 H 0.97004 * 120.00382 * 359.97438 * 7 5 2 35 35 H 1.09000 * 109.47448 * 60.00063 * 8 7 5 36 36 H 1.08992 * 109.47028 * 299.99605 * 8 7 5 37 37 H 1.09001 * 113.28594 * 318.06464 * 9 8 7 38 38 H 1.09001 * 113.46643 * 105.36708 * 10 9 8 39 39 H 1.09004 * 113.51834 * 334.94152 * 10 9 8 40 40 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 41 41 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 42 42 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 43 43 H 1.09001 * 113.47005 * 87.43764 * 24 11 10 44 44 H 1.09003 * 113.46723 * 217.87945 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0290 7 7 3.3573 -0.8331 1.4440 8 6 3.8456 -1.5242 2.6399 9 6 5.3756 -1.5241 2.6400 10 6 6.0050 -2.3275 3.7866 11 7 7.0084 -1.2600 3.9147 12 6 8.2826 -1.1724 4.3451 13 8 8.8534 -2.1606 4.7553 14 6 8.9976 0.1539 4.3176 15 16 10.6790 -0.0540 4.9546 16 6 11.2669 1.6009 4.8121 17 1 10.6198 2.3721 4.4213 18 6 12.5597 1.9147 5.2080 19 7 13.3468 0.9759 5.6894 20 14 13.1833 3.6690 5.0563 21 1 12.3298 4.5699 5.8718 22 1 14.5847 3.7400 5.5423 23 1 13.1312 4.0916 3.6337 24 6 6.0074 -0.3289 3.3725 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 3.9877 -0.4645 0.8055 35 1 3.4827 -2.5520 2.6393 36 1 3.4818 -1.0110 3.5300 37 1 5.8066 -1.7307 1.6604 38 1 6.4247 -3.2819 3.4685 39 1 5.3575 -2.4216 4.6584 40 1 8.4598 0.8696 4.9394 41 1 9.0399 0.5227 3.2928 42 1 14.2504 1.1950 5.9658 43 1 5.3599 0.1045 4.1348 44 1 6.4292 0.4195 2.7017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688683310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:56 Heat of formation + Delta-G solvation = -76.931747 kcal Electronic energy + Delta-G solvation = -23216.250516 eV Core-core repulsion = 19680.635782 eV Total energy + Delta-G solvation = -3535.614734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63858 -40.94124 -39.07486 -36.57447 -35.74636 -34.59998 -32.31857 -30.28399 -28.17043 -28.09900 -27.71604 -27.06128 -26.71822 -23.57176 -22.14910 -20.58041 -20.04207 -19.53694 -18.05944 -17.76924 -17.37781 -16.95544 -16.87420 -16.63620 -16.39233 -15.81933 -15.67580 -15.01564 -14.81025 -14.65659 -14.60621 -14.19644 -14.01597 -13.65054 -13.46427 -13.27652 -13.22804 -13.09022 -12.98484 -12.87197 -12.85257 -12.63677 -12.58046 -12.40879 -11.86186 -11.80394 -11.76830 -11.67430 -11.13937 -10.98289 -10.65351 -10.31405 -10.05599 -9.80508 -8.70435 -8.35582 -6.15117 1.19155 1.42201 1.43891 1.52015 1.54842 1.67639 1.95383 2.20026 2.26355 2.98425 3.15390 3.23283 3.60336 3.69668 3.78050 3.88969 3.97526 4.04483 4.15238 4.23910 4.33041 4.41889 4.45598 4.55871 4.58689 4.73791 4.75575 4.76853 4.79852 4.87077 4.87570 4.99324 4.99412 5.05811 5.19732 5.27844 5.37728 5.38431 5.39971 5.48459 6.18260 6.55809 6.59302 7.05095 7.06947 7.28358 8.73450 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.002240 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.191594 B =12496.102575 C =13542.085476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.518 3.482 6 O -0.587 6.587 7 N -0.715 5.715 8 C 0.137 3.863 9 C -0.108 4.108 10 C 0.106 3.894 11 N -0.654 5.654 12 C 0.559 3.441 13 O -0.570 6.570 14 C -0.117 4.117 15 S -0.153 6.153 16 C -0.546 4.546 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 1.000 3.000 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.260 1.260 24 C 0.101 3.899 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.272 0.728 43 H 0.102 0.898 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.235 1.464 -16.342 30.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.466 6.466 7 N -0.368 5.368 8 C 0.013 3.987 9 C -0.127 4.127 10 C -0.017 4.017 11 N -0.390 5.390 12 C 0.349 3.651 13 O -0.449 6.449 14 C -0.268 4.268 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.185 1.185 24 C -0.021 4.021 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.253 0.747 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.542 -0.358 -15.013 29.629 hybrid contribution 0.333 1.740 -0.170 1.779 sum -25.209 1.381 -15.183 29.461 Atomic orbital electron populations 1.21675 0.92664 1.01958 1.02326 1.20860 0.97596 0.97341 0.92981 1.21894 1.02169 0.92374 1.03274 1.21888 1.02122 0.99996 0.95643 1.21117 0.82156 0.78690 0.87507 1.90688 1.56604 1.50564 1.48790 1.45906 1.06971 1.58344 1.25557 1.21138 0.91141 0.98110 0.88335 1.23082 0.93940 0.96126 0.99544 1.23129 0.87356 0.93012 0.98209 1.49563 1.09385 1.15934 1.64116 1.19647 0.80458 0.89482 0.75558 1.90693 1.66729 1.39689 1.47764 1.23249 0.99826 0.97665 1.06056 1.85624 1.07316 1.15836 1.83830 1.23145 1.02045 0.94249 1.49931 0.89826 1.26166 0.95791 1.03582 0.93704 1.70179 1.08371 1.35480 1.40738 0.84977 0.77213 0.76287 0.79355 1.18651 1.20434 1.18453 1.23512 0.87380 0.94343 0.96828 0.93478 0.89951 0.93431 0.90601 0.89811 0.93034 0.93008 0.89779 0.90650 0.74710 0.90913 0.91020 0.85457 0.90645 0.88263 0.87760 0.87321 0.91950 0.87954 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 7.76 71.98 0.56 -0.98 16 2 C -0.08 -0.83 0.87 -52.93 -0.05 -0.88 16 3 C -0.14 -0.89 8.37 71.98 0.60 -0.28 16 4 C -0.14 -0.84 8.37 71.98 0.60 -0.23 16 5 C 0.52 8.00 6.48 87.66 0.57 8.56 16 6 O -0.59 -14.60 15.98 -3.00 -0.05 -14.65 16 7 N -0.72 -7.08 5.34 -463.07 -2.47 -9.55 16 8 C 0.14 1.52 5.59 86.38 0.48 2.00 16 9 C -0.11 -1.17 4.11 -10.37 -0.04 -1.22 16 10 C 0.11 1.94 8.19 83.18 0.68 2.62 16 11 N -0.65 -16.86 3.69 -857.77 -3.16 -20.03 16 12 C 0.56 21.50 8.10 87.66 0.71 22.21 16 13 O -0.57 -27.68 16.64 -3.02 -0.05 -27.73 16 14 C -0.12 -4.71 5.98 71.24 0.43 -4.29 16 15 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 16 C -0.55 -31.07 9.50 67.95 0.65 -30.42 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.70 5.49 84.86 0.47 1.17 16 19 N -0.91 -55.99 13.22 21.65 0.29 -55.71 16 20 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C 0.10 1.47 8.00 83.26 0.67 2.14 16 25 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 26 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 28 H 0.08 0.27 7.56 -2.39 -0.02 0.25 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.07 0.24 7.56 -2.39 -0.02 0.23 16 34 H 0.42 1.84 7.31 -92.71 -0.68 1.17 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.91 7.81 -2.39 -0.02 0.89 16 37 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.58 8.11 -2.39 -0.02 1.56 16 40 H 0.10 3.85 8.14 -2.40 -0.02 3.83 16 41 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.10 1.26 7.88 -2.39 -0.02 1.24 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -84.67 381.25 2.04 -82.62 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.30 Total: 9.26 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.32 Total: 0.39 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -5.35 Total: -85.28 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.10 Total: -42.38 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -84.67 2.04 -82.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688683310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.691 kcal (2) G-P(sol) polarization free energy of solvation -84.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds