Wall clock time and date at job start Tue Mar 31 2020 10:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46992 * 2 1 4 4 N 1.46491 * 109.47461 * 179.97438 * 3 2 1 5 5 C 1.36950 * 120.00400 * 264.25313 * 4 3 2 6 6 H 1.07998 * 120.00452 * 133.69085 * 5 4 3 7 7 C 1.38996 * 119.99483 * 313.69271 * 5 4 3 8 8 N 1.31407 * 120.00147 * 2.51466 * 7 5 4 9 9 Si 1.86800 * 119.99770 * 182.51470 * 7 5 4 10 10 H 1.48501 * 109.47343 * 90.00083 * 9 7 5 11 11 H 1.48506 * 109.47077 * 209.99844 * 9 7 5 12 12 H 1.48503 * 109.47274 * 330.00071 * 9 7 5 13 13 C 1.34781 * 119.99758 * 84.24579 * 4 3 2 14 14 O 1.21625 * 120.00324 * 5.11501 * 13 4 3 15 15 C 1.47431 * 119.99700 * 185.11318 * 13 4 3 16 16 N 1.34434 * 125.77785 * 355.86836 * 15 13 4 17 17 N 1.28746 * 109.58844 * 179.81353 * 16 15 13 18 18 N 1.40211 * 108.40132 * 0.44972 * 17 16 15 19 19 C 1.40224 * 126.61512 * 179.72448 * 18 17 16 20 20 C 1.38833 * 120.06041 * 39.38616 * 19 18 17 21 21 C 1.38128 * 119.93321 * 179.72632 * 20 19 18 22 22 C 1.38281 * 120.05847 * 0.57761 * 21 20 19 23 23 C 1.38279 * 120.13719 * 359.69895 * 22 21 20 24 24 C 1.38125 * 120.06124 * 359.97438 * 23 22 21 25 25 C 1.35105 * 106.78073 * 359.71965 * 18 17 16 26 26 C 1.50693 * 126.61021 * 179.97438 * 25 18 17 27 27 H 1.09002 * 109.47176 * 300.00166 * 1 2 3 28 28 H 1.08993 * 109.46813 * 60.00402 * 1 2 3 29 29 H 1.09003 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47143 * 240.00299 * 2 1 3 31 31 H 1.09001 * 109.46871 * 119.99301 * 2 1 3 32 32 H 1.08996 * 109.47303 * 59.99490 * 3 2 1 33 33 H 1.09005 * 109.46848 * 300.00128 * 3 2 1 34 34 H 0.96998 * 119.99511 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.03193 * 0.03054 * 20 19 18 36 36 H 1.07990 * 119.96975 * 180.32034 * 21 20 19 37 37 H 1.07998 * 119.93124 * 179.72397 * 22 21 20 38 38 H 1.07998 * 119.96648 * 180.02562 * 23 22 21 39 39 H 1.08008 * 120.02703 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.47439 * 273.94656 * 26 25 18 41 41 H 1.08994 * 109.47356 * 33.94942 * 26 25 18 42 42 H 1.09000 * 109.46960 * 153.95309 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.5616 1.1809 6 1 5.0188 0.9033 1.3930 7 6 3.8162 2.5297 2.1059 8 7 2.7764 3.2978 1.8700 9 14 4.7928 2.7387 3.6845 10 1 5.8827 3.7234 3.4656 11 1 3.8943 3.2263 4.7616 12 1 5.3780 1.4328 4.0812 13 6 4.1793 1.3255 -1.1605 14 8 3.5753 1.3133 -2.2161 15 6 5.6492 1.2121 -1.1509 16 7 6.4366 1.2908 -0.0641 17 7 7.6677 1.1461 -0.4116 18 7 7.7176 0.9707 -1.8019 19 6 8.8687 0.7850 -2.5807 20 6 9.9063 -0.0084 -2.1100 21 6 11.0366 -0.1942 -2.8818 22 6 11.1404 0.4188 -4.1170 23 6 10.1111 1.2142 -4.5859 24 6 8.9754 1.3982 -3.8215 25 6 6.4426 1.0152 -2.2465 26 6 5.9836 0.8753 -3.6750 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 2.5159 3.9730 2.5157 35 1 9.8275 -0.4838 -1.1434 36 1 11.8418 -0.8153 -2.5185 37 1 12.0270 0.2758 -4.7168 38 1 10.1948 1.6913 -5.5512 39 1 8.1716 2.0193 -4.1885 40 1 6.0189 1.8484 -4.1650 41 1 6.6381 0.1799 -4.2005 42 1 4.9617 0.4965 -3.6929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:48 Heat of formation + Delta-G solvation = 96.860961 kcal Electronic energy + Delta-G solvation = -26023.383677 eV Core-core repulsion = 22392.153961 eV Total energy + Delta-G solvation = -3631.229716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85243 -39.33413 -38.24689 -35.13908 -34.45235 -32.74916 -32.08128 -31.16744 -31.09629 -29.50167 -27.54272 -25.75801 -24.52008 -23.75224 -23.14497 -21.93390 -20.84068 -20.20867 -19.21239 -18.11731 -17.02691 -16.36127 -15.95311 -15.38356 -14.90196 -14.61200 -14.57251 -14.23782 -13.83776 -13.76553 -13.60237 -13.56126 -13.13744 -12.94021 -12.74812 -12.56979 -12.27187 -11.78768 -11.65198 -11.45664 -11.35450 -11.25890 -11.14366 -10.91393 -10.83983 -10.54242 -10.29423 -10.18346 -9.91947 -9.65396 -9.29024 -8.97075 -8.81594 -8.57843 -8.37044 -7.33537 -6.19675 -4.01025 0.66914 1.05026 1.84569 2.39602 2.61418 3.28137 3.34399 3.38787 3.44094 4.21485 4.40872 4.51855 4.60102 4.68710 4.70543 4.83172 5.06579 5.07366 5.13338 5.19545 5.39231 5.52351 5.65099 5.70662 5.75947 5.85977 5.90562 5.99834 6.03204 6.16378 6.17092 6.24847 6.30202 6.46703 6.53699 6.58814 6.70440 6.78282 6.89138 7.08892 7.20807 7.52254 7.77502 8.08976 8.57764 8.64598 9.19481 9.52061 9.94262 10.79258 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.004142 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.847889 B = 6758.327438 C = 8025.624132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.417 5.417 5 C -0.316 4.316 6 H 0.107 0.893 7 C 0.045 3.955 8 N -0.876 5.876 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.543 3.457 14 O -0.600 6.600 15 C -0.049 4.049 16 N -0.156 5.156 17 N -0.093 5.093 18 N -0.334 5.334 19 C 0.148 3.852 20 C -0.104 4.104 21 C -0.104 4.104 22 C -0.120 4.120 23 C -0.102 4.102 24 C -0.121 4.121 25 C 0.095 3.905 26 C -0.089 4.089 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -5.667 -10.563 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.013 4.013 4 N -0.132 5.132 5 C -0.445 4.445 6 H 0.124 0.876 7 C -0.159 4.159 8 N -0.514 5.514 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.330 3.670 14 O -0.487 6.487 15 C -0.187 4.187 16 N -0.028 5.028 17 N -0.070 5.070 18 N -0.115 5.115 19 C 0.056 3.944 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.039 4.039 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.512 -5.403 -9.584 15.924 hybrid contribution 0.144 0.230 0.093 0.287 sum 11.656 -5.173 -9.491 15.897 Atomic orbital electron populations 1.21640 0.96516 1.00307 1.01463 1.21857 0.94801 0.99559 1.01103 1.21713 0.80799 0.94355 1.04437 1.43319 1.05022 1.60064 1.04807 1.19880 1.14335 1.16401 0.93914 0.87570 1.25513 0.95984 0.94505 0.99927 1.69689 1.24644 1.20619 1.36494 0.85997 0.79400 0.79114 0.80594 1.20218 1.21218 1.19221 1.17037 0.83218 0.82059 0.84642 1.90579 1.68440 1.58646 1.31013 1.21493 0.96869 1.12744 0.87552 1.75151 0.95952 1.07550 1.24192 1.82140 1.15098 1.23657 0.86136 1.47600 1.04109 1.51202 1.08596 1.17551 0.86353 0.99180 0.91324 1.21095 0.92926 0.97454 1.00937 1.21076 0.97227 0.99600 0.94334 1.21276 0.99017 0.97337 0.96228 1.21026 0.92699 0.98536 0.99810 1.21196 0.99582 0.99804 0.93609 1.21906 0.83270 1.00095 0.98587 1.20683 1.04438 1.02823 0.86778 0.92865 0.93166 0.93770 0.93204 0.92394 0.86127 0.93004 0.92168 0.84679 0.84982 0.85369 0.84917 0.84805 0.89915 0.91442 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.13 -2.80 6.22 -26.73 -0.17 -2.96 16 3 C 0.11 2.67 4.89 -4.05 -0.02 2.65 16 4 N -0.42 -10.95 2.52 -116.03 -0.29 -11.24 16 5 C -0.32 -8.50 7.80 -14.98 -0.12 -8.62 16 6 H 0.11 2.89 6.00 -52.49 -0.32 2.57 16 7 C 0.04 1.19 5.34 -17.45 -0.09 1.10 16 8 N -0.88 -23.84 10.90 55.50 0.60 -23.23 16 9 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 13 C 0.54 13.84 7.58 -12.52 -0.09 13.75 16 14 O -0.60 -15.32 14.33 5.26 0.08 -15.25 16 15 C -0.05 -1.14 6.75 -83.54 -0.56 -1.70 16 16 N -0.16 -3.74 9.11 32.85 0.30 -3.44 16 17 N -0.09 -1.99 13.61 60.35 0.82 -1.16 16 18 N -0.33 -6.04 3.73 -6.70 -0.02 -6.06 16 19 C 0.15 2.09 6.23 -83.58 -0.52 1.57 16 20 C -0.10 -1.27 9.84 -39.40 -0.39 -1.66 16 21 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 22 C -0.12 -0.96 10.04 -39.55 -0.40 -1.35 16 23 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 24 C -0.12 -1.39 8.55 -39.41 -0.34 -1.72 16 25 C 0.10 1.82 6.84 -81.71 -0.56 1.26 16 26 C -0.09 -1.33 8.24 36.00 0.30 -1.03 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.12 3.13 5.40 -51.93 -0.28 2.84 16 33 H 0.05 1.29 7.53 -51.93 -0.39 0.90 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.45 6.54 -52.48 -0.34 1.11 16 40 H 0.08 1.10 7.68 -51.93 -0.40 0.70 16 41 H 0.07 0.81 7.45 -51.93 -0.39 0.43 16 42 H 0.11 1.92 6.31 -51.93 -0.33 1.59 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -31.45 351.54 -7.01 -38.47 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.38 Total: 3.73 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.39 Total: -3.37 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 1.41 Total: -45.14 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.08 Total: -15.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.45 -7.01 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.327 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds