Wall clock time and date at job start Tue Mar 31 2020 10:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46992 * 2 1 4 4 N 1.46491 * 109.47461 * 179.97438 * 3 2 1 5 5 C 1.36950 * 120.00400 * 264.25313 * 4 3 2 6 6 H 1.07998 * 120.00452 * 133.69085 * 5 4 3 7 7 C 1.38996 * 119.99483 * 313.69271 * 5 4 3 8 8 N 1.31407 * 120.00147 * 2.51466 * 7 5 4 9 9 Si 1.86800 * 119.99770 * 182.51470 * 7 5 4 10 10 H 1.48501 * 109.47343 * 90.00083 * 9 7 5 11 11 H 1.48506 * 109.47077 * 209.99844 * 9 7 5 12 12 H 1.48503 * 109.47274 * 330.00071 * 9 7 5 13 13 C 1.34781 * 119.99758 * 84.24579 * 4 3 2 14 14 O 1.21625 * 120.00324 * 5.11501 * 13 4 3 15 15 C 1.47431 * 119.99700 * 185.11318 * 13 4 3 16 16 N 1.34434 * 125.77785 * 355.86836 * 15 13 4 17 17 N 1.28746 * 109.58844 * 179.81353 * 16 15 13 18 18 N 1.40211 * 108.40132 * 0.44972 * 17 16 15 19 19 C 1.40224 * 126.61512 * 179.72448 * 18 17 16 20 20 C 1.38833 * 120.06041 * 39.38616 * 19 18 17 21 21 C 1.38128 * 119.93321 * 179.72632 * 20 19 18 22 22 C 1.38281 * 120.05847 * 0.57761 * 21 20 19 23 23 C 1.38279 * 120.13719 * 359.69895 * 22 21 20 24 24 C 1.38125 * 120.06124 * 359.97438 * 23 22 21 25 25 C 1.35105 * 106.78073 * 359.71965 * 18 17 16 26 26 C 1.50693 * 126.61021 * 179.97438 * 25 18 17 27 27 H 1.09002 * 109.47176 * 300.00166 * 1 2 3 28 28 H 1.08993 * 109.46813 * 60.00402 * 1 2 3 29 29 H 1.09003 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47143 * 240.00299 * 2 1 3 31 31 H 1.09001 * 109.46871 * 119.99301 * 2 1 3 32 32 H 1.08996 * 109.47303 * 59.99490 * 3 2 1 33 33 H 1.09005 * 109.46848 * 300.00128 * 3 2 1 34 34 H 0.96998 * 119.99511 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.03193 * 0.03054 * 20 19 18 36 36 H 1.07990 * 119.96975 * 180.32034 * 21 20 19 37 37 H 1.07998 * 119.93124 * 179.72397 * 22 21 20 38 38 H 1.07998 * 119.96648 * 180.02562 * 23 22 21 39 39 H 1.08008 * 120.02703 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.47439 * 273.94656 * 26 25 18 41 41 H 1.08994 * 109.47356 * 33.94942 * 26 25 18 42 42 H 1.09000 * 109.46960 * 153.95309 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.5616 1.1809 6 1 5.0188 0.9033 1.3930 7 6 3.8162 2.5297 2.1059 8 7 2.7764 3.2978 1.8700 9 14 4.7928 2.7387 3.6845 10 1 5.8827 3.7234 3.4656 11 1 3.8943 3.2263 4.7616 12 1 5.3780 1.4328 4.0812 13 6 4.1793 1.3255 -1.1605 14 8 3.5753 1.3133 -2.2161 15 6 5.6492 1.2121 -1.1509 16 7 6.4366 1.2908 -0.0641 17 7 7.6677 1.1461 -0.4116 18 7 7.7176 0.9707 -1.8019 19 6 8.8687 0.7850 -2.5807 20 6 9.9063 -0.0084 -2.1100 21 6 11.0366 -0.1942 -2.8818 22 6 11.1404 0.4188 -4.1170 23 6 10.1111 1.2142 -4.5859 24 6 8.9754 1.3982 -3.8215 25 6 6.4426 1.0152 -2.2465 26 6 5.9836 0.8753 -3.6750 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 2.5159 3.9730 2.5157 35 1 9.8275 -0.4838 -1.1434 36 1 11.8418 -0.8153 -2.5185 37 1 12.0270 0.2758 -4.7168 38 1 10.1948 1.6913 -5.5512 39 1 8.1716 2.0193 -4.1885 40 1 6.0189 1.8484 -4.1650 41 1 6.6381 0.1799 -4.2005 42 1 4.9617 0.4965 -3.6929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:47 Heat of formation + Delta-G solvation = 78.810244 kcal Electronic energy + Delta-G solvation = -26024.166415 eV Core-core repulsion = 22392.153961 eV Total energy + Delta-G solvation = -3632.012454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.37385 -40.45276 -39.95050 -37.06173 -35.76547 -34.52301 -33.42984 -33.08169 -31.96310 -30.63768 -28.99204 -27.56651 -26.39689 -24.95003 -24.25698 -23.29269 -22.29432 -21.61678 -21.07550 -19.68378 -18.48989 -17.47575 -17.35175 -17.04943 -16.53913 -16.29436 -15.87244 -15.51309 -15.45338 -15.29592 -14.97003 -14.77103 -14.57386 -14.20518 -13.97944 -13.96206 -13.64796 -13.29506 -13.22988 -13.02076 -12.91619 -12.62416 -12.58455 -12.50526 -12.30574 -12.15071 -11.99447 -11.70011 -11.59739 -11.47913 -10.93302 -10.53914 -10.20046 -10.06119 -9.63608 -9.32930 -8.21267 -6.08171 -0.41175 0.28283 0.58494 0.85025 1.08382 1.41160 1.45792 1.54699 2.31166 2.51085 2.62121 2.86999 3.10545 3.35716 3.61973 3.73715 3.84418 3.98046 4.06896 4.18019 4.23739 4.35643 4.36964 4.46758 4.50576 4.55626 4.60849 4.72472 4.74348 4.89478 4.97332 5.02012 5.12762 5.13297 5.28942 5.30343 5.32911 5.41700 5.44970 5.56161 5.63451 5.75107 5.96914 6.12182 6.54391 6.98159 7.18406 7.54649 7.94645 8.77674 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.004142 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.847889 B = 6758.327438 C = 8025.624132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.112 3.888 4 N -0.435 5.435 5 C -0.323 4.323 6 H 0.098 0.902 7 C 0.006 3.994 8 N -0.901 5.901 9 Si 0.978 3.022 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.264 1.264 13 C 0.537 3.463 14 O -0.611 6.611 15 C -0.093 4.093 16 N -0.192 5.192 17 N -0.112 5.112 18 N -0.314 5.314 19 C 0.096 3.904 20 C -0.118 4.118 21 C -0.100 4.100 22 C -0.101 4.101 23 C -0.095 4.095 24 C -0.124 4.124 25 C 0.113 3.887 26 C -0.082 4.082 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.270 0.730 35 H 0.120 0.880 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.711 -6.374 -12.828 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C -0.011 4.011 4 N -0.151 5.151 5 C -0.453 4.453 6 H 0.115 0.885 7 C -0.196 4.196 8 N -0.541 5.541 9 Si 0.803 3.197 10 H -0.210 1.210 11 H -0.198 1.198 12 H -0.188 1.188 13 C 0.325 3.675 14 O -0.498 6.498 15 C -0.233 4.233 16 N -0.063 5.063 17 N -0.089 5.089 18 N -0.095 5.095 19 C 0.007 3.993 20 C -0.138 4.138 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.144 4.144 25 C -0.023 4.023 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.186 0.814 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.067 -6.124 -11.848 19.385 hybrid contribution -0.384 0.406 0.545 0.780 sum 13.683 -5.718 -11.304 18.646 Atomic orbital electron populations 1.21586 0.93310 1.02286 1.01892 1.21745 0.97522 0.96830 1.00207 1.21669 0.80351 0.96318 1.02720 1.43536 1.05691 1.60852 1.05027 1.19910 1.14306 1.16665 0.94370 0.88452 1.26183 0.96723 0.94166 1.02499 1.69791 1.25589 1.21160 1.37514 0.85158 0.78027 0.78831 0.77727 1.20985 1.19801 1.18822 1.17382 0.84441 0.81291 0.84347 1.90536 1.69170 1.59020 1.31062 1.21408 0.96219 1.16404 0.89219 1.75067 0.96850 1.08978 1.25438 1.81978 1.14062 1.24547 0.88362 1.47740 1.05115 1.48889 1.07726 1.18062 0.85979 1.02665 0.92630 1.21184 0.93785 0.97753 1.01067 1.21438 0.96473 0.99494 0.94428 1.21807 0.99750 0.94866 0.95488 1.21474 0.91348 0.97876 1.00591 1.21382 1.00964 0.99517 0.92578 1.22377 0.83148 0.97506 0.99315 1.20792 1.03863 1.04806 0.84588 0.92583 0.92602 0.90978 0.94052 0.93179 0.87698 0.94531 0.91976 0.86173 0.82183 0.81387 0.81407 0.84485 0.87742 0.87933 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.91 71.99 0.71 -3.74 16 2 C -0.12 -5.31 6.22 30.60 0.19 -5.12 16 3 C 0.11 5.71 4.89 86.38 0.42 6.13 16 4 N -0.44 -24.01 2.52 -639.25 -1.61 -25.62 16 5 C -0.32 -18.22 7.80 84.08 0.66 -17.56 16 6 H 0.10 5.59 6.00 -2.91 -0.02 5.58 16 7 C 0.01 0.31 5.34 84.94 0.45 0.76 16 8 N -0.90 -50.67 10.90 21.67 0.24 -50.43 16 9 Si 0.98 44.92 29.55 68.60 2.03 46.94 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.54 28.69 7.58 86.66 0.66 29.35 16 14 O -0.61 -32.34 14.33 -4.11 -0.06 -32.40 16 15 C -0.09 -4.55 6.75 40.81 0.28 -4.28 16 16 N -0.19 -9.66 9.11 -49.99 -0.46 -10.11 16 17 N -0.11 -4.98 13.61 37.02 0.50 -4.48 16 18 N -0.31 -11.50 3.73 -175.11 -0.65 -12.15 16 19 C 0.10 2.63 6.23 38.08 0.24 2.87 16 20 C -0.12 -2.73 9.84 22.39 0.22 -2.51 16 21 C -0.10 -1.44 10.04 22.25 0.22 -1.22 16 22 C -0.10 -1.06 10.04 22.29 0.22 -0.84 16 23 C -0.09 -1.17 10.04 22.25 0.22 -0.95 16 24 C -0.12 -2.48 8.55 22.38 0.19 -2.29 16 25 C 0.11 4.37 6.84 41.69 0.29 4.65 16 26 C -0.08 -2.38 8.24 71.23 0.59 -1.79 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.11 5.69 5.40 -2.39 -0.01 5.67 16 33 H 0.04 1.91 7.53 -2.38 -0.02 1.90 16 34 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.16 1.39 8.06 -2.92 -0.02 1.36 16 37 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.14 2.60 6.54 -2.91 -0.02 2.58 16 40 H 0.10 2.59 7.68 -2.38 -0.02 2.57 16 41 H 0.10 2.22 7.45 -2.39 -0.02 2.21 16 42 H 0.10 3.21 6.31 -2.39 -0.02 3.19 16 Total: -1.00 -73.56 351.54 6.59 -66.97 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.04 Total: 17.81 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.56 Total: 3.46 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -1.98 Total: -102.79 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.06 Total: -32.40 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -73.56 6.59 -66.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.784 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds