Wall clock time and date at job start Tue Mar 31 2020 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 N 1.46507 * 109.46918 * 179.97438 * 3 2 1 5 5 C 1.37097 * 119.99941 * 269.71849 * 4 3 2 6 6 H 1.08005 * 119.99743 * 145.00191 * 5 4 3 7 7 C 1.38952 * 120.00222 * 325.00809 * 5 4 3 8 8 N 1.31406 * 119.99875 * 337.82365 * 7 5 4 9 9 Si 1.86799 * 119.99851 * 157.82417 * 7 5 4 10 10 H 1.48501 * 109.47084 * 59.99881 * 9 7 5 11 11 H 1.48502 * 109.47035 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47294 * 299.99963 * 9 7 5 13 13 C 1.34771 * 119.99957 * 90.00403 * 4 3 2 14 14 O 1.21294 * 119.99986 * 354.70511 * 13 4 3 15 15 C 1.50704 * 120.00331 * 174.71447 * 13 4 3 16 16 N 1.46495 * 109.47349 * 174.51905 * 15 13 4 17 17 C 1.34524 * 126.74042 * 124.99718 * 16 15 13 18 18 N 1.30682 * 108.29455 * 179.97438 * 17 16 15 19 19 C 1.33976 * 109.77941 * 0.02562 * 18 17 16 20 20 C 1.48409 * 125.65117 * 180.02562 * 19 18 17 21 21 C 1.39329 * 120.12001 * 179.70416 * 20 19 18 22 22 C 1.38019 * 119.87720 * 179.69518 * 21 20 19 23 23 C 1.38319 * 120.11911 * 0.60062 * 22 21 20 24 24 C 1.38315 * 120.24335 * 359.67141 * 23 22 21 25 25 C 1.38023 * 120.12118 * 0.02562 * 24 23 22 26 26 N 1.31501 * 108.69960 * 359.75504 * 19 18 17 27 27 H 1.08998 * 109.47667 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47536 * 300.00088 * 1 2 3 29 29 H 1.09004 * 109.47229 * 60.00391 * 1 2 3 30 30 H 1.08995 * 109.47347 * 239.99614 * 2 1 3 31 31 H 1.09004 * 109.47229 * 119.99609 * 2 1 3 32 32 H 1.08998 * 109.47435 * 60.00133 * 3 2 1 33 33 H 1.08996 * 109.47043 * 299.99706 * 3 2 1 34 34 H 0.96998 * 119.99857 * 185.08954 * 8 7 5 35 35 H 1.09001 * 109.46603 * 294.52255 * 15 13 4 36 36 H 1.08997 * 109.46926 * 54.51382 * 15 13 4 37 37 H 1.07998 * 125.85150 * 359.97438 * 17 16 15 38 38 H 1.08007 * 120.06076 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.94208 * 180.29233 * 22 21 20 40 40 H 1.08004 * 119.88019 * 179.69849 * 23 22 21 41 41 H 1.08003 * 119.94110 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.06274 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1899 1.4484 1.1882 6 1 5.1234 0.9123 1.2758 7 6 3.6832 2.1440 2.2791 8 7 2.8270 3.1235 2.0937 9 14 4.2190 1.6868 4.0092 10 1 5.6899 1.8502 4.1313 11 1 3.5399 2.5732 4.9882 12 1 3.8535 0.2738 4.2834 13 6 4.1793 1.4423 -1.1663 14 8 3.5771 1.3453 -2.2147 15 6 5.6816 1.5625 -1.1685 16 7 6.1819 1.4066 -2.5365 17 6 6.9659 2.2680 -3.2096 18 7 7.1945 1.7726 -4.3971 19 6 6.5724 0.5928 -4.5236 20 6 6.5967 -0.2731 -5.7287 21 6 5.9104 -1.4856 -5.7324 22 6 5.9312 -2.2840 -6.8580 23 6 6.6419 -1.8882 -7.9767 24 6 7.3296 -0.6881 -7.9765 25 6 7.3105 0.1210 -6.8585 26 7 5.9414 0.3264 -3.4011 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.5298 3.6571 2.8472 35 1 5.9682 2.5422 -0.7861 36 1 6.1091 0.7858 -0.5345 37 1 7.3419 3.2078 -2.8332 38 1 5.3594 -1.7980 -4.8576 39 1 5.3956 -3.2219 -6.8637 40 1 6.6595 -2.5182 -8.8537 41 1 7.8826 -0.3836 -8.8528 42 1 7.8475 1.0580 -6.8595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125262817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:04 Heat of formation + Delta-G solvation = 82.012301 kcal Electronic energy + Delta-G solvation = -25291.657026 eV Core-core repulsion = 21659.783423 eV Total energy + Delta-G solvation = -3631.873603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66924 -38.92697 -38.61938 -35.34748 -33.70790 -32.86075 -31.72342 -31.46336 -30.88430 -30.07999 -27.58370 -25.76758 -24.50725 -23.25201 -22.76111 -21.37074 -20.74229 -20.24075 -19.31167 -17.49561 -17.11242 -16.44803 -15.90500 -15.23470 -15.06434 -14.99560 -14.74617 -14.34883 -14.18122 -13.89819 -13.84937 -13.42034 -13.31856 -12.93648 -12.77893 -12.57748 -12.10080 -11.69793 -11.53992 -11.40562 -11.29387 -11.24709 -11.05179 -11.02957 -10.77147 -10.54020 -10.39539 -9.97005 -9.83564 -9.68556 -9.46890 -9.25679 -8.89161 -8.65789 -8.21438 -7.68131 -6.56771 -4.26655 1.05898 1.46515 2.14139 2.65855 2.98591 3.09686 3.11571 3.23729 3.66098 3.92509 4.06959 4.22200 4.46014 4.77372 4.83609 4.96938 5.02861 5.15373 5.18744 5.52169 5.54970 5.70450 5.74032 5.77225 5.81828 5.87089 5.91131 6.10447 6.12607 6.29477 6.42457 6.50752 6.52352 6.61572 6.63254 6.65294 6.75406 6.77190 6.99201 7.01497 7.14373 7.19973 7.37788 7.72893 8.17419 8.40225 8.87568 9.28799 9.73359 10.43365 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.003206 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.282089 B = 8731.099215 C = 9636.260784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.115 3.885 4 N -0.430 5.430 5 C -0.356 4.356 6 H 0.090 0.910 7 C 0.051 3.949 8 N -0.853 5.853 9 Si 0.916 3.084 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.455 3.545 14 O -0.582 6.582 15 C 0.124 3.876 16 N -0.348 5.348 17 C 0.250 3.750 18 N -0.542 5.542 19 C 0.234 3.766 20 C 0.003 3.997 21 C -0.087 4.087 22 C -0.125 4.125 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.082 4.082 26 N -0.268 5.268 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.274 0.726 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.218 0.782 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.317 -4.548 -8.418 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.149 5.149 5 C -0.484 4.484 6 H 0.108 0.892 7 C -0.157 4.157 8 N -0.488 5.488 9 Si 0.742 3.258 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.242 3.758 14 O -0.466 6.466 15 C -0.001 4.001 16 N -0.138 5.138 17 C -0.047 4.047 18 N -0.270 5.270 19 C -0.045 4.045 20 C 0.000 4.000 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.134 4.134 24 C -0.146 4.146 25 C -0.103 4.103 26 N -0.097 5.097 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.125 0.875 37 H 0.234 0.766 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.569 -4.915 -8.755 11.481 hybrid contribution 0.210 0.233 1.455 1.488 sum 5.779 -4.682 -7.300 10.422 Atomic orbital electron populations 1.21654 0.96562 1.00514 1.01349 1.21801 0.94692 0.99272 1.01394 1.21510 0.80805 0.94923 1.03598 1.43412 1.04986 1.62503 1.03978 1.19409 1.08580 1.32748 0.87653 0.89214 1.25368 0.96188 0.93736 1.00393 1.69822 1.31041 1.15237 1.32691 0.86176 0.79075 0.79014 0.81554 1.19576 1.20750 1.19591 1.20126 0.88248 0.82725 0.84730 1.90628 1.69315 1.55054 1.31562 1.21644 0.96238 1.05417 0.76752 1.50128 1.35988 1.14333 1.13322 1.25883 0.93114 0.97391 0.88265 1.70375 1.27971 1.10462 1.18166 1.22194 0.96136 0.92592 0.93592 1.17491 0.99478 0.92961 0.90062 1.21280 0.97546 0.93015 0.98840 1.21055 1.00065 0.99997 0.93181 1.21220 0.97328 0.96664 0.98206 1.21057 1.00457 0.94911 0.98157 1.21208 0.97497 0.99855 0.91700 1.78303 1.21358 1.08719 1.01278 0.93573 0.92982 0.93180 0.92889 0.92285 0.87338 0.92943 0.91522 0.85638 0.87469 0.76583 0.85085 0.85744 0.86103 0.85791 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.15 0.37 -2.05 16 2 C -0.13 -2.72 6.26 -26.74 -0.17 -2.89 16 3 C 0.11 2.66 4.97 -4.04 -0.02 2.64 16 4 N -0.43 -10.20 2.54 -114.81 -0.29 -10.49 16 5 C -0.36 -8.23 8.65 -14.93 -0.13 -8.36 16 6 H 0.09 1.93 6.88 -52.48 -0.36 1.57 16 7 C 0.05 1.18 4.96 -17.47 -0.09 1.09 16 8 N -0.85 -20.81 11.33 55.50 0.63 -20.18 16 9 Si 0.92 17.94 29.61 -169.99 -5.03 12.90 16 10 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 C 0.46 10.62 7.63 -10.99 -0.08 10.54 16 14 O -0.58 -15.41 15.51 5.55 0.09 -15.32 16 15 C 0.12 2.30 5.92 -5.19 -0.03 2.27 16 16 N -0.35 -6.55 3.37 -63.83 -0.21 -6.77 16 17 C 0.25 4.03 12.61 -90.69 -1.14 2.88 16 18 N -0.54 -9.66 10.82 -12.38 -0.13 -9.80 16 19 C 0.23 4.44 7.78 -156.62 -1.22 3.23 16 20 C 0.00 0.04 5.88 -104.90 -0.62 -0.57 16 21 C -0.09 -1.30 9.68 -39.26 -0.38 -1.68 16 22 C -0.12 -1.49 10.03 -39.63 -0.40 -1.89 16 23 C -0.12 -1.23 10.04 -39.52 -0.40 -1.62 16 24 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 25 C -0.08 -1.13 9.69 -39.26 -0.38 -1.51 16 26 N -0.27 -5.58 11.58 32.10 0.37 -5.21 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.11 2.64 5.36 -51.93 -0.28 2.36 16 33 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 34 H 0.27 6.34 8.32 -40.82 -0.34 6.00 16 35 H 0.13 1.99 8.09 -51.93 -0.42 1.57 16 36 H 0.11 1.85 7.25 -51.93 -0.38 1.48 16 37 H 0.22 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.13 2.07 7.83 -52.48 -0.41 1.66 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.13 1.76 7.84 -52.49 -0.41 1.35 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -30.96 362.12 -9.80 -40.76 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.59 Total: 8.40 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -5.08 Total: 0.24 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.36 Total: -52.44 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.96 -9.80 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125262817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.775 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds