Wall clock time and date at job start Tue Mar 31 2020 10:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47437 * 2 1 4 4 N 1.46494 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99847 * 264.52165 * 4 3 2 6 6 H 1.08004 * 120.00252 * 138.94691 * 5 4 3 7 7 C 1.38950 * 120.00252 * 318.94524 * 5 4 3 8 8 N 1.31416 * 119.99743 * 341.77391 * 7 5 4 9 9 Si 1.86797 * 120.00586 * 161.77673 * 7 5 4 10 10 H 1.48502 * 109.47036 * 89.99645 * 9 7 5 11 11 H 1.48499 * 109.47522 * 210.00211 * 9 7 5 12 12 H 1.48504 * 109.47137 * 330.00005 * 9 7 5 13 13 C 1.34773 * 120.00425 * 84.79462 * 4 3 2 14 14 O 1.21294 * 120.00415 * 179.72848 * 13 4 3 15 15 C 1.50705 * 119.99409 * 359.72685 * 13 4 3 16 16 N 1.46504 * 109.46674 * 180.02562 * 15 13 4 17 17 C 1.35213 * 125.75453 * 124.71763 * 16 15 13 18 18 C 1.36481 * 106.04824 * 179.84549 * 17 16 15 19 19 C 1.48440 * 126.90832 * 180.14766 * 18 17 16 20 20 C 1.39313 * 120.11717 * 0.02562 * 19 18 17 21 21 C 1.38030 * 119.87723 * 179.75077 * 20 19 18 22 22 C 1.38316 * 120.11993 * 0.55421 * 21 20 19 23 23 C 1.38325 * 120.23952 * 359.69855 * 22 21 20 24 24 C 1.38022 * 120.11731 * 0.02562 * 23 22 21 25 25 N 1.34508 * 106.18631 * 0.40327 * 18 17 16 26 26 N 1.28610 * 108.78273 * 359.74108 * 25 18 17 27 27 H 1.09005 * 109.47166 * 59.99397 * 1 2 3 28 28 H 1.08993 * 109.47716 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46895 * 299.99896 * 1 2 3 30 30 H 1.09005 * 109.46895 * 240.00104 * 2 1 3 31 31 H 1.08997 * 109.46945 * 120.00722 * 2 1 3 32 32 H 1.09005 * 109.46993 * 60.00164 * 3 2 1 33 33 H 1.09003 * 109.47008 * 300.00133 * 3 2 1 34 34 H 0.96999 * 119.99891 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47177 * 299.99327 * 15 13 4 36 36 H 1.08990 * 109.47497 * 60.00381 * 15 13 4 37 37 H 1.08004 * 126.97264 * 359.97438 * 17 16 15 38 38 H 1.07997 * 120.06285 * 0.02710 * 20 19 18 39 39 H 1.08001 * 119.94085 * 180.29878 * 21 20 19 40 40 H 1.08003 * 119.88237 * 179.72391 * 22 21 20 41 41 H 1.08000 * 119.94202 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.06307 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5556 1.1810 6 1 5.0719 0.9550 1.3537 7 6 3.7530 2.4429 2.1564 8 7 2.9269 3.4141 1.8380 9 14 4.3382 2.2555 3.9204 10 1 5.5822 3.0426 4.1155 11 1 3.2881 2.7517 4.8458 12 1 4.6096 0.8229 4.2023 13 6 4.1785 1.3367 -1.1632 14 8 5.3914 1.3416 -1.1642 15 6 3.4244 1.2123 -2.4621 16 7 4.3760 1.1121 -3.5715 17 6 4.4174 0.1204 -4.4897 18 6 5.4477 0.4276 -5.3305 19 6 5.8987 -0.3529 -6.5099 20 6 5.2482 -1.5351 -6.8562 21 6 5.6686 -2.2542 -7.9569 22 6 6.7407 -1.8090 -8.7087 23 6 7.3935 -0.6385 -8.3663 24 6 6.9779 0.0913 -7.2710 25 7 5.9757 1.5767 -4.8724 26 7 5.3165 1.9499 -3.8330 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.6208 4.0333 2.5190 35 1 2.8015 0.3182 -2.4364 36 1 2.7941 2.0904 -2.6019 37 1 3.7660 -0.7391 -4.5474 38 1 4.4138 -1.8860 -6.2672 39 1 5.1619 -3.1684 -8.2291 40 1 7.0692 -2.3770 -9.5666 41 1 8.2299 -0.2951 -8.9570 42 1 7.4880 1.0052 -7.0046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134791090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:02 Heat of formation + Delta-G solvation = 92.745286 kcal Electronic energy + Delta-G solvation = -25211.158643 eV Core-core repulsion = 21579.750457 eV Total energy + Delta-G solvation = -3631.408186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.91266 -39.07609 -38.75838 -35.56643 -34.24040 -32.94023 -32.41021 -31.38965 -30.99554 -29.31147 -28.32048 -25.96824 -24.58794 -23.62435 -22.98913 -21.45467 -21.09457 -20.97536 -19.26731 -17.45981 -17.15870 -16.69276 -16.29503 -15.74941 -15.42441 -14.94515 -14.90828 -14.44400 -14.37909 -14.09697 -13.85509 -13.52959 -13.44634 -13.11309 -13.00157 -12.66052 -12.19235 -11.79302 -11.62347 -11.59248 -11.45380 -11.24381 -11.09630 -11.06908 -10.84759 -10.58673 -10.45677 -10.44099 -10.26969 -10.12705 -9.63378 -9.06861 -9.00776 -8.63889 -8.17032 -7.61409 -6.46516 -4.16086 0.96716 1.34902 2.00332 2.56722 2.90688 3.09845 3.19677 3.23910 3.57109 3.91752 4.01913 4.31650 4.49353 4.71265 4.79759 4.88779 4.90777 4.97825 5.07785 5.19807 5.23306 5.27736 5.37555 5.44175 5.53075 5.57071 5.79588 5.80764 5.87840 5.98278 6.05485 6.12872 6.15294 6.25318 6.39436 6.41744 6.51155 6.59198 6.68835 6.78140 6.90505 7.02790 7.45880 8.09715 8.31291 8.84489 8.99731 9.17197 9.75136 10.58538 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.002909 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.301660 B = 9623.593623 C =10363.542728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.102 3.898 4 N -0.431 5.431 5 C -0.311 4.311 6 H 0.090 0.910 7 C 0.042 3.958 8 N -0.867 5.867 9 Si 0.921 3.079 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.447 3.553 14 O -0.549 6.549 15 C 0.093 3.907 16 N -0.263 5.263 17 C -0.043 4.043 18 C 0.003 3.997 19 C 0.008 3.992 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.095 4.095 25 N -0.270 5.270 26 N -0.037 5.037 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.270 0.730 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.188 0.812 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.729 -10.079 -14.145 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.022 4.022 4 N -0.151 5.151 5 C -0.438 4.438 6 H 0.108 0.892 7 C -0.163 4.163 8 N -0.504 5.504 9 Si 0.747 3.253 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.232 3.768 14 O -0.430 6.430 15 C -0.032 4.032 16 N -0.054 5.054 17 C -0.194 4.194 18 C -0.134 4.134 19 C 0.006 3.994 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.114 4.114 25 N -0.137 5.137 26 N -0.017 5.017 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.205 0.795 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.559 -8.554 -13.527 16.395 hybrid contribution -0.634 -0.987 0.749 1.392 sum -4.193 -9.541 -12.777 16.489 Atomic orbital electron populations 1.21691 0.95991 1.00941 1.01793 1.22011 0.95196 0.98994 1.01829 1.21667 0.82014 0.94486 1.04015 1.43382 1.04471 1.62998 1.04246 1.19368 1.12358 1.21860 0.90262 0.89226 1.25454 0.96799 0.93310 1.00773 1.69912 1.33001 1.13144 1.34338 0.86033 0.78602 0.79009 0.81699 1.20086 1.20687 1.19284 1.20038 0.88473 0.84168 0.84153 1.90661 1.13204 1.53444 1.85662 1.22261 0.89881 1.05984 0.85082 1.46850 1.22624 1.15749 1.20201 1.23421 1.04434 0.97739 0.93827 1.20298 0.97479 0.96569 0.99005 1.17714 0.95919 0.93539 0.92195 1.21086 1.00031 0.94246 0.97537 1.21005 0.97444 0.99878 0.95445 1.21184 0.96394 0.96761 0.99929 1.21106 1.00082 0.95340 0.97228 1.21276 0.95705 1.00105 0.94292 1.75293 1.21836 1.11294 1.05268 1.78425 0.97488 1.15696 1.10049 0.93080 0.93236 0.92503 0.93463 0.91238 0.87192 0.93362 0.91997 0.86303 0.86324 0.79492 0.85883 0.85897 0.86196 0.85877 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.14 -2.16 6.17 -26.73 -0.16 -2.33 16 3 C 0.10 1.95 4.69 -4.05 -0.02 1.93 16 4 N -0.43 -10.13 2.50 -114.81 -0.29 -10.42 16 5 C -0.31 -8.23 8.84 -14.93 -0.13 -8.36 16 6 H 0.09 2.51 7.82 -52.48 -0.41 2.10 16 7 C 0.04 1.07 4.95 -17.47 -0.09 0.98 16 8 N -0.87 -22.41 11.61 55.50 0.64 -21.76 16 9 Si 0.92 19.98 29.59 -169.99 -5.03 14.95 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.45 10.38 7.60 -10.98 -0.08 10.29 16 14 O -0.55 -15.40 15.58 5.55 0.09 -15.32 16 15 C 0.09 1.58 5.54 -5.19 -0.03 1.55 16 16 N -0.26 -4.83 3.19 -62.17 -0.20 -5.03 16 17 C -0.04 -0.65 10.96 -16.70 -0.18 -0.83 16 18 C 0.00 0.05 6.99 -83.12 -0.58 -0.53 16 19 C 0.01 0.12 5.88 -104.89 -0.62 -0.50 16 20 C -0.11 -1.20 9.58 -39.26 -0.38 -1.58 16 21 C -0.12 -1.12 10.03 -39.63 -0.40 -1.52 16 22 C -0.12 -1.15 10.04 -39.52 -0.40 -1.55 16 23 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 24 C -0.09 -1.23 9.71 -39.26 -0.38 -1.62 16 25 N -0.27 -5.46 12.16 33.06 0.40 -5.06 16 26 N -0.04 -0.80 12.09 60.35 0.73 -0.07 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.65 6.58 -51.93 -0.34 0.30 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.11 2.38 5.76 -51.93 -0.30 2.08 16 33 H 0.05 0.81 6.66 -51.93 -0.35 0.47 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.12 1.52 6.45 -51.93 -0.33 1.19 16 36 H 0.12 1.81 7.40 -51.93 -0.38 1.43 16 37 H 0.19 1.89 7.41 -52.48 -0.39 1.50 16 38 H 0.12 1.07 7.12 -52.49 -0.37 0.70 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.78 7.90 -52.49 -0.41 1.36 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -33.83 357.14 -7.13 -40.97 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.39 Total: 3.45 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.48 Total: -7.10 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 1.29 Total: -42.33 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.83 -7.13 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134791090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.715 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds