Wall clock time and date at job start Tue Mar 31 2020 10:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47437 * 2 1 4 4 N 1.46494 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99847 * 264.52165 * 4 3 2 6 6 H 1.08004 * 120.00252 * 138.94691 * 5 4 3 7 7 C 1.38950 * 120.00252 * 318.94524 * 5 4 3 8 8 N 1.31416 * 119.99743 * 341.77391 * 7 5 4 9 9 Si 1.86797 * 120.00586 * 161.77673 * 7 5 4 10 10 H 1.48502 * 109.47036 * 89.99645 * 9 7 5 11 11 H 1.48499 * 109.47522 * 210.00211 * 9 7 5 12 12 H 1.48504 * 109.47137 * 330.00005 * 9 7 5 13 13 C 1.34773 * 120.00425 * 84.79462 * 4 3 2 14 14 O 1.21294 * 120.00415 * 179.72848 * 13 4 3 15 15 C 1.50705 * 119.99409 * 359.72685 * 13 4 3 16 16 N 1.46504 * 109.46674 * 180.02562 * 15 13 4 17 17 C 1.35213 * 125.75453 * 124.71763 * 16 15 13 18 18 C 1.36481 * 106.04824 * 179.84549 * 17 16 15 19 19 C 1.48440 * 126.90832 * 180.14766 * 18 17 16 20 20 C 1.39313 * 120.11717 * 0.02562 * 19 18 17 21 21 C 1.38030 * 119.87723 * 179.75077 * 20 19 18 22 22 C 1.38316 * 120.11993 * 0.55421 * 21 20 19 23 23 C 1.38325 * 120.23952 * 359.69855 * 22 21 20 24 24 C 1.38022 * 120.11731 * 0.02562 * 23 22 21 25 25 N 1.34508 * 106.18631 * 0.40327 * 18 17 16 26 26 N 1.28610 * 108.78273 * 359.74108 * 25 18 17 27 27 H 1.09005 * 109.47166 * 59.99397 * 1 2 3 28 28 H 1.08993 * 109.47716 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46895 * 299.99896 * 1 2 3 30 30 H 1.09005 * 109.46895 * 240.00104 * 2 1 3 31 31 H 1.08997 * 109.46945 * 120.00722 * 2 1 3 32 32 H 1.09005 * 109.46993 * 60.00164 * 3 2 1 33 33 H 1.09003 * 109.47008 * 300.00133 * 3 2 1 34 34 H 0.96999 * 119.99891 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47177 * 299.99327 * 15 13 4 36 36 H 1.08990 * 109.47497 * 60.00381 * 15 13 4 37 37 H 1.08004 * 126.97264 * 359.97438 * 17 16 15 38 38 H 1.07997 * 120.06285 * 0.02710 * 20 19 18 39 39 H 1.08001 * 119.94085 * 180.29878 * 21 20 19 40 40 H 1.08003 * 119.88237 * 179.72391 * 22 21 20 41 41 H 1.08000 * 119.94202 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.06307 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5556 1.1810 6 1 5.0719 0.9550 1.3537 7 6 3.7530 2.4429 2.1564 8 7 2.9269 3.4141 1.8380 9 14 4.3382 2.2555 3.9204 10 1 5.5822 3.0426 4.1155 11 1 3.2881 2.7517 4.8458 12 1 4.6096 0.8229 4.2023 13 6 4.1785 1.3367 -1.1632 14 8 5.3914 1.3416 -1.1642 15 6 3.4244 1.2123 -2.4621 16 7 4.3760 1.1121 -3.5715 17 6 4.4174 0.1204 -4.4897 18 6 5.4477 0.4276 -5.3305 19 6 5.8987 -0.3529 -6.5099 20 6 5.2482 -1.5351 -6.8562 21 6 5.6686 -2.2542 -7.9569 22 6 6.7407 -1.8090 -8.7087 23 6 7.3935 -0.6385 -8.3663 24 6 6.9779 0.0913 -7.2710 25 7 5.9757 1.5767 -4.8724 26 7 5.3165 1.9499 -3.8330 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.6208 4.0333 2.5190 35 1 2.8015 0.3182 -2.4364 36 1 2.7941 2.0904 -2.6019 37 1 3.7660 -0.7391 -4.5474 38 1 4.4138 -1.8860 -6.2672 39 1 5.1619 -3.1684 -8.2291 40 1 7.0692 -2.3770 -9.5666 41 1 8.2299 -0.2951 -8.9570 42 1 7.4880 1.0052 -7.0046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134791090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:01 Heat of formation + Delta-G solvation = 71.366250 kcal Electronic energy + Delta-G solvation = -25212.085707 eV Core-core repulsion = 21579.750457 eV Total energy + Delta-G solvation = -3632.335250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.23535 -40.59223 -39.81117 -37.26896 -35.64945 -34.53752 -33.50198 -33.05579 -31.80647 -30.45875 -29.72771 -27.49034 -26.25515 -24.66966 -24.06218 -22.69799 -22.33572 -22.09201 -20.80131 -18.94675 -18.61700 -18.24295 -17.50194 -17.09183 -16.63604 -16.50464 -16.01987 -15.96169 -15.74551 -15.40186 -15.13833 -14.57267 -14.52417 -14.24027 -14.16981 -13.80628 -13.61213 -13.43984 -13.15025 -13.01318 -12.76450 -12.65932 -12.34271 -12.18392 -12.10285 -12.05594 -11.97870 -11.70632 -11.58491 -11.47824 -10.93888 -10.86005 -10.44507 -9.80399 -9.47410 -9.19148 -8.40634 -6.17521 0.05151 0.55160 0.70369 1.29861 1.33554 1.39455 1.50813 1.74408 1.85222 2.24848 2.83161 2.94630 3.04428 3.21411 3.64494 3.73026 3.75833 3.95429 4.01662 4.17956 4.21682 4.24127 4.34893 4.35991 4.54923 4.60098 4.64180 4.75428 4.84842 4.89464 4.98806 5.15863 5.17936 5.21627 5.33529 5.41375 5.43084 5.49248 5.60629 5.62056 5.66043 5.71155 6.12575 6.16622 6.44781 7.09870 7.32259 7.49368 7.91348 8.62622 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.002909 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.301660 B = 9623.593623 C =10363.542728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.101 3.899 4 N -0.441 5.441 5 C -0.341 4.341 6 H 0.059 0.941 7 C 0.009 3.991 8 N -0.885 5.885 9 Si 0.978 3.022 10 H -0.284 1.284 11 H -0.264 1.264 12 H -0.265 1.265 13 C 0.433 3.567 14 O -0.612 6.612 15 C 0.105 3.895 16 N -0.269 5.269 17 C -0.025 4.025 18 C -0.007 4.007 19 C -0.024 4.024 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.120 4.120 25 N -0.303 5.303 26 N -0.102 5.102 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.275 0.725 35 H 0.172 0.828 36 H 0.138 0.862 37 H 0.244 0.756 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 -13.053 -15.972 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C -0.022 4.022 4 N -0.160 5.160 5 C -0.469 4.469 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.522 5.522 9 Si 0.801 3.199 10 H -0.210 1.210 11 H -0.188 1.188 12 H -0.189 1.189 13 C 0.221 3.779 14 O -0.497 6.497 15 C -0.019 4.019 16 N -0.061 5.061 17 C -0.176 4.176 18 C -0.144 4.144 19 C -0.026 4.026 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.139 4.139 25 N -0.169 5.169 26 N -0.080 5.080 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.189 0.811 36 H 0.155 0.845 37 H 0.260 0.740 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.170 0.830 41 H 0.159 0.841 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.175 -11.509 -15.348 20.153 hybrid contribution 0.212 -0.133 1.186 1.212 sum -5.963 -11.642 -14.163 19.279 Atomic orbital electron populations 1.21653 0.93172 1.02563 1.02349 1.21913 0.97449 0.95911 1.01857 1.21831 0.79293 0.97271 1.03819 1.43659 1.06228 1.62403 1.03726 1.19270 1.12559 1.22609 0.92507 0.92291 1.26110 0.96799 0.92706 1.03828 1.69968 1.33437 1.13344 1.35452 0.85184 0.78065 0.78915 0.77690 1.20994 1.18825 1.18909 1.20946 0.88183 0.82700 0.86077 1.90622 1.16138 1.55937 1.86984 1.22279 0.88947 1.09384 0.81260 1.46978 1.22213 1.16160 1.20748 1.24268 1.03982 0.97670 0.91726 1.20943 0.97642 0.95760 1.00070 1.17878 0.97426 0.95090 0.92160 1.21401 1.00213 0.92865 0.98166 1.21457 0.97095 1.00557 0.94338 1.21628 0.95648 0.95912 1.00402 1.21347 1.00742 0.95711 0.96450 1.21291 0.96446 1.00252 0.95944 1.75205 1.22716 1.13440 1.05545 1.78376 0.99815 1.18168 1.11680 0.91036 0.91058 0.93520 0.91161 0.93553 0.89990 0.90869 0.91550 0.81086 0.84451 0.73975 0.83292 0.82433 0.83030 0.84112 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.91 71.98 0.71 -2.20 16 2 C -0.13 -3.75 6.17 30.59 0.19 -3.56 16 3 C 0.10 3.75 4.69 86.38 0.40 4.16 16 4 N -0.44 -21.12 2.50 -635.54 -1.59 -22.71 16 5 C -0.34 -18.85 8.84 84.04 0.74 -18.10 16 6 H 0.06 3.54 7.82 -2.91 -0.02 3.51 16 7 C 0.01 0.48 4.95 84.93 0.42 0.90 16 8 N -0.89 -46.49 11.61 21.66 0.25 -46.24 16 9 Si 0.98 41.84 29.59 68.60 2.03 43.87 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 C 0.43 20.52 7.60 87.66 0.67 21.19 16 14 O -0.61 -36.12 15.58 -3.07 -0.05 -36.17 16 15 C 0.11 3.39 5.54 85.63 0.47 3.87 16 16 N -0.27 -9.74 3.19 -350.60 -1.12 -10.86 16 17 C -0.03 -0.71 10.96 83.76 0.92 0.21 16 18 C -0.01 -0.22 6.99 41.04 0.29 0.06 16 19 C -0.02 -0.63 5.88 -20.04 -0.12 -0.75 16 20 C -0.11 -2.00 9.58 22.48 0.22 -1.78 16 21 C -0.12 -1.68 10.03 22.24 0.22 -1.46 16 22 C -0.12 -1.76 10.04 22.31 0.22 -1.54 16 23 C -0.12 -2.42 10.03 22.24 0.22 -2.20 16 24 C -0.12 -3.20 9.71 22.48 0.22 -2.98 16 25 N -0.30 -12.90 12.16 -49.32 -0.60 -13.50 16 26 N -0.10 -4.62 12.09 37.02 0.45 -4.17 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.65 6.58 -2.38 -0.02 1.63 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 3.56 5.76 -2.38 -0.01 3.54 16 33 H 0.07 2.31 6.66 -2.39 -0.02 2.29 16 34 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.17 3.60 6.45 -2.39 -0.02 3.59 16 36 H 0.14 3.91 7.40 -2.39 -0.02 3.89 16 37 H 0.24 3.61 7.41 -2.91 -0.02 3.59 16 38 H 0.15 1.87 7.12 -2.91 -0.02 1.85 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.11 3.24 7.90 -2.91 -0.02 3.22 16 Total: -1.00 -82.74 357.14 6.21 -76.53 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.04 Total: 17.45 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.80 Total: -4.19 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -2.61 Total: -97.48 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.05 Total: -36.17 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -82.74 6.21 -76.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134791090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.893 kcal (2) G-P(sol) polarization free energy of solvation -82.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds