Wall clock time and date at job start Tue Mar 31 2020 10:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 H 1.09005 * 109.47388 * 304.99625 * 3 2 1 5 5 C 1.50706 * 109.47240 * 184.99965 * 3 2 1 6 6 H 1.07995 * 119.99923 * 239.99677 * 5 3 2 7 7 C 1.37875 * 119.99627 * 60.00123 * 5 3 2 8 8 N 1.31512 * 120.00536 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99699 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47053 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46921 * 120.00051 * 9 7 5 12 12 H 1.48499 * 109.46979 * 239.99925 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00106 * 3 2 1 14 14 C 1.34777 * 120.00065 * 274.99791 * 13 3 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 3 17 17 C 1.40127 * 119.99818 * 180.27798 * 16 14 13 18 18 C 1.40458 * 125.89742 * 359.43715 * 17 16 14 19 19 C 1.35234 * 107.91320 * 179.88727 * 18 17 16 20 20 N 1.35792 * 107.73862 * 0.36953 * 19 18 17 21 21 C 1.40114 * 126.03728 * 179.72714 * 20 19 18 22 22 C 1.38858 * 120.07061 * 359.74038 * 21 20 19 23 23 C 1.38118 * 119.93195 * 179.74327 * 22 21 20 24 24 C 1.38280 * 120.06462 * 0.56048 * 23 22 21 25 25 C 1.38279 * 120.14399 * 359.69384 * 24 23 22 26 26 C 1.38119 * 120.06424 * 0.02562 * 25 24 23 27 27 N 1.31234 * 125.89337 * 179.74695 * 17 16 14 28 28 H 1.08997 * 109.47470 * 300.00285 * 1 2 3 29 29 H 1.09007 * 109.47368 * 59.99710 * 1 2 3 30 30 H 1.08997 * 109.47428 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47241 * 240.00426 * 2 1 3 32 32 H 1.08993 * 109.47475 * 120.00198 * 2 1 3 33 33 H 0.96997 * 120.00204 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00386 * 95.00160 * 13 3 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 36 36 H 1.07999 * 126.04293 * 0.02562 * 18 17 16 37 37 H 1.08007 * 126.13225 * 180.10189 * 19 18 17 38 38 H 1.08001 * 120.03357 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.96150 * 180.29646 * 23 22 21 40 40 H 1.08000 * 119.92581 * 179.71734 * 24 23 22 41 41 H 1.07997 * 119.97187 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.03442 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5987 1.5452 -0.1937 11 1 6.4961 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6092 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3416 2.6319 0.4320 16 7 0.0788 3.2674 2.5184 17 6 -1.1890 3.8518 2.6401 18 6 -2.1770 3.8910 1.6425 19 6 -3.2525 4.5368 2.1473 20 7 -2.9550 4.9034 3.4205 21 6 -3.7979 5.6008 4.2959 22 6 -5.0661 5.9859 3.8816 23 6 -5.8966 6.6687 4.7486 24 6 -5.4620 6.9789 6.0242 25 6 -4.1978 6.6014 6.4380 26 6 -3.3647 5.9134 5.5776 27 7 -1.6561 4.4619 3.7040 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0611 -2.9498 34 1 2.2719 2.1232 1.9978 35 1 0.6983 3.2930 3.2644 36 1 -2.0933 3.4765 0.6487 37 1 -4.1802 4.7306 1.6292 38 1 -5.4043 5.7478 2.8839 39 1 -6.8848 6.9642 4.4285 40 1 -6.1116 7.5168 6.6987 41 1 -3.8614 6.8448 7.4350 42 1 -2.3775 5.6185 5.9015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155600909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:40 Heat of formation + Delta-G solvation = 68.949945 kcal Electronic energy + Delta-G solvation = -24930.923893 eV Core-core repulsion = 21298.483864 eV Total energy + Delta-G solvation = -3632.440029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.66716 -41.11400 -39.80487 -37.33453 -35.89589 -34.44648 -33.68092 -32.47414 -32.17739 -31.03803 -29.56576 -28.71959 -25.21805 -24.27016 -24.08485 -22.91390 -21.91607 -21.37487 -21.18120 -19.62129 -19.17343 -18.23151 -17.59034 -17.06665 -16.96033 -16.71951 -16.15761 -15.99960 -15.79839 -15.25596 -15.14592 -14.55814 -14.53395 -14.38422 -14.23787 -13.90168 -13.72081 -13.49367 -13.16419 -12.84663 -12.70004 -12.55675 -12.28782 -12.20623 -12.12494 -12.04372 -11.75206 -11.53885 -11.06110 -10.95923 -10.52554 -10.42730 -10.04909 -9.97228 -9.66596 -8.77142 -8.14620 -6.30952 -0.15172 0.37941 0.94849 1.11384 1.45649 1.47487 1.58211 1.58871 1.91301 2.40011 2.44450 2.84614 3.15199 3.34734 3.52498 3.82814 4.00219 4.09043 4.27217 4.40778 4.47811 4.54163 4.61378 4.63142 4.69078 4.74618 4.78660 5.06048 5.09129 5.11297 5.25913 5.31922 5.43025 5.47397 5.53905 5.55813 5.62981 5.64321 5.79473 5.85161 5.87217 6.09043 6.19209 6.24592 6.61035 6.76837 7.19443 7.36407 7.64653 8.90994 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.035945 B = 0.002359 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.782426 B =11868.597243 C =12289.268624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.710 5.710 14 C 0.704 3.296 15 O -0.596 6.596 16 N -0.642 5.642 17 C 0.321 3.679 18 C -0.278 4.278 19 C 0.075 3.925 20 N -0.326 5.326 21 C 0.139 3.861 22 C -0.149 4.149 23 C -0.089 4.089 24 C -0.132 4.132 25 C -0.098 4.098 26 C -0.146 4.146 27 N -0.344 5.344 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.421 0.579 36 H 0.163 0.837 37 H 0.222 0.778 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.089 11.649 15.979 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.363 5.363 14 C 0.404 3.596 15 O -0.474 6.474 16 N -0.295 5.295 17 C 0.064 3.936 18 C -0.307 4.307 19 C -0.066 4.066 20 N -0.104 5.104 21 C 0.048 3.952 22 C -0.169 4.169 23 C -0.107 4.107 24 C -0.150 4.150 25 C -0.116 4.116 26 C -0.166 4.166 27 N -0.174 5.174 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.259 0.741 36 H 0.180 0.820 37 H 0.238 0.762 38 H 0.166 0.834 39 H 0.181 0.819 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.464 11.836 16.087 26.530 hybrid contribution 1.748 -0.581 -0.670 1.960 sum -15.716 11.255 15.417 24.726 Atomic orbital electron populations 1.21647 0.96906 0.98973 1.00321 1.21815 0.93811 0.99133 1.01364 1.18347 0.93512 0.88882 0.79909 0.97642 1.21579 0.91297 1.38892 1.06703 0.91038 1.25716 1.03104 0.94438 0.95065 1.70040 1.36889 1.38301 1.09845 0.85340 0.79348 0.77755 0.78121 1.18634 1.20509 1.21091 1.45444 1.13555 1.58454 1.18813 1.15892 0.83311 0.78508 0.81916 1.90808 1.52225 1.65016 1.39357 1.41649 1.13586 1.57783 1.16447 1.19158 0.86999 0.94408 0.93081 1.22032 0.93537 1.12102 1.03051 1.23278 1.01389 0.97147 0.84791 1.45628 1.10124 1.43905 1.10702 1.17991 0.90231 0.96786 0.90239 1.21142 0.91335 1.01948 1.02497 1.21391 1.00259 0.95984 0.93114 1.21630 0.96154 1.00236 0.96991 1.21353 0.93985 0.96291 0.99982 1.21003 1.01437 1.01686 0.92478 1.77289 0.94698 1.24289 1.21090 0.94132 0.95077 0.93877 0.90734 0.94155 0.92561 0.76253 0.74137 0.81971 0.76201 0.83360 0.81948 0.82568 0.83242 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.51 71.98 0.61 -4.80 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.30 14.89 2.24 44.25 0.10 14.99 16 4 H 0.01 0.34 7.58 -2.38 -0.02 0.32 16 5 C -0.55 -28.35 8.73 25.60 0.22 -28.12 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.91 5.29 84.65 0.45 1.35 16 8 N -0.91 -51.28 11.29 21.45 0.24 -51.03 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.71 -28.96 5.03 -461.39 -2.32 -31.28 16 14 C 0.70 28.44 7.10 179.05 1.27 29.71 16 15 O -0.60 -27.71 10.59 -4.01 -0.04 -27.76 16 16 N -0.64 -21.45 5.45 -321.22 -1.75 -23.20 16 17 C 0.32 11.09 8.10 133.34 1.08 12.17 16 18 C -0.28 -9.28 9.60 22.12 0.21 -9.07 16 19 C 0.08 1.92 10.81 83.39 0.90 2.82 16 20 N -0.33 -8.99 3.81 -187.43 -0.71 -9.71 16 21 C 0.14 3.12 6.69 38.11 0.25 3.37 16 22 C -0.15 -2.28 9.46 22.39 0.21 -2.07 16 23 C -0.09 -0.95 10.04 22.25 0.22 -0.73 16 24 C -0.13 -1.38 10.04 22.29 0.22 -1.15 16 25 C -0.10 -1.38 10.04 22.25 0.22 -1.16 16 26 C -0.15 -3.06 9.66 22.39 0.22 -2.84 16 27 N -0.34 -11.14 11.88 -54.43 -0.65 -11.79 16 28 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16 29 H 0.03 1.48 7.84 -2.38 -0.02 1.46 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 4.04 5.95 -2.39 -0.01 4.03 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 33 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.40 13.84 8.55 -92.71 -0.79 13.04 16 35 H 0.42 11.35 8.84 -92.71 -0.82 10.53 16 36 H 0.16 6.13 5.90 -2.91 -0.02 6.11 16 37 H 0.22 3.37 7.05 -2.91 -0.02 3.34 16 38 H 0.15 1.61 6.74 -2.91 -0.02 1.59 16 39 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.12 2.81 7.70 -2.91 -0.02 2.79 16 Total: -1.00 -69.65 348.98 2.63 -67.02 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.54 Total: 35.31 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.37 Total: 8.72 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.19 Total: -127.01 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.04 Total: -27.76 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -69.65 2.63 -67.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155600909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.973 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds