Wall clock time and date at job start Tue Mar 31 2020 10:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 H 1.09002 * 109.46733 * 304.99911 * 3 2 1 5 5 C 1.50698 * 109.47121 * 184.99861 * 3 2 1 6 6 H 1.08005 * 120.00024 * 240.00299 * 5 3 2 7 7 C 1.37875 * 120.00067 * 59.99364 * 5 3 2 8 8 N 1.31521 * 120.00052 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00213 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46976 * 90.00384 * 9 7 5 11 11 H 1.48500 * 109.47316 * 210.00198 * 9 7 5 12 12 H 1.48494 * 109.47009 * 330.00503 * 9 7 5 13 13 N 1.46500 * 109.47593 * 64.99495 * 3 2 1 14 14 C 1.34774 * 119.99999 * 275.00364 * 13 3 2 15 15 O 1.21582 * 120.00257 * 359.97438 * 14 13 3 16 16 N 1.34783 * 119.99717 * 179.97438 * 14 13 3 17 17 C 1.40022 * 119.99666 * 185.81324 * 16 14 13 18 18 C 1.38734 * 120.10157 * 319.65123 * 17 16 14 19 19 C 1.38169 * 119.99778 * 179.97438 * 18 17 16 20 20 C 1.38326 * 120.19034 * 359.97438 * 19 18 17 21 21 C 1.38177 * 120.19941 * 359.72696 * 20 19 18 22 22 C 1.38704 * 119.99779 * 0.54806 * 21 20 19 23 23 N 1.40265 * 120.09137 * 179.72606 * 22 21 20 24 24 C 1.35194 * 126.05601 * 357.90667 * 23 22 21 25 25 C 1.35347 * 107.71838 * 179.97438 * 24 23 22 26 26 C 1.39893 * 107.93145 * 0.02562 * 25 24 23 27 27 N 1.30905 * 108.24137 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46644 * 60.00081 * 1 2 3 29 29 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47259 * 300.00376 * 1 2 3 31 31 H 1.08991 * 109.46756 * 239.99310 * 2 1 3 32 32 H 1.09007 * 109.46527 * 119.99422 * 2 1 3 33 33 H 0.97003 * 119.99973 * 179.97438 * 8 7 5 34 34 H 0.97004 * 119.99804 * 94.99353 * 13 3 2 35 35 H 0.96998 * 119.99869 * 5.81806 * 16 14 13 36 36 H 1.08002 * 119.99956 * 359.95084 * 18 17 16 37 37 H 1.07996 * 119.90802 * 179.97438 * 19 18 17 38 38 H 1.07994 * 119.89629 * 180.02562 * 20 19 18 39 39 H 1.07995 * 120.00055 * 180.30060 * 21 20 19 40 40 H 1.08002 * 126.13592 * 359.72742 * 24 23 22 41 41 H 1.07997 * 126.03235 * 180.02562 * 25 24 23 42 42 H 1.07996 * 125.88073 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5538 -0.3522 -0.7596 11 1 6.3836 0.9211 -2.8163 12 1 6.5576 2.0717 -0.6888 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3412 2.6326 0.4316 16 7 0.0784 3.2667 2.5186 17 6 -1.2264 3.7480 2.6820 18 6 -1.8704 4.3835 1.6303 19 6 -3.1581 4.8571 1.7937 20 6 -3.8089 4.6993 3.0041 21 6 -3.1772 4.0621 4.0550 22 6 -1.8826 3.5887 3.9016 23 7 -1.2374 2.9467 4.9689 24 6 -1.7443 2.7589 6.2081 25 6 -0.8136 2.1017 6.9386 26 6 0.2991 1.8807 6.1200 27 7 0.0467 2.3874 4.9397 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0607 -2.9501 34 1 2.2719 2.1232 1.9978 35 1 0.7255 3.3668 3.2342 36 1 -1.3651 4.5083 0.6839 37 1 -3.6579 5.3519 0.9742 38 1 -4.8154 5.0709 3.1265 39 1 -3.6901 3.9364 4.9970 40 1 -2.7158 3.0796 6.5541 41 1 -0.9125 1.8010 7.9711 42 1 1.2100 1.3792 6.4119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155725705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:29 Heat of formation + Delta-G solvation = 71.219975 kcal Electronic energy + Delta-G solvation = -26139.210602 eV Core-core repulsion = 22506.869009 eV Total energy + Delta-G solvation = -3632.341593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57438 -41.37569 -39.73390 -37.20014 -35.62182 -34.41288 -34.31474 -32.80957 -31.13575 -30.78343 -29.68385 -28.67193 -25.20370 -24.53678 -24.11900 -22.36039 -21.82695 -21.44540 -21.30549 -19.70392 -19.20052 -18.39726 -17.83514 -16.99385 -16.75642 -16.28045 -16.11098 -15.95332 -15.87011 -15.35654 -15.04422 -14.67766 -14.55554 -14.38950 -14.20284 -13.67633 -13.59272 -13.51739 -13.21173 -12.90681 -12.81451 -12.67823 -12.49813 -12.18047 -12.09453 -11.79883 -11.65414 -11.34858 -11.22772 -11.07726 -10.88332 -10.55438 -10.08491 -9.74513 -9.40688 -8.75880 -8.17120 -6.34513 -0.13266 0.30896 1.24707 1.43430 1.44235 1.44690 1.55101 1.82755 1.90340 2.24334 2.42071 2.82936 3.11937 3.43324 3.46069 3.92010 4.00840 4.12048 4.28939 4.43795 4.44801 4.45340 4.51993 4.61673 4.70692 4.79104 4.86470 5.02585 5.08084 5.16817 5.22199 5.29435 5.40750 5.49251 5.50671 5.57784 5.61150 5.69887 5.75357 5.83790 5.88612 6.14124 6.23953 6.30507 6.67665 6.72681 7.23356 7.33756 7.72169 8.88541 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.003807 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.847170 B = 7353.367942 C = 8342.325468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.298 3.702 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.716 5.716 14 C 0.695 3.305 15 O -0.616 6.616 16 N -0.673 5.673 17 C 0.143 3.857 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.101 4.101 21 C -0.116 4.116 22 C 0.107 3.893 23 N -0.328 5.328 24 C 0.051 3.949 25 C -0.265 4.265 26 C 0.047 3.953 27 N -0.344 5.344 28 H 0.028 0.972 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.397 0.603 35 H 0.415 0.585 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.216 0.784 41 H 0.183 0.817 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.274 7.407 19.836 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.195 3.805 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.367 5.367 14 C 0.396 3.604 15 O -0.496 6.496 16 N -0.324 5.324 17 C 0.045 3.955 18 C -0.144 4.144 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.137 4.137 22 C 0.012 3.988 23 N -0.104 5.104 24 C -0.091 4.091 25 C -0.293 4.293 26 C -0.138 4.138 27 N -0.165 5.165 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.256 0.744 36 H 0.131 0.869 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.232 0.768 41 H 0.200 0.800 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.424 7.441 17.567 23.327 hybrid contribution 1.544 -0.406 0.714 1.749 sum -11.880 7.035 18.281 22.909 Atomic orbital electron populations 1.21602 0.97221 0.98678 0.99897 1.21790 0.93504 0.99393 1.01102 1.18271 0.93543 0.88682 0.80028 0.98136 1.21540 0.91223 1.39205 1.06803 0.91335 1.25756 1.03418 0.94234 0.94847 1.70050 1.37085 1.38210 1.09826 0.85342 0.78908 0.78817 0.77234 1.19618 1.20997 1.19090 1.45453 1.14173 1.58712 1.18395 1.16155 0.82981 0.78522 0.82750 1.90845 1.52818 1.66363 1.39608 1.42730 1.11688 1.60424 1.17551 1.17495 0.85678 0.98269 0.94046 1.21222 0.97377 0.97658 0.98098 1.21437 0.93017 0.99048 0.99352 1.21377 1.01432 0.98111 0.91047 1.21078 0.90393 0.99817 1.02381 1.17801 0.93380 1.01258 0.86369 1.45929 1.12321 1.43152 1.08987 1.23350 1.02117 1.00016 0.83651 1.21973 0.94084 1.09960 1.03274 1.24644 1.01282 0.97822 0.90077 1.77179 0.96654 1.18876 1.23751 0.95281 0.93897 0.94836 0.90582 0.94586 0.92495 0.76935 0.74445 0.86880 0.83098 0.80732 0.81200 0.76766 0.80011 0.77458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.23 5.45 30.59 0.17 -6.06 16 3 C 0.30 16.17 2.24 44.24 0.10 16.27 16 4 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 5 C -0.55 -30.21 8.73 25.60 0.22 -29.99 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -53.18 11.30 21.45 0.24 -52.94 16 9 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.72 -33.00 5.03 -461.42 -2.32 -35.32 16 14 C 0.70 31.49 6.96 179.05 1.25 32.74 16 15 O -0.62 -31.64 11.23 -3.98 -0.04 -31.69 16 16 N -0.67 -25.18 4.46 -316.80 -1.41 -26.59 16 17 C 0.14 4.81 6.22 38.23 0.24 5.05 16 18 C -0.12 -3.97 8.67 22.37 0.19 -3.78 16 19 C -0.11 -2.46 10.04 22.27 0.22 -2.24 16 20 C -0.10 -1.62 10.04 22.28 0.22 -1.40 16 21 C -0.12 -2.05 9.45 22.37 0.21 -1.84 16 22 C 0.11 2.85 6.70 38.18 0.26 3.11 16 23 N -0.33 -8.33 3.80 -187.37 -0.71 -9.04 16 24 C 0.05 0.86 10.80 83.51 0.90 1.76 16 25 C -0.26 -4.28 10.81 22.00 0.24 -4.04 16 26 C 0.05 1.01 12.03 85.23 1.02 2.03 16 27 N -0.34 -9.82 9.41 -56.97 -0.54 -10.35 16 28 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.03 1.65 5.65 -2.38 -0.01 1.64 16 31 H 0.08 4.36 5.95 -2.39 -0.01 4.35 16 32 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.40 16.30 8.56 -92.71 -0.79 15.51 16 35 H 0.41 14.39 6.67 -92.71 -0.62 13.77 16 36 H 0.11 4.38 6.59 -2.91 -0.02 4.36 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.17 1.54 6.75 -2.91 -0.02 1.52 16 40 H 0.22 1.57 7.05 -2.91 -0.02 1.55 16 41 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.21 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -75.54 345.22 3.21 -72.33 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.34 Total: 40.66 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.31 Total: 7.90 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -4.74 Total: -134.23 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.04 Total: -31.69 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.54 3.21 -72.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155725705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.552 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds