Wall clock time and date at job start Tue Mar 31 2020 10:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47388 * 2 1 4 4 H 1.09000 * 109.47335 * 305.55231 * 3 2 1 5 5 C 1.50694 * 109.47129 * 185.55228 * 3 2 1 6 6 H 1.08002 * 120.00097 * 245.60083 * 5 3 2 7 7 C 1.37880 * 120.00016 * 65.60462 * 5 3 2 8 8 N 1.31515 * 119.99782 * 196.28577 * 7 5 3 9 9 Si 1.86796 * 119.99899 * 16.29178 * 7 5 3 10 10 H 1.48501 * 109.46894 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47120 * 299.99487 * 9 7 5 12 12 H 1.48492 * 109.47334 * 59.99917 * 9 7 5 13 13 N 1.46505 * 109.46905 * 65.55075 * 3 2 1 14 14 C 1.34776 * 120.00032 * 275.00018 * 13 3 2 15 15 O 1.21603 * 119.99834 * 359.97438 * 14 13 3 16 16 N 1.34779 * 119.99966 * 180.02562 * 14 13 3 17 17 C 1.40809 * 119.99774 * 180.02562 * 16 14 13 18 18 C 1.40298 * 126.07279 * 0.02562 * 17 16 14 19 19 N 1.30874 * 108.37921 * 179.97438 * 18 17 16 20 20 N 1.40075 * 108.37840 * 359.97438 * 19 18 17 21 21 C 1.40156 * 126.07499 * 180.02562 * 20 19 18 22 22 C 1.38840 * 120.06734 * 179.69754 * 21 20 19 23 23 C 1.38123 * 119.93211 * 179.74585 * 22 21 20 24 24 C 1.38282 * 120.06525 * 0.53329 * 23 22 21 25 25 C 1.38284 * 120.13238 * 359.74339 * 24 23 22 26 26 C 1.38108 * 120.07149 * 359.97438 * 25 24 23 27 27 C 1.35728 * 126.06721 * 179.71392 * 17 16 14 28 28 H 1.09000 * 109.46819 * 60.00253 * 1 2 3 29 29 H 1.09005 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46932 * 300.00021 * 1 2 3 31 31 H 1.09005 * 109.47191 * 239.99455 * 2 1 3 32 32 H 1.09001 * 109.46746 * 120.00526 * 2 1 3 33 33 H 0.97005 * 120.00331 * 354.83659 * 8 7 5 34 34 H 0.97002 * 119.99353 * 95.00207 * 13 3 2 35 35 H 0.97002 * 119.99419 * 359.97438 * 16 14 13 36 36 H 1.07995 * 125.81393 * 359.96814 * 18 17 16 37 37 H 1.07999 * 120.03445 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.96540 * 180.27395 * 23 22 21 39 39 H 1.07997 * 119.93106 * 179.76364 * 24 23 22 40 40 H 1.08002 * 119.96317 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.03562 * 180.02562 * 26 25 24 42 42 H 1.08001 * 126.23342 * 0.03410 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5979 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1568 1.8040 0.6735 7 6 4.1273 0.9877 -1.2986 8 7 5.4073 0.6858 -1.3140 9 14 3.1041 0.7978 -2.8498 10 1 3.9634 0.2933 -3.9509 11 1 2.0024 -0.1664 -2.6011 12 1 2.5330 2.1145 -3.2304 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3854 15 8 -0.3372 2.6312 0.4570 16 7 0.1018 3.2592 2.5420 17 6 -1.1690 3.8507 2.6759 18 6 -2.1696 3.8899 1.6932 19 7 -3.2056 4.5211 2.1842 20 7 -2.9061 4.9073 3.4969 21 6 -3.7553 5.6063 4.3656 22 6 -3.3309 5.9211 5.6495 23 6 -4.1681 6.6147 6.5015 24 6 -5.4319 6.9858 6.0806 25 6 -5.8596 6.6687 4.8044 26 6 -5.0249 5.9804 3.9459 27 6 -1.6457 4.4788 3.7806 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.9550 0.8548 -0.5314 34 1 2.2902 2.1166 1.9978 35 1 0.7281 3.2824 3.2824 36 1 -2.0972 3.4708 0.7005 37 1 -2.3454 5.6279 5.9802 38 1 -3.8368 6.8637 7.4988 39 1 -6.0861 7.5247 6.7499 40 1 -6.8474 6.9595 4.4787 41 1 -5.3593 5.7334 2.9491 42 1 -1.1199 4.6157 4.7140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156093592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:46 Heat of formation + Delta-G solvation = 62.341150 kcal Electronic energy + Delta-G solvation = -25013.380174 eV Core-core repulsion = 21380.653566 eV Total energy + Delta-G solvation = -3632.726608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.69567 -41.06072 -39.83015 -37.39304 -35.73278 -34.54513 -34.13043 -32.94884 -32.06853 -30.71602 -29.58703 -28.64952 -24.55239 -24.39718 -23.97488 -23.07313 -21.99036 -21.39287 -21.32526 -20.10675 -19.21915 -18.73801 -17.60012 -17.06336 -16.82416 -16.46165 -16.25089 -16.09938 -15.64897 -15.27719 -15.06632 -14.77602 -14.55476 -14.48891 -14.35061 -14.20629 -13.83481 -13.78239 -13.58337 -12.67095 -12.56755 -12.46676 -12.29868 -12.27174 -12.05997 -11.78723 -11.75136 -11.35870 -11.16619 -11.12447 -10.97105 -10.45439 -9.99227 -9.88663 -9.61410 -8.78187 -8.54445 -6.41611 -0.18590 0.36438 1.11852 1.21438 1.48350 1.52588 1.53413 1.70878 1.84839 2.42351 2.43806 2.83008 3.03967 3.39936 3.51092 3.78846 3.96605 3.98382 4.23748 4.28165 4.36740 4.43034 4.45058 4.46188 4.57714 4.63315 4.70540 4.88766 5.04637 5.06715 5.15881 5.25555 5.32623 5.35727 5.41033 5.54364 5.59139 5.64332 5.71460 5.73356 5.83680 6.03249 6.13733 6.21622 6.52138 6.56666 7.20094 7.32154 7.66770 8.62735 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.002478 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.929998 B =11296.473396 C =11638.305529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.271 3.729 4 H 0.024 0.976 5 C -0.610 4.610 6 H 0.042 0.958 7 C -0.005 4.005 8 N -0.930 5.930 9 Si 1.070 2.930 10 H -0.285 1.285 11 H -0.243 1.243 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.698 3.302 15 O -0.610 6.610 16 N -0.649 5.649 17 C 0.028 3.972 18 C 0.046 3.954 19 N -0.308 5.308 20 N -0.326 5.326 21 C 0.139 3.861 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.131 4.131 25 C -0.098 4.098 26 C -0.147 4.147 27 C 0.022 3.978 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.258 0.742 34 H 0.402 0.598 35 H 0.422 0.578 36 H 0.196 0.804 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.119 0.881 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.554 11.158 19.254 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C 0.166 3.834 4 H 0.042 0.958 5 C -0.648 4.648 6 H 0.060 0.940 7 C -0.206 4.206 8 N -0.565 5.565 9 Si 0.892 3.108 10 H -0.211 1.211 11 H -0.167 1.167 12 H -0.200 1.200 13 N -0.364 5.364 14 C 0.399 3.601 15 O -0.490 6.490 16 N -0.298 5.298 17 C -0.077 4.077 18 C -0.141 4.141 19 N -0.128 5.128 20 N -0.104 5.104 21 C 0.047 3.953 22 C -0.166 4.166 23 C -0.109 4.109 24 C -0.149 4.149 25 C -0.117 4.117 26 C -0.167 4.167 27 C -0.123 4.123 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.236 0.764 35 H 0.260 0.740 36 H 0.212 0.788 37 H 0.168 0.832 38 H 0.181 0.819 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.137 0.863 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.294 10.988 16.616 29.159 hybrid contribution 2.058 0.097 1.937 2.828 sum -19.236 11.085 18.553 28.933 Atomic orbital electron populations 1.21732 0.95580 1.00030 1.01462 1.22271 0.95299 0.98477 1.01491 1.18631 0.93173 0.89309 0.82309 0.95820 1.22282 0.91483 1.47875 1.03155 0.94015 1.26763 0.97694 0.92214 1.03922 1.70984 1.08054 1.43421 1.34018 0.83739 0.75196 0.78669 0.73162 1.21108 1.16729 1.20013 1.45161 1.13995 1.59142 1.18131 1.16001 0.82822 0.78626 0.82671 1.90752 1.51889 1.65895 1.40511 1.41689 1.14381 1.58227 1.15530 1.17602 0.88258 1.06423 0.95428 1.24628 0.89801 0.98234 1.01470 1.77393 1.23889 1.19479 0.92023 1.45682 1.11392 1.43306 1.10012 1.17947 0.90706 0.96947 0.89701 1.21155 1.02552 1.02036 0.90855 1.21409 0.93352 0.95729 1.00366 1.21639 0.96936 1.00194 0.96142 1.21345 1.00034 0.96496 0.93780 1.21001 0.92832 1.01454 1.01405 1.22347 0.87016 1.02235 1.00701 0.94013 0.92968 0.93388 0.92312 0.92717 0.93275 0.76385 0.73976 0.78775 0.83179 0.81932 0.82591 0.83292 0.86325 0.76036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 8.53 71.98 0.61 -4.44 16 2 C -0.14 -5.83 5.27 30.59 0.16 -5.67 16 3 C 0.27 12.47 1.82 44.24 0.08 12.55 16 4 H 0.02 1.21 6.25 -2.39 -0.01 1.19 16 5 C -0.61 -32.44 9.01 25.60 0.23 -32.21 16 6 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 7 C -0.01 -0.29 5.32 84.66 0.45 0.16 16 8 N -0.93 -55.69 13.70 21.45 0.29 -55.39 16 9 Si 1.07 50.01 26.27 68.60 1.80 51.81 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.24 -10.30 5.67 99.48 0.56 -9.74 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.71 -26.93 5.03 -461.40 -2.32 -29.25 16 14 C 0.70 25.22 7.13 179.05 1.28 26.50 16 15 O -0.61 -25.72 10.63 -4.04 -0.04 -25.77 16 16 N -0.65 -17.51 5.48 -317.68 -1.74 -19.25 16 17 C 0.03 0.78 6.90 37.62 0.26 1.04 16 18 C 0.05 1.54 10.84 85.34 0.92 2.46 16 19 N -0.31 -9.79 11.86 -56.72 -0.67 -10.47 16 20 N -0.33 -8.32 3.82 -186.82 -0.71 -9.04 16 21 C 0.14 2.92 6.69 38.10 0.25 3.17 16 22 C -0.15 -2.00 9.46 22.39 0.21 -1.79 16 23 C -0.09 -0.86 10.04 22.25 0.22 -0.64 16 24 C -0.13 -1.27 10.04 22.29 0.22 -1.04 16 25 C -0.10 -1.33 10.04 22.25 0.22 -1.10 16 26 C -0.15 -2.97 9.66 22.39 0.22 -2.76 16 27 C 0.02 0.46 10.86 83.45 0.91 1.37 16 28 H 0.04 1.69 7.88 -2.39 -0.02 1.67 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 30 H 0.05 1.86 5.63 -2.39 -0.01 1.84 16 31 H 0.06 2.62 4.74 -2.38 -0.01 2.61 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.26 15.44 8.73 -92.70 -0.81 14.63 16 34 H 0.40 13.18 8.54 -92.71 -0.79 12.39 16 35 H 0.42 7.99 8.84 -92.71 -0.82 7.17 16 36 H 0.20 7.21 5.91 -2.91 -0.02 7.20 16 37 H 0.15 1.32 6.75 -2.91 -0.02 1.30 16 38 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.12 2.75 7.70 -2.91 -0.02 2.73 16 42 H 0.22 2.46 7.07 -2.91 -0.02 2.44 16 Total: -1.00 -72.27 344.74 2.15 -70.13 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.71 Total: 29.63 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 6.26 Total: -2.40 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -5.16 Total: -123.40 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.04 Total: -25.77 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 1.80 Total: 51.81 kcal Total: -72.27 2.15 -70.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156093592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.466 kcal (2) G-P(sol) polarization free energy of solvation -72.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds