Wall clock time and date at job start Tue Mar 31 2020 10:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46655 * 2 1 4 4 C 1.50701 * 109.46931 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00215 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00005 * 179.97438 * 4 3 2 7 7 C 1.47603 * 122.42938 * 0.02562 * 6 4 3 8 8 S 1.84081 * 102.63507 * 204.78624 * 7 6 4 9 9 C 1.84213 * 93.90917 * 326.56374 * 8 7 6 10 10 C 1.45506 * 122.42577 * 179.97438 * 6 4 3 11 11 H 1.08996 * 108.75182 * 58.14375 * 10 6 4 12 12 C 1.50700 * 108.75494 * 299.91250 * 10 6 4 13 13 O 1.21274 * 119.99926 * 0.02562 * 12 10 6 14 14 N 1.34773 * 119.99750 * 180.02562 * 12 10 6 15 15 C 1.46497 * 120.00139 * 179.97438 * 14 12 10 16 16 H 1.09007 * 109.47018 * 325.00755 * 15 14 12 17 17 C 1.50703 * 109.47489 * 205.00343 * 15 14 12 18 18 H 1.07998 * 119.99948 * 359.97438 * 17 15 14 19 19 C 1.37875 * 119.99697 * 180.02562 * 17 15 14 20 20 N 1.31514 * 120.00505 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99758 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46782 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47000 * 120.00053 * 21 19 17 24 24 H 1.48498 * 109.46999 * 240.00195 * 21 19 17 25 25 C 1.53006 * 109.47007 * 85.00157 * 15 14 12 26 26 C 1.52997 * 109.47127 * 295.00479 * 25 15 14 27 27 H 1.08998 * 109.46828 * 300.00313 * 1 2 3 28 28 H 1.08998 * 109.46571 * 60.00626 * 1 2 3 29 29 H 1.09000 * 109.46446 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47389 * 239.99933 * 2 1 3 31 31 H 1.09000 * 109.47307 * 119.99360 * 2 1 3 32 32 H 1.08996 * 109.47658 * 59.99718 * 3 2 1 33 33 H 1.09009 * 109.47281 * 299.99503 * 3 2 1 34 34 H 1.09001 * 110.77614 * 323.07421 * 7 6 4 35 35 H 1.08999 * 110.77364 * 86.31298 * 7 6 4 36 36 H 1.08990 * 111.05180 * 274.24161 * 9 8 7 37 37 H 1.08998 * 111.04659 * 150.27275 * 9 8 7 38 38 H 0.97001 * 119.99921 * 0.02562 * 14 12 10 39 39 H 0.96991 * 120.00090 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47002 * 55.00053 * 25 15 14 41 41 H 1.08993 * 109.46955 * 175.00490 * 25 15 14 42 42 H 1.09002 * 109.47153 * 179.97438 * 26 25 15 43 43 H 1.09001 * 109.47289 * 299.99953 * 26 25 15 44 44 H 1.09004 * 109.47261 * 59.99697 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1535 0.3924 0.0006 6 7 4.2208 2.6099 0.0002 7 6 3.5376 3.9183 -0.0003 8 16 4.7968 5.0298 -0.7537 9 6 6.2217 4.1168 -0.0260 10 6 5.6746 2.6715 0.0013 11 1 6.0484 2.1414 -0.8746 12 6 6.1878 1.9821 1.2392 13 8 5.4076 1.4942 2.0291 14 7 7.5139 1.9078 1.4684 15 6 8.0129 1.2382 2.6720 16 1 7.3236 1.4141 3.4979 17 6 9.3712 1.7868 3.0256 18 1 9.8183 2.5570 2.4147 19 6 10.0435 1.3047 4.1286 20 7 9.4994 0.3664 4.8723 21 14 11.7276 1.9843 4.5665 22 1 12.1143 3.0232 3.5785 23 1 11.6815 2.5842 5.9242 24 1 12.7259 0.8851 4.5447 25 6 8.1224 -0.2654 2.4107 26 6 6.7263 -0.8450 2.1743 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8935 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 2.6365 3.8836 -0.6126 35 1 3.3005 4.2310 1.0166 36 1 6.4406 4.4714 0.9812 37 1 7.1015 4.1907 -0.6651 38 1 8.1378 2.2985 0.8367 39 1 9.9722 0.0276 5.6484 40 1 8.7409 -0.4370 1.5298 41 1 8.5763 -0.7520 3.2739 42 1 6.8043 -1.9161 1.9877 43 1 6.1076 -0.6734 3.0552 44 1 6.2722 -0.3583 1.3111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183939242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:19 Heat of formation + Delta-G solvation = -93.798286 kcal Electronic energy + Delta-G solvation = -25436.550681 eV Core-core repulsion = 21900.204560 eV Total energy + Delta-G solvation = -3536.346122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69878 -40.05956 -37.50634 -36.66624 -35.32058 -34.41862 -33.29099 -31.95542 -29.05757 -28.70290 -28.28958 -25.50497 -24.67826 -23.12032 -21.91475 -21.16022 -20.39941 -19.16688 -18.41844 -17.96841 -17.82699 -17.08199 -16.71308 -16.51505 -16.15001 -15.83366 -15.49594 -15.07853 -14.92159 -14.61119 -14.38210 -14.28070 -13.95819 -13.80224 -13.52899 -13.23417 -13.19382 -13.03162 -12.86966 -12.79526 -12.69413 -12.64556 -12.17280 -12.07074 -12.02006 -11.92806 -11.63787 -11.60181 -11.06280 -10.93674 -10.65472 -10.52782 -9.83864 -9.63326 -8.93386 -8.16212 -6.34015 0.55188 0.86318 1.43868 1.44473 1.48796 1.57080 1.73856 1.84114 2.35981 2.63186 3.12231 3.15536 3.57807 3.71820 3.95155 3.99809 4.02796 4.14941 4.26988 4.38168 4.44076 4.46400 4.54708 4.56556 4.69809 4.71321 4.75271 4.87605 5.02530 5.10244 5.22621 5.24172 5.27619 5.42165 5.46298 5.54038 5.61764 5.76810 5.90460 6.14736 6.14832 6.74646 6.94444 7.15607 7.33430 7.56911 8.89393 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.004145 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.841463 B = 6753.051908 C = 8182.636902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.125 4.125 4 C 0.521 3.479 5 O -0.560 6.560 6 N -0.606 5.606 7 C 0.153 3.847 8 S -0.256 6.256 9 C -0.059 4.059 10 C 0.121 3.879 11 H 0.111 0.889 12 C 0.493 3.507 13 O -0.564 6.564 14 N -0.703 5.703 15 C 0.285 3.715 16 H -0.004 1.004 17 C -0.544 4.544 18 H 0.076 0.924 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.257 1.257 23 H -0.285 1.285 24 H -0.282 1.282 25 C -0.119 4.119 26 C -0.119 4.119 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.156 0.844 38 H 0.403 0.597 39 H 0.264 0.736 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.018 0.982 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 9.062 -13.942 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.165 4.165 4 C 0.311 3.689 5 O -0.437 6.437 6 N -0.342 5.342 7 C -0.080 4.080 8 S -0.029 6.029 9 C -0.208 4.208 10 C 0.011 3.989 11 H 0.129 0.871 12 C 0.277 3.723 13 O -0.443 6.443 14 N -0.353 5.353 15 C 0.181 3.819 16 H 0.014 0.986 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.796 3.204 22 H -0.180 1.180 23 H -0.211 1.211 24 H -0.208 1.208 25 C -0.158 4.158 26 C -0.176 4.176 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.170 0.830 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.174 0.826 38 H 0.238 0.762 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.037 0.963 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.226 9.032 -13.956 21.879 hybrid contribution 1.459 -1.005 1.371 2.240 sum -12.767 8.027 -12.585 19.642 Atomic orbital electron populations 1.21733 0.92963 1.02430 1.02958 1.21252 0.97214 0.94764 1.01576 1.21782 0.87788 1.00430 1.06462 1.21383 0.91874 0.81622 0.74062 1.90717 1.71394 1.32159 1.49445 1.48323 1.03961 1.06878 1.75016 1.24519 0.97664 0.81009 1.04801 1.88238 1.03478 1.43167 1.68031 1.24537 0.99975 0.90081 1.06190 1.21183 0.83051 0.97629 0.97073 0.87108 1.21139 0.83066 0.80201 0.87928 1.90661 1.56789 1.48126 1.48750 1.46171 1.06032 1.57371 1.25696 1.18285 0.92910 0.88802 0.81867 0.98643 1.21604 1.02382 1.22153 1.12058 0.90569 1.25802 1.02014 0.94991 0.95814 1.70072 1.39724 1.28714 1.17034 0.85313 0.78691 0.78351 0.78070 1.18048 1.21083 1.20764 1.21790 0.94832 0.98738 1.00442 1.21638 0.97583 0.98292 1.00109 0.91935 0.90739 0.92469 0.92505 0.94400 0.87304 0.85257 0.82994 0.88015 0.88112 0.82581 0.76208 0.92709 0.94351 0.91156 0.94813 0.96283 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 71.99 0.71 -1.35 16 2 C -0.11 -2.38 5.22 30.60 0.16 -2.22 16 3 C -0.13 -2.36 4.49 29.85 0.13 -2.22 16 4 C 0.52 15.35 6.74 87.66 0.59 15.94 16 5 O -0.56 -22.46 14.16 15.52 0.22 -22.24 16 6 N -0.61 -15.55 2.76 -807.45 -2.23 -17.78 16 7 C 0.15 2.58 7.21 127.56 0.92 3.50 16 8 S -0.26 -4.70 23.43 -56.49 -1.32 -6.02 16 9 C -0.06 -1.22 6.68 72.51 0.48 -0.74 16 10 C 0.12 3.37 2.87 44.96 0.13 3.50 16 11 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 12 C 0.49 19.38 5.03 87.66 0.44 19.82 16 13 O -0.56 -27.21 11.73 15.53 0.18 -27.03 16 14 N -0.70 -28.59 4.89 -446.09 -2.18 -30.77 16 15 C 0.28 14.72 2.24 44.25 0.10 14.82 16 16 H 0.00 -0.27 7.58 -2.38 -0.02 -0.28 16 17 C -0.54 -28.42 8.73 25.60 0.22 -28.19 16 18 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 19 C 0.01 0.73 5.29 84.65 0.45 1.18 16 20 N -0.92 -53.03 11.29 21.45 0.24 -52.79 16 21 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 C -0.12 -6.18 5.45 30.60 0.17 -6.01 16 26 C -0.12 -5.98 8.51 71.98 0.61 -5.37 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 31 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.13 1.41 7.63 -2.38 -0.02 1.39 16 34 H 0.15 1.44 7.13 -2.39 -0.02 1.42 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 2.33 7.85 -2.39 -0.02 2.31 16 37 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.40 13.52 8.30 -92.71 -0.77 12.75 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 4.05 5.95 -2.39 -0.01 4.04 16 42 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 44 H 0.05 2.55 5.14 -2.38 -0.01 2.54 16 Total: -1.00 -75.61 360.45 2.28 -73.32 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.23 Total: 26.76 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.12 Total: 12.66 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -4.17 Total: -101.34 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: 0.40 Total: -49.27 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -1.32 Total: -6.02 kcal Total: -75.61 2.28 -73.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.477 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds