Wall clock time and date at job start Tue Mar 31 2020 10:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47206 * 2 1 4 4 H 1.08999 * 109.47284 * 305.75899 * 3 2 1 5 5 C 1.50693 * 109.47263 * 185.75199 * 3 2 1 6 6 H 1.08000 * 120.00227 * 243.73047 * 5 3 2 7 7 C 1.37880 * 119.99959 * 63.73710 * 5 3 2 8 8 N 1.31511 * 119.99976 * 195.92283 * 7 5 3 9 9 Si 1.86798 * 119.99830 * 15.92073 * 7 5 3 10 10 H 1.48504 * 109.46850 * 180.02562 * 9 7 5 11 11 H 1.48491 * 109.47562 * 300.00209 * 9 7 5 12 12 H 1.48507 * 109.47198 * 60.00456 * 9 7 5 13 13 N 1.46501 * 109.46835 * 65.75416 * 3 2 1 14 14 C 1.34784 * 119.99831 * 275.00026 * 13 3 2 15 15 O 1.21570 * 120.00127 * 0.02562 * 14 13 3 16 16 C 1.47674 * 119.99568 * 180.02562 * 14 13 3 17 17 C 1.39722 * 120.08311 * 0.02562 * 16 14 13 18 18 C 1.37708 * 119.92352 * 180.02562 * 17 16 14 19 19 C 1.39071 * 120.07465 * 0.02562 * 18 17 16 20 20 N 1.39875 * 119.91794 * 179.97438 * 19 18 17 21 21 C 1.34801 * 126.84603 * 353.78103 * 20 19 18 22 22 N 1.30814 * 108.01907 * 179.97438 * 21 20 19 23 23 C 1.33288 * 109.85156 * 359.97438 * 22 21 20 24 24 N 1.30729 * 109.00778 * 359.71803 * 23 22 21 25 25 C 1.39016 * 120.16082 * 359.97438 * 19 18 17 26 26 C 1.50704 * 119.96166 * 179.97438 * 25 19 18 27 27 C 1.37757 * 120.08084 * 359.71989 * 25 19 18 28 28 H 1.09002 * 109.47118 * 59.99928 * 1 2 3 29 29 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47435 * 299.99904 * 1 2 3 31 31 H 1.09000 * 109.47435 * 240.00096 * 2 1 3 32 32 H 1.09008 * 109.46944 * 119.99656 * 2 1 3 33 33 H 0.96998 * 120.00110 * 354.93621 * 8 7 5 34 34 H 0.96996 * 120.00402 * 95.00302 * 13 3 2 35 35 H 1.08001 * 120.03766 * 359.97272 * 17 16 14 36 36 H 1.07996 * 119.95994 * 179.97438 * 18 17 16 37 37 H 1.08000 * 125.98838 * 359.96947 * 21 20 19 38 38 H 1.07994 * 125.49605 * 180.02562 * 23 22 21 39 39 H 1.08997 * 109.47385 * 84.04713 * 26 25 19 40 40 H 1.09002 * 109.46930 * 204.04448 * 26 25 19 41 41 H 1.08998 * 109.46872 * 324.04744 * 26 25 19 42 42 H 1.08001 * 120.04262 * 180.29818 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9853 -0.8339 5 6 3.5402 1.4449 -0.1424 6 1 4.1577 1.8315 0.6549 7 6 4.1245 0.9537 -1.2906 8 7 5.4068 0.6621 -1.3029 9 14 3.0946 0.7025 -2.8287 10 1 3.9524 0.1681 -3.9168 11 1 2.0025 -0.2617 -2.5412 12 1 2.5103 2.0008 -3.2507 13 7 1.6680 2.0919 1.2594 14 6 0.4521 2.6583 1.3921 15 8 -0.3360 2.6299 0.4669 16 6 0.0774 3.3134 2.6615 17 6 0.9821 3.3476 3.7257 18 6 0.6290 3.9589 4.9081 19 6 -0.6265 4.5413 5.0437 20 7 -0.9819 5.1609 6.2464 21 6 -0.2698 5.1728 7.3908 22 7 -0.9432 5.8572 8.2793 23 6 -2.0823 6.2962 7.7443 24 7 -2.1483 5.9010 6.4999 25 6 -1.5292 4.5093 3.9870 26 6 -2.8888 5.1413 4.1391 27 6 -1.1805 3.9050 2.7991 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 5.9568 0.8608 -0.5291 34 1 2.2966 2.1144 1.9977 35 1 1.9568 2.8943 3.6214 36 1 1.3277 3.9853 5.7312 37 1 0.6887 4.7001 7.5469 38 1 -2.8279 6.8875 8.2548 39 1 -2.8188 6.2087 3.9296 40 1 -3.5849 4.6787 3.4394 41 1 -3.2461 4.9937 5.1582 42 1 -1.8805 3.8847 1.9769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183968091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:35 Heat of formation + Delta-G solvation = 88.391114 kcal Electronic energy + Delta-G solvation = -25401.962412 eV Core-core repulsion = 21770.365415 eV Total energy + Delta-G solvation = -3631.596997 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.71845 -40.19850 -38.64958 -35.41113 -34.48058 -33.35548 -32.46528 -31.76900 -31.30967 -29.91724 -27.53339 -26.97041 -24.78017 -23.13587 -22.54301 -22.20427 -21.28040 -20.53743 -19.63709 -18.49605 -18.08787 -16.77899 -16.39541 -16.22018 -15.73264 -15.17796 -14.73059 -14.67471 -14.44134 -14.10148 -13.80968 -13.59652 -13.42789 -13.14001 -12.90593 -12.65284 -12.54098 -12.43261 -12.26588 -11.83149 -11.68264 -11.30192 -11.05542 -10.94765 -10.73577 -10.48118 -10.38183 -10.19333 -9.95301 -9.62739 -9.36799 -9.16500 -9.09454 -8.60696 -8.40418 -8.16960 -6.63604 -4.28286 0.19665 1.00164 1.50592 1.80789 2.50845 2.98278 3.33817 3.41213 3.54729 3.76738 3.85174 3.85979 4.02424 4.34912 4.37000 4.48923 4.59763 4.88342 5.04010 5.09493 5.11589 5.14552 5.39944 5.56765 5.60260 5.70550 5.87063 5.89934 6.01760 6.03776 6.04963 6.13927 6.21753 6.24016 6.34450 6.63077 6.67959 6.74809 6.87746 6.98574 7.28231 7.31663 7.56826 7.59785 8.16813 8.34337 8.61481 8.84191 9.41018 10.77310 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002884 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.444720 B = 9705.414343 C =10324.156945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.247 3.753 4 H 0.043 0.957 5 C -0.618 4.618 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.039 2.961 10 H -0.284 1.284 11 H -0.266 1.266 12 H -0.280 1.280 13 N -0.692 5.692 14 C 0.542 3.458 15 O -0.542 6.542 16 C -0.116 4.116 17 C -0.070 4.070 18 C -0.133 4.133 19 C 0.151 3.849 20 N -0.322 5.322 21 C 0.260 3.740 22 N -0.538 5.538 23 C 0.198 3.802 24 N -0.307 5.307 25 C -0.082 4.082 26 C -0.113 4.113 27 C -0.045 4.045 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.269 0.731 34 H 0.392 0.608 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.223 0.777 38 H 0.222 0.778 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 7.527 15.967 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C 0.144 3.856 4 H 0.061 0.939 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.206 1.206 13 N -0.340 5.340 14 C 0.327 3.673 15 O -0.422 6.422 16 C -0.120 4.120 17 C -0.089 4.089 18 C -0.154 4.154 19 C 0.058 3.942 20 N -0.106 5.106 21 C -0.035 4.035 22 N -0.264 5.264 23 C -0.104 4.104 24 N -0.133 5.133 25 C -0.085 4.085 26 C -0.169 4.169 27 C -0.065 4.065 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.226 0.774 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.239 0.761 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.402 7.152 13.602 20.390 hybrid contribution 0.679 0.516 2.068 2.237 sum -12.723 7.668 15.670 21.592 Atomic orbital electron populations 1.21888 0.97336 0.98974 1.01953 1.22426 0.93887 0.99668 1.02139 1.19107 0.95982 0.88647 0.81907 0.93893 1.22077 0.89606 1.48285 1.05648 0.92038 1.25681 0.97565 0.92448 1.01023 1.70879 1.06782 1.40698 1.34653 0.84161 0.75513 0.77774 0.75862 1.20933 1.19264 1.20558 1.46220 1.14144 1.55365 1.18246 1.18082 0.83043 0.79391 0.86761 1.90750 1.50709 1.60012 1.40722 1.20420 0.95303 1.00979 0.95270 1.21203 0.99472 0.96902 0.91365 1.20675 0.94110 1.01121 0.99496 1.17593 0.94836 0.98023 0.83778 1.47704 1.15268 1.37825 1.09786 1.26252 0.99067 0.96647 0.81544 1.70627 1.06951 1.16902 1.31870 1.26287 0.95765 0.98617 0.89727 1.78306 1.02998 1.13968 1.17999 1.19679 0.96834 0.99911 0.92033 1.21041 0.91498 1.00291 1.04095 1.21145 0.95588 0.93480 0.96279 0.92973 0.94996 0.93323 0.90944 0.93004 0.92090 0.77383 0.84074 0.84540 0.76067 0.76220 0.90835 0.91759 0.89037 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.53 37.15 0.32 -2.51 16 2 C -0.14 -3.07 5.25 -26.73 -0.14 -3.21 16 3 C 0.25 5.65 1.81 -69.08 -0.13 5.52 16 4 H 0.04 1.08 6.37 -51.93 -0.33 0.75 16 5 C -0.62 -16.09 9.03 -34.44 -0.31 -16.40 16 6 H 0.06 1.66 7.97 -52.49 -0.42 1.25 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.99 16 8 N -0.90 -26.09 13.70 55.43 0.76 -25.33 16 9 Si 1.04 24.40 26.25 -169.99 -4.46 19.94 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -5.80 5.52 56.52 0.31 -5.49 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.69 -13.18 4.98 -55.93 -0.28 -13.46 16 14 C 0.54 9.84 6.37 -12.40 -0.08 9.76 16 15 O -0.54 -11.40 13.47 5.30 0.07 -11.33 16 16 C -0.12 -1.64 5.88 -104.95 -0.62 -2.26 16 17 C -0.07 -0.79 9.53 -39.22 -0.37 -1.16 16 18 C -0.13 -1.25 9.45 -39.47 -0.37 -1.63 16 19 C 0.15 1.65 6.67 -83.59 -0.56 1.09 16 20 N -0.32 -3.35 3.79 -11.77 -0.04 -3.40 16 21 C 0.26 2.24 11.96 -90.33 -1.08 1.16 16 22 N -0.54 -5.34 11.19 -15.73 -0.18 -5.52 16 23 C 0.20 1.78 13.03 -91.76 -1.20 0.58 16 24 N -0.31 -3.26 8.84 29.30 0.26 -3.00 16 25 C -0.08 -0.97 5.89 -104.51 -0.62 -1.58 16 26 C -0.11 -1.17 8.74 36.01 0.31 -0.85 16 27 C -0.05 -0.60 9.21 -39.22 -0.36 -0.96 16 28 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.94 5.63 -51.93 -0.29 0.65 16 31 H 0.07 1.64 4.42 -51.93 -0.23 1.41 16 32 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.27 7.72 8.73 -40.82 -0.36 7.36 16 34 H 0.39 6.51 6.55 -40.82 -0.27 6.24 16 35 H 0.14 1.38 6.39 -52.49 -0.34 1.04 16 36 H 0.14 0.81 6.82 -52.49 -0.36 0.45 16 37 H 0.22 0.97 7.12 -52.49 -0.37 0.60 16 38 H 0.22 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 41 H 0.09 0.98 5.71 -51.93 -0.30 0.69 16 42 H 0.15 1.94 7.64 -52.49 -0.40 1.53 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -32.53 340.39 -9.10 -41.63 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.06 Total: 6.81 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -5.29 Total: -11.47 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.52 Total: -50.70 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.46 Total: 19.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.53 -9.10 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183968091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.020 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds