Wall clock time and date at job start Tue Mar 31 2020 10:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47206 * 2 1 4 4 H 1.08999 * 109.47284 * 305.75899 * 3 2 1 5 5 C 1.50693 * 109.47263 * 185.75199 * 3 2 1 6 6 H 1.08000 * 120.00227 * 243.73047 * 5 3 2 7 7 C 1.37880 * 119.99959 * 63.73710 * 5 3 2 8 8 N 1.31511 * 119.99976 * 195.92283 * 7 5 3 9 9 Si 1.86798 * 119.99830 * 15.92073 * 7 5 3 10 10 H 1.48504 * 109.46850 * 180.02562 * 9 7 5 11 11 H 1.48491 * 109.47562 * 300.00209 * 9 7 5 12 12 H 1.48507 * 109.47198 * 60.00456 * 9 7 5 13 13 N 1.46501 * 109.46835 * 65.75416 * 3 2 1 14 14 C 1.34784 * 119.99831 * 275.00026 * 13 3 2 15 15 O 1.21570 * 120.00127 * 0.02562 * 14 13 3 16 16 C 1.47674 * 119.99568 * 180.02562 * 14 13 3 17 17 C 1.39722 * 120.08311 * 0.02562 * 16 14 13 18 18 C 1.37708 * 119.92352 * 180.02562 * 17 16 14 19 19 C 1.39071 * 120.07465 * 0.02562 * 18 17 16 20 20 N 1.39875 * 119.91794 * 179.97438 * 19 18 17 21 21 C 1.34801 * 126.84603 * 353.78103 * 20 19 18 22 22 N 1.30814 * 108.01907 * 179.97438 * 21 20 19 23 23 C 1.33288 * 109.85156 * 359.97438 * 22 21 20 24 24 N 1.30729 * 109.00778 * 359.71803 * 23 22 21 25 25 C 1.39016 * 120.16082 * 359.97438 * 19 18 17 26 26 C 1.50704 * 119.96166 * 179.97438 * 25 19 18 27 27 C 1.37757 * 120.08084 * 359.71989 * 25 19 18 28 28 H 1.09002 * 109.47118 * 59.99928 * 1 2 3 29 29 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47435 * 299.99904 * 1 2 3 31 31 H 1.09000 * 109.47435 * 240.00096 * 2 1 3 32 32 H 1.09008 * 109.46944 * 119.99656 * 2 1 3 33 33 H 0.96998 * 120.00110 * 354.93621 * 8 7 5 34 34 H 0.96996 * 120.00402 * 95.00302 * 13 3 2 35 35 H 1.08001 * 120.03766 * 359.97272 * 17 16 14 36 36 H 1.07996 * 119.95994 * 179.97438 * 18 17 16 37 37 H 1.08000 * 125.98838 * 359.96947 * 21 20 19 38 38 H 1.07994 * 125.49605 * 180.02562 * 23 22 21 39 39 H 1.08997 * 109.47385 * 84.04713 * 26 25 19 40 40 H 1.09002 * 109.46930 * 204.04448 * 26 25 19 41 41 H 1.08998 * 109.46872 * 324.04744 * 26 25 19 42 42 H 1.08001 * 120.04262 * 180.29818 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9853 -0.8339 5 6 3.5402 1.4449 -0.1424 6 1 4.1577 1.8315 0.6549 7 6 4.1245 0.9537 -1.2906 8 7 5.4068 0.6621 -1.3029 9 14 3.0946 0.7025 -2.8287 10 1 3.9524 0.1681 -3.9168 11 1 2.0025 -0.2617 -2.5412 12 1 2.5103 2.0008 -3.2507 13 7 1.6680 2.0919 1.2594 14 6 0.4521 2.6583 1.3921 15 8 -0.3360 2.6299 0.4669 16 6 0.0774 3.3134 2.6615 17 6 0.9821 3.3476 3.7257 18 6 0.6290 3.9589 4.9081 19 6 -0.6265 4.5413 5.0437 20 7 -0.9819 5.1609 6.2464 21 6 -0.2698 5.1728 7.3908 22 7 -0.9432 5.8572 8.2793 23 6 -2.0823 6.2962 7.7443 24 7 -2.1483 5.9010 6.4999 25 6 -1.5292 4.5093 3.9870 26 6 -2.8888 5.1413 4.1391 27 6 -1.1805 3.9050 2.7991 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 5.9568 0.8608 -0.5291 34 1 2.2966 2.1144 1.9977 35 1 1.9568 2.8943 3.6214 36 1 1.3277 3.9853 5.7312 37 1 0.6887 4.7001 7.5469 38 1 -2.8279 6.8875 8.2548 39 1 -2.8188 6.2087 3.9296 40 1 -3.5849 4.6787 3.4394 41 1 -3.2461 4.9937 5.1582 42 1 -1.8805 3.8847 1.9769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183968091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:34 Heat of formation + Delta-G solvation = 69.987410 kcal Electronic energy + Delta-G solvation = -25402.760456 eV Core-core repulsion = 21770.365415 eV Total energy + Delta-G solvation = -3632.395041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.41760 -41.36828 -39.85655 -37.10211 -35.40073 -34.54396 -34.07466 -33.12400 -32.24331 -30.86561 -29.18344 -27.95310 -25.81517 -24.23842 -23.92147 -23.27428 -22.08747 -21.96312 -21.13894 -19.86817 -19.28477 -18.26207 -17.48959 -17.01545 -16.84209 -16.49348 -15.98427 -15.72017 -15.40920 -15.14705 -15.00319 -14.77169 -14.51035 -14.44220 -14.37731 -14.05729 -13.88533 -13.72562 -13.61267 -13.21449 -12.71495 -12.51903 -12.47512 -12.29033 -12.12893 -11.89390 -11.78599 -11.35014 -11.10369 -11.08494 -10.91080 -10.85490 -10.47283 -10.03642 -9.87516 -9.43231 -8.78525 -6.43644 -0.68424 0.14033 0.71096 1.09268 1.45946 1.51316 1.69553 1.79384 1.93193 2.36504 2.42564 2.71635 3.02497 3.27139 3.35196 3.58392 3.72260 3.81439 3.90202 4.08372 4.26000 4.31306 4.35983 4.40786 4.53226 4.60932 4.74195 4.76629 4.84726 4.92036 5.05763 5.10269 5.13725 5.19854 5.21486 5.23624 5.31615 5.42535 5.55499 5.56705 5.63510 5.68496 5.91022 6.01999 6.53404 6.79632 6.92466 7.27404 7.38576 8.61541 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002884 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.444720 B = 9705.414343 C =10324.156945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C 0.251 3.749 4 H 0.022 0.978 5 C -0.612 4.612 6 H 0.043 0.957 7 C -0.004 4.004 8 N -0.929 5.929 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.240 1.240 12 H -0.276 1.276 13 N -0.694 5.694 14 C 0.543 3.457 15 O -0.576 6.576 16 C -0.139 4.139 17 C -0.064 4.064 18 C -0.120 4.120 19 C 0.157 3.843 20 N -0.337 5.337 21 C 0.268 3.732 22 N -0.560 5.560 23 C 0.201 3.799 24 N -0.335 5.335 25 C -0.093 4.093 26 C -0.106 4.106 27 C -0.050 4.050 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.259 0.741 34 H 0.403 0.597 35 H 0.156 0.844 36 H 0.180 0.820 37 H 0.263 0.737 38 H 0.251 0.749 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.284 7.734 18.184 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.178 4.178 3 C 0.147 3.853 4 H 0.040 0.960 5 C -0.650 4.650 6 H 0.062 0.938 7 C -0.205 4.205 8 N -0.564 5.564 9 Si 0.890 3.110 10 H -0.211 1.211 11 H -0.164 1.164 12 H -0.201 1.201 13 N -0.343 5.343 14 C 0.331 3.669 15 O -0.458 6.458 16 C -0.143 4.143 17 C -0.083 4.083 18 C -0.140 4.140 19 C 0.064 3.936 20 N -0.120 5.120 21 C -0.026 4.026 22 N -0.286 5.286 23 C -0.100 4.100 24 N -0.160 5.160 25 C -0.096 4.096 26 C -0.163 4.163 27 C -0.070 4.070 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.240 0.760 35 H 0.174 0.826 36 H 0.198 0.802 37 H 0.278 0.722 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.249 7.372 15.867 22.564 hybrid contribution 0.919 0.579 1.587 1.923 sum -13.331 7.951 17.454 23.358 Atomic orbital electron populations 1.21770 0.95649 1.00363 1.01374 1.22317 0.95300 0.98287 1.01894 1.18788 0.93640 0.89758 0.83152 0.96005 1.22273 0.91370 1.46618 1.04695 0.93849 1.26748 0.97724 0.92370 1.03646 1.70978 1.07759 1.43181 1.34489 0.83803 0.75248 0.78619 0.73283 1.21089 1.16432 1.20126 1.46004 1.15118 1.55774 1.17377 1.18593 0.81988 0.78465 0.87803 1.90722 1.51520 1.61202 1.42381 1.20094 0.96710 1.03094 0.94392 1.21362 0.99361 0.96530 0.91047 1.21037 0.94034 0.99114 0.99809 1.17771 0.95030 0.97111 0.83734 1.47744 1.15785 1.38486 1.10001 1.27121 0.99752 0.95340 0.80427 1.70686 1.07579 1.17782 1.32523 1.26955 0.95975 0.97817 0.89301 1.78286 1.03755 1.14978 1.18968 1.19772 0.97694 1.00140 0.91957 1.20987 0.91128 1.00073 1.04097 1.21053 0.95222 0.94016 0.96694 0.94115 0.92522 0.93400 0.91950 0.92452 0.93184 0.76035 0.82636 0.80245 0.72177 0.73362 0.91038 0.91245 0.89199 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.53 71.98 0.61 -4.47 16 2 C -0.14 -5.87 5.25 30.59 0.16 -5.70 16 3 C 0.25 11.47 1.81 44.24 0.08 11.55 16 4 H 0.02 1.11 6.37 -2.39 -0.02 1.10 16 5 C -0.61 -32.12 9.03 25.60 0.23 -31.89 16 6 H 0.04 2.39 7.97 -2.91 -0.02 2.36 16 7 C 0.00 -0.22 5.32 84.66 0.45 0.23 16 8 N -0.93 -54.97 13.70 21.45 0.29 -54.68 16 9 Si 1.07 49.21 26.25 68.60 1.80 51.01 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.24 -9.96 5.52 99.48 0.55 -9.41 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.69 -26.15 4.98 -449.13 -2.24 -28.39 16 14 C 0.54 19.64 6.37 86.73 0.55 20.19 16 15 O -0.58 -24.51 13.47 -3.94 -0.05 -24.56 16 16 C -0.14 -3.82 5.88 -20.08 -0.12 -3.94 16 17 C -0.06 -1.28 9.53 22.50 0.21 -1.06 16 18 C -0.12 -1.81 9.45 22.34 0.21 -1.60 16 19 C 0.16 3.02 6.67 38.24 0.26 3.28 16 20 N -0.34 -6.06 3.79 -191.17 -0.72 -6.78 16 21 C 0.27 3.63 11.96 180.25 2.16 5.79 16 22 N -0.56 -9.49 11.19 -203.69 -2.28 -11.77 16 23 C 0.20 3.13 13.03 180.75 2.35 5.49 16 24 N -0.33 -6.44 8.84 -61.21 -0.54 -6.98 16 25 C -0.09 -2.08 5.89 -19.79 -0.12 -2.20 16 26 C -0.11 -2.12 8.74 71.24 0.62 -1.50 16 27 C -0.05 -1.30 9.21 22.51 0.21 -1.09 16 28 H 0.04 1.62 7.89 -2.39 -0.02 1.60 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.81 5.63 -2.39 -0.01 1.79 16 31 H 0.06 2.74 4.42 -2.39 -0.01 2.73 16 32 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.26 15.28 8.73 -92.71 -0.81 14.47 16 34 H 0.40 13.06 6.55 -92.71 -0.61 12.45 16 35 H 0.16 2.61 6.39 -2.91 -0.02 2.60 16 36 H 0.18 1.11 6.82 -2.91 -0.02 1.09 16 37 H 0.26 0.93 7.12 -2.91 -0.02 0.91 16 38 H 0.25 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 41 H 0.09 1.84 5.71 -2.39 -0.01 1.83 16 42 H 0.14 3.71 7.64 -2.91 -0.02 3.69 16 Total: -1.00 -71.81 340.39 4.41 -67.40 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.27 Total: 21.70 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 7.88 Total: -6.94 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -5.49 Total: -108.60 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.80 Total: 51.01 kcal Total: -71.81 4.41 -67.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183968091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.387 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds