Wall clock time and date at job start Tue Mar 31 2020 10:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47493 * 2 1 4 4 N 1.46492 * 109.47413 * 179.97438 * 3 2 1 5 5 C 1.45649 * 117.70699 * 89.99828 * 4 3 2 6 6 C 1.52990 * 110.77689 * 158.09839 * 5 4 3 7 7 N 1.47265 * 108.18663 * 46.72607 * 6 5 4 8 8 C 1.34770 * 121.35413 * 118.47428 * 7 6 5 9 9 O 1.21284 * 120.00450 * 174.50195 * 8 7 6 10 10 C 1.50698 * 120.00154 * 354.50214 * 8 7 6 11 11 S 1.81003 * 109.47429 * 179.97438 * 10 8 7 12 12 C 1.76200 * 100.00158 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99767 * 359.97438 * 12 11 10 14 14 C 1.38793 * 120.00151 * 179.97438 * 12 11 10 15 15 N 1.31635 * 120.00047 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00231 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47072 * 90.00083 * 16 14 12 18 18 H 1.48497 * 109.47457 * 209.99821 * 16 14 12 19 19 H 1.48498 * 109.47182 * 330.00196 * 16 14 12 20 20 C 1.47054 * 117.29450 * 298.49739 * 7 6 5 21 21 C 1.53001 * 109.56621 * 162.55856 * 20 7 6 22 22 C 1.52998 * 109.56642 * 282.79689 * 20 7 6 23 23 C 1.33376 * 117.70740 * 269.99779 * 4 3 2 24 24 O 1.21284 * 118.48713 * 4.29990 * 23 4 3 25 25 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47297 * 300.00519 * 1 2 3 27 27 H 1.09003 * 109.46865 * 60.00270 * 1 2 3 28 28 H 1.09003 * 109.47238 * 239.99710 * 2 1 3 29 29 H 1.09003 * 109.46865 * 119.99730 * 2 1 3 30 30 H 1.08994 * 109.47273 * 59.99466 * 3 2 1 31 31 H 1.09003 * 109.46845 * 299.99742 * 3 2 1 32 32 H 1.09005 * 109.21700 * 37.76498 * 5 4 3 33 33 H 1.08995 * 109.22098 * 278.43304 * 5 4 3 34 34 H 1.08999 * 109.72022 * 166.40286 * 6 5 4 35 35 H 1.09000 * 109.72159 * 287.01231 * 6 5 4 36 36 H 1.09005 * 109.46993 * 300.00033 * 10 8 7 37 37 H 1.09001 * 109.47048 * 59.99834 * 10 8 7 38 38 H 0.96999 * 119.99809 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47304 * 70.56154 * 21 20 7 40 40 H 1.09004 * 109.46837 * 190.55944 * 21 20 7 41 41 H 1.09000 * 109.47459 * 310.55703 * 21 20 7 42 42 H 1.08999 * 109.47056 * 60.00258 * 22 20 7 43 43 H 1.09001 * 109.46666 * 179.97438 * 22 20 7 44 44 H 1.08991 * 109.47115 * 299.99879 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1827 1.4422 -1.2886 6 6 5.6099 1.9758 -1.1515 7 7 6.2372 1.3180 0.0072 8 6 7.3328 0.5458 -0.1330 9 8 7.8880 0.0971 0.8475 10 6 7.8680 0.2397 -1.5081 11 16 9.3346 -0.8113 -1.3646 12 6 9.7386 -1.0071 -3.0684 13 1 9.1304 -0.5344 -3.8254 14 6 10.8384 -1.7690 -3.4378 15 7 11.5800 -2.3448 -2.5151 16 14 11.2663 -1.9772 -5.2441 17 1 12.1899 -0.8921 -5.6623 18 1 11.9237 -3.2929 -5.4487 19 1 10.0256 -1.9120 -6.0574 20 6 5.6193 1.5377 1.3235 21 6 6.1099 0.4708 2.3043 22 6 6.0001 2.9255 1.8431 23 6 4.1246 1.4427 1.1817 24 8 3.4520 1.3629 2.1878 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6294 2.0725 -1.9849 33 1 4.2160 0.4241 -1.6762 34 1 6.1761 1.7481 -2.0547 35 1 5.5860 3.0541 -0.9946 36 1 7.1044 -0.2787 -2.0881 37 1 8.1357 1.1700 -2.0091 38 1 12.3489 -2.8769 -2.7733 39 1 7.1582 0.6507 2.5423 40 1 5.5169 0.5169 3.2177 41 1 6.0041 -0.5151 1.8517 42 1 5.6461 3.6844 1.1453 43 1 5.5409 3.0867 2.8184 44 1 7.0839 2.9940 1.9355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186441433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:31 Heat of formation + Delta-G solvation = -58.778772 kcal Electronic energy + Delta-G solvation = -25057.917220 eV Core-core repulsion = 21523.089658 eV Total energy + Delta-G solvation = -3534.827562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32010 -39.16112 -36.78809 -36.00521 -33.64312 -32.63144 -32.47211 -29.52777 -28.55303 -27.31674 -26.80347 -25.52668 -24.19470 -22.91098 -21.68526 -20.31921 -18.20937 -17.72771 -17.44609 -16.86543 -16.03082 -15.84585 -15.39220 -15.19993 -14.84960 -14.83530 -14.20355 -14.11402 -13.79121 -13.62654 -13.20001 -12.95925 -12.82678 -12.64767 -12.45794 -12.33338 -12.22636 -12.05353 -11.90132 -11.75844 -11.64950 -11.50381 -11.27553 -11.09967 -11.05161 -10.90007 -10.80932 -10.16304 -9.84261 -9.10902 -9.00535 -8.95446 -8.63536 -8.28506 -6.55288 -6.25969 -3.97116 2.42172 2.53420 2.80244 2.96131 3.19003 3.20698 3.26753 3.48362 4.14455 4.15619 4.41313 4.60328 4.71286 4.76780 4.83875 4.87820 4.94965 5.01999 5.04427 5.09471 5.16138 5.25917 5.39390 5.46846 5.50341 5.51403 5.57695 5.62485 5.75907 5.77096 5.87292 5.87738 5.94341 5.95572 6.01708 6.12989 6.16892 6.36031 6.62923 7.16868 7.40831 7.54916 7.93816 8.30334 8.45492 9.19385 10.81362 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.003423 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.762657 B = 8178.014899 C = 8999.608450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.108 3.892 4 N -0.603 5.603 5 C 0.097 3.903 6 C 0.093 3.907 7 N -0.621 5.621 8 C 0.541 3.459 9 O -0.500 6.500 10 C -0.152 4.152 11 S -0.057 6.057 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.165 3.835 21 C -0.133 4.133 22 C -0.147 4.147 23 C 0.521 3.479 24 O -0.538 6.538 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.014 10.902 1.836 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.015 4.015 4 N -0.335 5.335 5 C -0.027 4.027 6 C -0.031 4.031 7 N -0.359 5.359 8 C 0.329 3.671 9 O -0.373 6.373 10 C -0.303 4.303 11 S 0.169 5.831 12 C -0.685 4.685 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 C 0.077 3.923 21 C -0.190 4.190 22 C -0.206 4.206 23 C 0.308 3.692 24 O -0.415 6.415 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.332 10.055 3.866 21.263 hybrid contribution -0.439 0.383 -2.643 2.707 sum -18.771 10.438 1.223 21.513 Atomic orbital electron populations 1.21676 0.95094 1.01990 1.01773 1.21849 0.96175 0.97034 1.02767 1.21640 0.79205 0.97496 1.03160 1.47293 1.07200 1.73031 1.05941 1.21858 0.93426 1.02662 0.84774 1.22076 0.92379 0.97766 0.90886 1.48434 1.29748 1.51012 1.06748 1.20308 0.78553 0.76689 0.91541 1.90711 1.56734 1.50392 1.39508 1.23597 1.05501 1.05419 0.95741 1.85438 1.25722 1.61068 1.10849 1.22844 1.16277 1.37530 0.91801 0.90938 1.24989 0.95157 0.94685 0.98706 1.70014 1.16400 1.30803 1.32968 0.86172 0.78642 0.77790 0.82916 1.20257 1.20750 1.19692 1.20697 0.87642 0.98851 0.85125 1.22157 1.03498 0.96641 0.96736 1.22070 1.03265 0.93632 1.01600 1.20317 0.90430 0.75564 0.82934 1.90694 1.65424 1.49670 1.35688 0.92447 0.92515 0.92717 0.91878 0.91377 0.89670 0.90562 0.89347 0.90925 0.87108 0.90234 0.89261 0.89185 0.92136 0.88339 0.92024 0.91950 0.92403 0.90618 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.15 0.37 -0.71 16 2 C -0.14 -1.29 6.25 -26.73 -0.17 -1.45 16 3 C 0.11 0.97 5.17 -4.05 -0.02 0.95 16 4 N -0.60 -6.44 2.80 -174.89 -0.49 -6.93 16 5 C 0.10 0.81 6.57 -4.51 -0.03 0.78 16 6 C 0.09 0.87 6.31 -3.63 -0.02 0.85 16 7 N -0.62 -8.45 2.62 -159.24 -0.42 -8.86 16 8 C 0.54 9.59 7.41 -10.99 -0.08 9.51 16 9 O -0.50 -10.54 12.05 5.55 0.07 -10.47 16 10 C -0.15 -2.86 4.57 36.00 0.16 -2.70 16 11 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 12 C -0.54 -14.74 9.50 30.94 0.29 -14.45 16 13 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 16 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C 0.16 2.25 0.97 -132.79 -0.13 2.12 16 21 C -0.13 -2.07 6.93 37.16 0.26 -1.81 16 22 C -0.15 -1.71 8.65 37.16 0.32 -1.38 16 23 C 0.52 7.05 6.34 -11.73 -0.07 6.98 16 24 O -0.54 -8.61 15.45 5.55 0.09 -8.52 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.87 7.23 -51.93 -0.38 0.50 16 31 H 0.08 0.49 7.81 -51.93 -0.41 0.08 16 32 H 0.09 0.47 7.85 -51.93 -0.41 0.06 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 0.96 6.05 -51.93 -0.31 0.64 16 35 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 36 H 0.09 1.55 8.07 -51.91 -0.42 1.13 16 37 H 0.09 1.53 7.60 -51.91 -0.39 1.14 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.10 1.65 6.35 -51.93 -0.33 1.32 16 40 H 0.06 0.91 7.56 -51.93 -0.39 0.52 16 41 H 0.06 1.09 7.39 -51.93 -0.38 0.70 16 42 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -33.98 363.87 -8.12 -42.10 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.13 Total: -0.68 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 0.78 Total: 0.65 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.17 Total: -40.67 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.15 Total: -18.99 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.98 -8.12 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186441433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.683 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds