Wall clock time and date at job start Tue Mar 31 2020 10:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47493 * 2 1 4 4 N 1.46492 * 109.47413 * 179.97438 * 3 2 1 5 5 C 1.45649 * 117.70699 * 89.99828 * 4 3 2 6 6 C 1.52990 * 110.77689 * 158.09839 * 5 4 3 7 7 N 1.47265 * 108.18663 * 46.72607 * 6 5 4 8 8 C 1.34770 * 121.35413 * 118.47428 * 7 6 5 9 9 O 1.21284 * 120.00450 * 174.50195 * 8 7 6 10 10 C 1.50698 * 120.00154 * 354.50214 * 8 7 6 11 11 S 1.81003 * 109.47429 * 179.97438 * 10 8 7 12 12 C 1.76200 * 100.00158 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99767 * 359.97438 * 12 11 10 14 14 C 1.38793 * 120.00151 * 179.97438 * 12 11 10 15 15 N 1.31635 * 120.00047 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00231 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47072 * 90.00083 * 16 14 12 18 18 H 1.48497 * 109.47457 * 209.99821 * 16 14 12 19 19 H 1.48498 * 109.47182 * 330.00196 * 16 14 12 20 20 C 1.47054 * 117.29450 * 298.49739 * 7 6 5 21 21 C 1.53001 * 109.56621 * 162.55856 * 20 7 6 22 22 C 1.52998 * 109.56642 * 282.79689 * 20 7 6 23 23 C 1.33376 * 117.70740 * 269.99779 * 4 3 2 24 24 O 1.21284 * 118.48713 * 4.29990 * 23 4 3 25 25 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47297 * 300.00519 * 1 2 3 27 27 H 1.09003 * 109.46865 * 60.00270 * 1 2 3 28 28 H 1.09003 * 109.47238 * 239.99710 * 2 1 3 29 29 H 1.09003 * 109.46865 * 119.99730 * 2 1 3 30 30 H 1.08994 * 109.47273 * 59.99466 * 3 2 1 31 31 H 1.09003 * 109.46845 * 299.99742 * 3 2 1 32 32 H 1.09005 * 109.21700 * 37.76498 * 5 4 3 33 33 H 1.08995 * 109.22098 * 278.43304 * 5 4 3 34 34 H 1.08999 * 109.72022 * 166.40286 * 6 5 4 35 35 H 1.09000 * 109.72159 * 287.01231 * 6 5 4 36 36 H 1.09005 * 109.46993 * 300.00033 * 10 8 7 37 37 H 1.09001 * 109.47048 * 59.99834 * 10 8 7 38 38 H 0.96999 * 119.99809 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47304 * 70.56154 * 21 20 7 40 40 H 1.09004 * 109.46837 * 190.55944 * 21 20 7 41 41 H 1.09000 * 109.47459 * 310.55703 * 21 20 7 42 42 H 1.08999 * 109.47056 * 60.00258 * 22 20 7 43 43 H 1.09001 * 109.46666 * 179.97438 * 22 20 7 44 44 H 1.08991 * 109.47115 * 299.99879 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1827 1.4422 -1.2886 6 6 5.6099 1.9758 -1.1515 7 7 6.2372 1.3180 0.0072 8 6 7.3328 0.5458 -0.1330 9 8 7.8880 0.0971 0.8475 10 6 7.8680 0.2397 -1.5081 11 16 9.3346 -0.8113 -1.3646 12 6 9.7386 -1.0071 -3.0684 13 1 9.1304 -0.5344 -3.8254 14 6 10.8384 -1.7690 -3.4378 15 7 11.5800 -2.3448 -2.5151 16 14 11.2663 -1.9772 -5.2441 17 1 12.1899 -0.8921 -5.6623 18 1 11.9237 -3.2929 -5.4487 19 1 10.0256 -1.9120 -6.0574 20 6 5.6193 1.5377 1.3235 21 6 6.1099 0.4708 2.3043 22 6 6.0001 2.9255 1.8431 23 6 4.1246 1.4427 1.1817 24 8 3.4520 1.3629 2.1878 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6294 2.0725 -1.9849 33 1 4.2160 0.4241 -1.6762 34 1 6.1761 1.7481 -2.0547 35 1 5.5860 3.0541 -0.9946 36 1 7.1044 -0.2787 -2.0881 37 1 8.1357 1.1700 -2.0091 38 1 12.3489 -2.8769 -2.7733 39 1 7.1582 0.6507 2.5423 40 1 5.5169 0.5169 3.2177 41 1 6.0041 -0.5151 1.8517 42 1 5.6461 3.6844 1.1453 43 1 5.5409 3.0867 2.8184 44 1 7.0839 2.9940 1.9355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186441433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:31 Heat of formation + Delta-G solvation = -80.719700 kcal Electronic energy + Delta-G solvation = -25058.868650 eV Core-core repulsion = 21523.089658 eV Total energy + Delta-G solvation = -3535.778992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37983 -40.39850 -37.76498 -37.10807 -34.56409 -34.50572 -33.69986 -30.63958 -29.74681 -28.46114 -27.66426 -27.56722 -25.09791 -23.83337 -22.51327 -21.53401 -19.81567 -18.86578 -18.72238 -17.95747 -17.08586 -16.89250 -16.85363 -16.57279 -16.27610 -15.88987 -15.60738 -15.19588 -14.97574 -14.66603 -14.47150 -14.18421 -13.99139 -13.65288 -13.47338 -13.29766 -13.25727 -13.14244 -13.00700 -12.98013 -12.87132 -12.82943 -12.57704 -12.43336 -12.40681 -12.16530 -11.71764 -11.61074 -11.26420 -11.11834 -10.35650 -10.22493 -9.89542 -9.71058 -8.63969 -8.32324 -6.09897 1.21269 1.37770 1.44415 1.44813 1.54001 1.56220 1.79268 2.00464 2.29323 3.02413 3.20866 3.26670 3.57108 3.74519 3.82413 3.89608 4.01163 4.04464 4.11882 4.24437 4.30265 4.35954 4.47747 4.52516 4.57274 4.60721 4.63676 4.67932 4.72005 4.76600 4.82589 4.90874 5.08476 5.09722 5.14930 5.19569 5.28324 5.39607 5.44661 5.49038 6.15852 6.22370 6.30233 6.93700 7.09463 7.12328 8.76665 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.003423 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.762657 B = 8178.014899 C = 8999.608450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.107 3.893 4 N -0.597 5.597 5 C 0.093 3.907 6 C 0.082 3.918 7 N -0.610 5.610 8 C 0.539 3.461 9 O -0.545 6.545 10 C -0.123 4.123 11 S -0.152 6.152 12 C -0.542 4.542 13 H 0.086 0.914 14 C 0.013 3.987 15 N -0.913 5.913 16 Si 0.997 3.003 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.255 1.255 20 C 0.162 3.838 21 C -0.124 4.124 22 C -0.141 4.141 23 C 0.518 3.482 24 O -0.571 6.571 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.270 0.730 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.189 13.047 -1.351 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.015 4.015 4 N -0.328 5.328 5 C -0.030 4.030 6 C -0.039 4.039 7 N -0.347 5.347 8 C 0.328 3.672 9 O -0.422 6.422 10 C -0.274 4.274 11 S 0.075 5.925 12 C -0.690 4.690 13 H 0.104 0.896 14 C -0.192 4.192 15 N -0.549 5.549 16 Si 0.819 3.181 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.179 1.179 20 C 0.074 3.926 21 C -0.181 4.181 22 C -0.199 4.199 23 C 0.305 3.695 24 O -0.450 6.450 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.562 12.237 0.632 23.936 hybrid contribution 0.113 -0.241 -1.606 1.628 sum -20.449 11.996 -0.974 23.728 Atomic orbital electron populations 1.21646 0.93493 1.02285 1.02659 1.21810 0.97584 0.97021 1.01154 1.21802 0.77983 0.97349 1.04383 1.47398 1.08141 1.71351 1.05870 1.22110 0.93055 1.03635 0.84159 1.22524 0.92839 0.99073 0.89497 1.48354 1.28309 1.49712 1.08286 1.20158 0.79473 0.77111 0.90501 1.90714 1.58550 1.52431 1.40477 1.23398 1.02130 1.04822 0.97052 1.85674 1.30772 1.63938 1.12102 1.23200 1.16512 1.37370 0.91899 0.89555 1.26114 0.94994 0.94193 1.03903 1.70191 1.17149 1.31960 1.35644 0.84970 0.78902 0.77688 0.76537 1.19360 1.20748 1.17900 1.20710 0.88117 0.99172 0.84614 1.21969 1.02568 0.96151 0.97437 1.22017 1.02816 0.92723 1.02335 1.20193 0.89969 0.75748 0.83618 1.90684 1.65792 1.51486 1.37044 0.92529 0.92819 0.90584 0.91462 0.94980 0.91071 0.86606 0.84702 0.91189 0.85782 0.87443 0.87236 0.86635 0.92130 0.89979 0.91878 0.94625 0.89966 0.90411 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.14 -2.32 6.25 30.59 0.19 -2.13 16 3 C 0.11 1.61 5.17 86.38 0.45 2.06 16 4 N -0.60 -11.09 2.80 -826.39 -2.32 -13.41 16 5 C 0.09 1.14 6.57 86.54 0.57 1.71 16 6 C 0.08 1.21 6.31 86.23 0.54 1.76 16 7 N -0.61 -15.59 2.62 -776.11 -2.03 -17.62 16 8 C 0.54 19.00 7.41 87.66 0.65 19.65 16 9 O -0.54 -23.94 12.05 -3.04 -0.04 -23.98 16 10 C -0.12 -4.48 4.57 71.24 0.33 -4.16 16 11 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 12 C -0.54 -29.64 9.50 67.95 0.65 -29.00 16 13 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 14 C 0.01 0.70 5.49 84.86 0.47 1.16 16 15 N -0.91 -55.18 13.22 21.65 0.29 -54.90 16 16 Si 1.00 42.23 29.55 68.60 2.03 44.26 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 C 0.16 4.32 0.97 2.67 0.00 4.32 16 21 C -0.12 -4.06 6.93 71.98 0.50 -3.56 16 22 C -0.14 -3.07 8.65 71.98 0.62 -2.45 16 23 C 0.52 13.47 6.34 87.79 0.56 14.02 16 24 O -0.57 -18.27 15.45 -3.04 -0.05 -18.32 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.33 7.23 -2.39 -0.02 1.31 16 31 H 0.12 0.88 7.81 -2.39 -0.02 0.86 16 32 H 0.14 0.53 7.85 -2.38 -0.02 0.51 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 1.55 6.05 -2.39 -0.01 1.54 16 35 H 0.11 1.09 7.52 -2.39 -0.02 1.07 16 36 H 0.11 3.55 8.07 -2.39 -0.02 3.53 16 37 H 0.12 3.62 7.60 -2.40 -0.02 3.61 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.08 2.95 6.35 -2.39 -0.02 2.94 16 40 H 0.06 1.99 7.56 -2.38 -0.02 1.97 16 41 H 0.03 1.32 7.39 -2.39 -0.02 1.30 16 42 H 0.08 1.38 7.51 -2.39 -0.02 1.37 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.75 363.87 3.93 -74.82 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.98 Total: 16.11 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.23 Total: 2.31 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -4.06 Total: -85.92 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.08 Total: -42.29 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -78.75 3.93 -74.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186441433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.900 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds