Wall clock time and date at job start Tue Mar 31 2020 10:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47387 * 2 1 4 4 H 1.08997 * 109.46773 * 55.00116 * 3 2 1 5 5 C 1.50694 * 109.46987 * 174.99930 * 3 2 1 6 6 H 1.08001 * 119.99887 * 119.72870 * 5 3 2 7 7 C 1.37879 * 120.00330 * 299.99773 * 5 3 2 8 8 N 1.31511 * 119.99970 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99766 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47136 * 90.00220 * 9 7 5 11 11 H 1.48500 * 109.47198 * 209.99930 * 9 7 5 12 12 H 1.48501 * 109.47489 * 329.99906 * 9 7 5 13 13 N 1.46496 * 109.46778 * 294.99946 * 3 2 1 14 14 C 1.34777 * 120.00054 * 85.00172 * 13 3 2 15 15 O 1.21582 * 120.00057 * 359.97438 * 14 13 3 16 16 N 1.34784 * 120.00166 * 179.97438 * 14 13 3 17 17 C 1.39947 * 119.99779 * 175.38559 * 16 14 13 18 18 C 1.38927 * 120.04080 * 35.09848 * 17 16 14 19 19 C 1.38136 * 120.06280 * 179.97438 * 18 17 16 20 20 C 1.38178 * 120.13728 * 0.02562 * 19 18 17 21 21 C 1.38859 * 120.07556 * 359.96047 * 20 19 18 22 22 N 1.40181 * 120.03432 * 180.02562 * 21 20 19 23 23 C 1.35227 * 126.05617 * 4.99281 * 22 21 20 24 24 C 1.35319 * 107.71719 * 179.97438 * 23 22 21 25 25 C 1.39915 * 107.92752 * 0.02562 * 24 23 22 26 26 N 1.30873 * 108.24790 * 359.75886 * 25 24 23 27 27 C 1.38732 * 120.03350 * 214.82224 * 17 16 14 28 28 H 1.08995 * 109.47081 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46646 * 300.00416 * 1 2 3 30 30 H 1.09007 * 109.46786 * 59.99589 * 1 2 3 31 31 H 1.09006 * 109.47101 * 240.00021 * 2 1 3 32 32 H 1.08998 * 109.46997 * 119.99877 * 2 1 3 33 33 H 0.97002 * 120.00063 * 180.02562 * 8 7 5 34 34 H 0.97008 * 120.00215 * 264.99556 * 13 3 2 35 35 H 0.96993 * 119.99584 * 355.38645 * 16 14 13 36 36 H 1.08006 * 119.96812 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.92881 * 180.02562 * 19 18 17 38 38 H 1.08005 * 119.96264 * 179.97438 * 20 19 18 39 39 H 1.08005 * 126.14026 * 359.97438 * 23 22 21 40 40 H 1.07993 * 126.03114 * 180.02562 * 24 23 22 41 41 H 1.08005 * 125.87583 * 180.02562 * 25 24 23 42 42 H 1.08008 * 120.06791 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1474 1.8849 -0.6544 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1089 2.5701 10 1 2.8756 -1.3273 2.2634 11 1 3.7937 0.2348 3.8751 12 1 1.7877 0.8074 2.6387 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3414 2.6319 -0.4321 16 7 0.0789 3.2674 -2.5185 17 6 -1.2178 3.7708 -2.6725 18 6 -1.8820 4.3259 -1.5859 19 6 -3.1617 4.8235 -1.7375 20 6 -3.7852 4.7704 -2.9694 21 6 -3.1265 4.2170 -4.0595 22 7 -3.7598 4.1641 -5.3090 23 6 -4.9646 4.6969 -5.6139 24 6 -5.2154 4.4297 -6.9166 25 6 -4.1290 3.7094 -7.4253 26 7 -3.2543 3.5540 -6.4643 27 6 -1.8392 3.7214 -3.9119 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8771 0.4818 2.1129 34 1 2.2721 2.1231 -1.9978 35 1 0.7211 3.3523 -3.2404 36 1 -1.3973 4.3685 -0.6216 37 1 -3.6758 5.2549 -0.8914 38 1 -4.7860 5.1598 -3.0847 39 1 -5.6108 5.2386 -4.9390 40 1 -6.0981 4.7209 -7.4663 41 1 -4.0277 3.3480 -8.4380 42 1 -1.3234 3.2940 -4.7592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274660488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:36 Heat of formation + Delta-G solvation = 92.704485 kcal Electronic energy + Delta-G solvation = -25239.096077 eV Core-core repulsion = 21607.686122 eV Total energy + Delta-G solvation = -3631.409955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73078 -40.39277 -38.69218 -35.89744 -34.53733 -33.30963 -32.40618 -31.58166 -30.81100 -29.60678 -28.76449 -27.36866 -23.88665 -23.27708 -22.62524 -21.76757 -20.86396 -20.37467 -19.87046 -18.55736 -18.40475 -16.58380 -16.40566 -16.14495 -15.62768 -15.44154 -15.30391 -14.74417 -14.57543 -14.22350 -13.87637 -13.66328 -13.47469 -13.23685 -13.07191 -12.86864 -12.46259 -12.01734 -12.00626 -11.84926 -11.68395 -11.13419 -10.96461 -10.93687 -10.69179 -10.65265 -10.11417 -9.93989 -9.65122 -9.44230 -9.36286 -9.25126 -8.80312 -8.49863 -8.19516 -7.91842 -6.24410 -4.27362 0.71656 1.17064 2.02687 2.13522 2.50962 2.96516 3.21678 3.33714 3.38396 3.45254 3.82501 4.28412 4.29252 4.46731 4.64201 4.76702 4.86134 5.05925 5.09267 5.22533 5.27740 5.36686 5.51797 5.58457 5.65343 5.95877 5.98911 6.01953 6.14668 6.22131 6.27130 6.36639 6.43240 6.61282 6.68049 6.77505 6.82448 6.92870 7.04764 7.08541 7.25180 7.38086 7.42405 7.47560 8.21602 8.53905 8.73823 8.99981 9.36073 10.87542 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.002696 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.484880 B =10381.492196 C =10649.009023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.260 3.740 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.709 5.709 14 C 0.696 3.304 15 O -0.576 6.576 16 N -0.694 5.694 17 C 0.205 3.795 18 C -0.127 4.127 19 C -0.075 4.075 20 C -0.165 4.165 21 C 0.170 3.830 22 N -0.316 5.316 23 C 0.054 3.946 24 C -0.267 4.267 25 C 0.050 3.950 26 N -0.289 5.289 27 C -0.154 4.154 28 H 0.030 0.970 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.406 0.594 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.177 0.823 40 H 0.152 0.848 41 H 0.188 0.812 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.586 8.120 -13.545 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.360 5.360 14 C 0.397 3.603 15 O -0.454 6.454 16 N -0.341 5.341 17 C 0.108 3.892 18 C -0.148 4.148 19 C -0.094 4.094 20 C -0.186 4.186 21 C 0.078 3.922 22 N -0.092 5.092 23 C -0.089 4.089 24 C -0.296 4.296 25 C -0.137 4.137 26 N -0.109 5.109 27 C -0.177 4.177 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.241 0.759 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.194 0.806 40 H 0.170 0.830 41 H 0.205 0.795 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.840 7.472 -12.119 23.615 hybrid contribution -0.621 -0.208 -0.368 0.752 sum -19.461 7.264 -12.488 24.237 Atomic orbital electron populations 1.21852 0.96831 0.98956 1.02287 1.22318 0.94461 0.99996 1.01115 1.19088 0.95474 0.88220 0.81624 0.93120 1.21028 0.88511 1.40089 1.07820 0.90177 1.24819 0.94880 0.95096 0.97667 1.69861 1.08696 1.44365 1.29853 0.86901 0.80964 0.79997 0.80864 1.20223 1.22149 1.18373 1.45462 1.13436 1.58241 1.18867 1.16030 0.83524 0.78580 0.82187 1.90882 1.51808 1.64773 1.37950 1.42798 1.11795 1.61132 1.18413 1.17248 0.85011 0.93804 0.93180 1.21553 0.95628 0.97407 1.00165 1.20853 0.94473 0.97967 0.96133 1.20684 1.00835 1.05215 0.91895 1.17139 0.92478 1.01157 0.81469 1.45895 1.14224 1.41376 1.07703 1.22641 0.88683 0.99823 0.97741 1.21585 1.03062 1.10206 0.94744 1.24069 0.92206 0.98242 0.99144 1.77481 1.22820 1.18994 0.91561 1.20468 0.93775 1.05361 0.98128 0.95089 0.92821 0.92990 0.92321 0.92707 0.92222 0.77354 0.75851 0.83104 0.84750 0.85554 0.80558 0.82992 0.79502 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.16 0.32 -2.55 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.21 16 3 C 0.26 5.97 1.83 -69.08 -0.13 5.85 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -14.15 9.31 -34.44 -0.32 -14.47 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 9 Si 0.88 21.43 24.41 -169.99 -4.15 17.28 16 10 H -0.28 -6.51 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 13 N -0.71 -13.46 5.03 -59.82 -0.30 -13.76 16 14 C 0.70 12.60 6.98 -86.91 -0.61 11.99 16 15 O -0.58 -11.97 10.91 5.29 0.06 -11.91 16 16 N -0.69 -9.85 5.34 -14.24 -0.08 -9.93 16 17 C 0.21 2.87 6.30 -83.71 -0.53 2.34 16 18 C -0.13 -1.76 8.69 -39.36 -0.34 -2.10 16 19 C -0.07 -0.82 10.03 -39.64 -0.40 -1.22 16 20 C -0.16 -1.70 9.45 -39.37 -0.37 -2.07 16 21 C 0.17 2.08 6.68 -83.62 -0.56 1.52 16 22 N -0.32 -3.74 3.80 -10.72 -0.04 -3.78 16 23 C 0.05 0.48 10.79 -17.10 -0.18 0.30 16 24 C -0.27 -2.16 10.81 -39.99 -0.43 -2.59 16 25 C 0.05 0.47 12.02 -17.33 -0.21 0.26 16 26 N -0.29 -3.61 11.88 30.64 0.36 -3.25 16 27 C -0.15 -2.02 9.58 -39.22 -0.38 -2.39 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 30 H 0.05 1.05 5.64 -51.92 -0.29 0.75 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.27 3.21 -51.93 -0.17 1.10 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.39 6.53 8.56 -40.82 -0.35 6.18 16 35 H 0.41 4.56 8.84 -40.82 -0.36 4.20 16 36 H 0.15 2.39 6.22 -52.48 -0.33 2.06 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.13 0.92 6.76 -52.48 -0.35 0.57 16 39 H 0.18 0.95 7.06 -52.48 -0.37 0.58 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.19 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.14 1.77 7.70 -52.48 -0.40 1.37 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -32.73 342.54 -7.67 -40.40 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.09 Total: 11.32 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -4.37 Total: -6.25 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.72 Total: -56.00 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.15 Total: 17.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.73 -7.67 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274660488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.107 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds