Wall clock time and date at job start Tue Mar 31 2020 10:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47387 * 2 1 4 4 H 1.08997 * 109.46773 * 55.00116 * 3 2 1 5 5 C 1.50694 * 109.46987 * 174.99930 * 3 2 1 6 6 H 1.08001 * 119.99887 * 119.72870 * 5 3 2 7 7 C 1.37879 * 120.00330 * 299.99773 * 5 3 2 8 8 N 1.31511 * 119.99970 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99766 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47136 * 90.00220 * 9 7 5 11 11 H 1.48500 * 109.47198 * 209.99930 * 9 7 5 12 12 H 1.48501 * 109.47489 * 329.99906 * 9 7 5 13 13 N 1.46496 * 109.46778 * 294.99946 * 3 2 1 14 14 C 1.34777 * 120.00054 * 85.00172 * 13 3 2 15 15 O 1.21582 * 120.00057 * 359.97438 * 14 13 3 16 16 N 1.34784 * 120.00166 * 179.97438 * 14 13 3 17 17 C 1.39947 * 119.99779 * 175.38559 * 16 14 13 18 18 C 1.38927 * 120.04080 * 35.09848 * 17 16 14 19 19 C 1.38136 * 120.06280 * 179.97438 * 18 17 16 20 20 C 1.38178 * 120.13728 * 0.02562 * 19 18 17 21 21 C 1.38859 * 120.07556 * 359.96047 * 20 19 18 22 22 N 1.40181 * 120.03432 * 180.02562 * 21 20 19 23 23 C 1.35227 * 126.05617 * 4.99281 * 22 21 20 24 24 C 1.35319 * 107.71719 * 179.97438 * 23 22 21 25 25 C 1.39915 * 107.92752 * 0.02562 * 24 23 22 26 26 N 1.30873 * 108.24790 * 359.75886 * 25 24 23 27 27 C 1.38732 * 120.03350 * 214.82224 * 17 16 14 28 28 H 1.08995 * 109.47081 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46646 * 300.00416 * 1 2 3 30 30 H 1.09007 * 109.46786 * 59.99589 * 1 2 3 31 31 H 1.09006 * 109.47101 * 240.00021 * 2 1 3 32 32 H 1.08998 * 109.46997 * 119.99877 * 2 1 3 33 33 H 0.97002 * 120.00063 * 180.02562 * 8 7 5 34 34 H 0.97008 * 120.00215 * 264.99556 * 13 3 2 35 35 H 0.96993 * 119.99584 * 355.38645 * 16 14 13 36 36 H 1.08006 * 119.96812 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.92881 * 180.02562 * 19 18 17 38 38 H 1.08005 * 119.96264 * 179.97438 * 20 19 18 39 39 H 1.08005 * 126.14026 * 359.97438 * 23 22 21 40 40 H 1.07993 * 126.03114 * 180.02562 * 24 23 22 41 41 H 1.08005 * 125.87583 * 180.02562 * 25 24 23 42 42 H 1.08008 * 120.06791 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1474 1.8849 -0.6544 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1089 2.5701 10 1 2.8756 -1.3273 2.2634 11 1 3.7937 0.2348 3.8751 12 1 1.7877 0.8074 2.6387 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3414 2.6319 -0.4321 16 7 0.0789 3.2674 -2.5185 17 6 -1.2178 3.7708 -2.6725 18 6 -1.8820 4.3259 -1.5859 19 6 -3.1617 4.8235 -1.7375 20 6 -3.7852 4.7704 -2.9694 21 6 -3.1265 4.2170 -4.0595 22 7 -3.7598 4.1641 -5.3090 23 6 -4.9646 4.6969 -5.6139 24 6 -5.2154 4.4297 -6.9166 25 6 -4.1290 3.7094 -7.4253 26 7 -3.2543 3.5540 -6.4643 27 6 -1.8392 3.7214 -3.9119 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8771 0.4818 2.1129 34 1 2.2721 2.1231 -1.9978 35 1 0.7211 3.3523 -3.2404 36 1 -1.3973 4.3685 -0.6216 37 1 -3.6758 5.2549 -0.8914 38 1 -4.7860 5.1598 -3.0847 39 1 -5.6108 5.2386 -4.9390 40 1 -6.0981 4.7209 -7.4663 41 1 -4.0277 3.3480 -8.4380 42 1 -1.3234 3.2940 -4.7592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274660488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:35 Heat of formation + Delta-G solvation = 70.401735 kcal Electronic energy + Delta-G solvation = -25240.063197 eV Core-core repulsion = 21607.686122 eV Total energy + Delta-G solvation = -3632.377075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47088 -41.66630 -39.81528 -37.45216 -35.86520 -34.51929 -34.08541 -33.13252 -31.64889 -30.54756 -29.79909 -29.09217 -24.97537 -24.57401 -23.98822 -22.97739 -21.82052 -21.46470 -21.28525 -19.92938 -19.41878 -18.32812 -17.71628 -17.21791 -16.99756 -16.61538 -16.20287 -16.11344 -15.82628 -15.34342 -15.09842 -15.02594 -14.70588 -14.44266 -14.23733 -13.87301 -13.75562 -13.67659 -13.57690 -13.00904 -12.96218 -12.74422 -12.59525 -12.41558 -11.88495 -11.76581 -11.62560 -11.40666 -11.25111 -11.13516 -10.87223 -10.85299 -10.11075 -9.88327 -9.37788 -8.91230 -8.38318 -6.44116 -0.13187 0.22744 1.22413 1.28196 1.35699 1.36736 1.45971 1.71506 1.88554 2.12835 2.26210 2.79366 2.97698 3.27253 3.59480 3.85073 3.97712 4.10609 4.22294 4.23518 4.29013 4.31830 4.40812 4.45643 4.60127 4.77042 4.78455 4.81440 4.99237 5.07794 5.09411 5.14970 5.19665 5.29368 5.32041 5.39497 5.44552 5.52428 5.63720 5.69359 5.85928 5.95392 6.21951 6.26685 6.58502 6.66902 7.08314 7.21706 7.57600 8.76818 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.002696 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.484880 B =10381.492196 C =10649.009023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.138 4.138 3 C 0.269 3.731 4 H 0.028 0.972 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.257 1.257 13 N -0.710 5.710 14 C 0.699 3.301 15 O -0.602 6.602 16 N -0.680 5.680 17 C 0.185 3.815 18 C -0.149 4.149 19 C -0.067 4.067 20 C -0.151 4.151 21 C 0.164 3.836 22 N -0.335 5.335 23 C 0.048 3.952 24 C -0.266 4.266 25 C 0.049 3.951 26 N -0.340 5.340 27 C -0.161 4.161 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.270 0.730 34 H 0.404 0.596 35 H 0.419 0.581 36 H 0.127 0.873 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.212 0.788 40 H 0.183 0.817 41 H 0.215 0.785 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.082 8.516 -14.656 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.177 4.177 3 C 0.164 3.836 4 H 0.046 0.954 5 C -0.572 4.572 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.187 1.187 11 H -0.221 1.221 12 H -0.181 1.181 13 N -0.363 5.363 14 C 0.400 3.600 15 O -0.482 6.482 16 N -0.329 5.329 17 C 0.089 3.911 18 C -0.170 4.170 19 C -0.086 4.086 20 C -0.172 4.172 21 C 0.071 3.929 22 N -0.112 5.112 23 C -0.093 4.093 24 C -0.294 4.294 25 C -0.137 4.137 26 N -0.159 5.159 27 C -0.184 4.184 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.256 0.744 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.228 0.772 40 H 0.200 0.800 41 H 0.231 0.769 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.366 7.892 -13.300 27.192 hybrid contribution 0.352 -0.211 -0.217 0.464 sum -22.014 7.681 -13.517 26.950 Atomic orbital electron populations 1.21717 0.95249 1.00262 1.01520 1.22237 0.95775 0.98675 1.01003 1.18684 0.93027 0.89252 0.82620 0.95449 1.21264 0.90261 1.38761 1.06886 0.92565 1.25535 0.95742 0.95846 0.99865 1.69972 1.10308 1.46076 1.30889 0.86037 0.79435 0.79925 0.78263 1.18680 1.22105 1.18116 1.45160 1.14353 1.58689 1.18068 1.16012 0.82768 0.78413 0.82831 1.90864 1.52428 1.65681 1.39229 1.42515 1.12566 1.60306 1.17493 1.17356 0.84830 0.95081 0.93844 1.21496 0.97172 0.99233 0.99094 1.21153 0.93218 0.96725 0.97488 1.21053 1.02035 1.03539 0.90616 1.17392 0.92258 1.00688 0.82556 1.45988 1.15273 1.42533 1.07357 1.23366 0.87887 0.99243 0.98818 1.22032 1.03490 1.09165 0.94680 1.24705 0.91954 0.97290 0.99762 1.77448 1.24800 1.21038 0.92661 1.20412 0.94575 1.06021 0.97389 0.92646 0.94109 0.93241 0.91534 0.93623 0.92056 0.76123 0.74353 0.85523 0.81926 0.81779 0.77154 0.79992 0.76880 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.51 71.98 0.61 -4.48 16 2 C -0.14 -5.95 5.11 30.60 0.16 -5.80 16 3 C 0.27 12.52 1.83 44.25 0.08 12.60 16 4 H 0.03 1.42 6.63 -2.39 -0.02 1.41 16 5 C -0.53 -28.77 9.31 25.60 0.24 -28.53 16 6 H 0.06 3.23 7.98 -2.91 -0.02 3.21 16 7 C 0.03 1.68 5.45 84.66 0.46 2.14 16 8 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 9 Si 0.94 44.41 24.41 68.60 1.67 46.08 16 10 H -0.26 -11.70 6.83 99.48 0.68 -11.02 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.26 -11.99 6.53 99.48 0.65 -11.34 16 13 N -0.71 -27.35 5.03 -461.42 -2.32 -29.67 16 14 C 0.70 25.65 6.98 179.05 1.25 26.90 16 15 O -0.60 -25.41 10.91 -3.98 -0.04 -25.45 16 16 N -0.68 -19.62 5.34 -317.23 -1.69 -21.32 16 17 C 0.19 5.21 6.30 38.13 0.24 5.45 16 18 C -0.15 -4.12 8.69 22.41 0.19 -3.92 16 19 C -0.07 -1.33 10.03 22.23 0.22 -1.11 16 20 C -0.15 -2.67 9.45 22.40 0.21 -2.46 16 21 C 0.16 3.75 6.68 38.07 0.25 4.01 16 22 N -0.34 -7.28 3.80 -187.82 -0.71 -7.99 16 23 C 0.05 0.69 10.79 83.50 0.90 1.59 16 24 C -0.27 -3.39 10.81 22.00 0.24 -3.15 16 25 C 0.05 0.81 12.02 85.24 1.03 1.84 16 26 N -0.34 -8.13 11.88 -56.97 -0.68 -8.80 16 27 C -0.16 -4.18 9.58 22.51 0.22 -3.96 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.68 7.84 -2.39 -0.02 1.66 16 30 H 0.05 1.95 5.64 -2.38 -0.01 1.93 16 31 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.05 2.05 3.21 -2.39 -0.01 2.04 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.40 13.65 8.56 -92.70 -0.79 12.86 16 35 H 0.42 9.56 8.84 -92.71 -0.82 8.75 16 36 H 0.13 4.13 6.22 -2.91 -0.02 4.12 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.16 1.59 6.76 -2.91 -0.02 1.57 16 39 H 0.21 1.25 7.06 -2.91 -0.02 1.23 16 40 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.21 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.13 3.48 7.70 -2.91 -0.02 3.46 16 Total: -1.00 -72.76 342.54 2.21 -70.54 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.62 Total: 30.97 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.30 Total: 1.13 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -5.10 Total: -123.27 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.04 Total: -25.45 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.08 kcal Total: -72.76 2.21 -70.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274660488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.945 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds