Wall clock time and date at job start Tue Mar 31 2020 10:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 H 1.09001 * 109.47104 * 304.88515 * 3 2 1 5 5 C 1.50701 * 109.47064 * 184.88577 * 3 2 1 6 6 H 1.08000 * 119.99724 * 240.00071 * 5 3 2 7 7 C 1.37874 * 120.00005 * 59.72567 * 5 3 2 8 8 N 1.31519 * 119.99984 * 0.27199 * 7 5 3 9 9 Si 1.86802 * 120.00102 * 180.27635 * 7 5 3 10 10 H 1.48498 * 109.46833 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47296 * 119.99543 * 9 7 5 12 12 H 1.48493 * 109.47266 * 239.99897 * 9 7 5 13 13 N 1.46497 * 109.47173 * 64.88299 * 3 2 1 14 14 S 1.65599 * 120.00050 * 215.43013 * 13 3 2 15 15 O 1.42101 * 104.27431 * 181.20809 * 14 13 3 16 16 O 1.42100 * 104.27806 * 309.06255 * 14 13 3 17 17 C 1.81405 * 104.44992 * 65.13786 * 14 13 3 18 18 C 1.53003 * 109.46833 * 186.70985 * 17 14 13 19 19 C 1.47200 * 109.47125 * 60.00078 * 18 17 14 20 20 N 6.60593 * 87.79696 * 349.51129 * 2 1 3 21 21 C 1.52999 * 109.46998 * 299.99443 * 18 17 14 22 22 C 1.53003 * 109.46998 * 180.02562 * 21 18 17 23 23 C 1.53007 * 109.46691 * 60.00348 * 22 21 18 24 24 C 1.52998 * 109.47293 * 299.99928 * 23 22 21 25 25 C 1.52999 * 109.46716 * 180.02562 * 18 17 14 26 26 H 1.08997 * 109.46762 * 304.74115 * 1 2 3 27 27 H 1.09001 * 109.47104 * 64.73936 * 1 2 3 28 28 H 1.08999 * 109.47004 * 184.74326 * 1 2 3 29 29 H 1.08999 * 109.46810 * 240.00213 * 2 1 3 30 30 H 1.08996 * 109.47336 * 120.00330 * 2 1 3 31 31 H 0.96998 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99653 * 35.42999 * 13 3 2 33 33 H 1.09002 * 109.46544 * 306.70560 * 17 14 13 34 34 H 1.08993 * 109.47218 * 66.70926 * 17 14 13 35 35 H 1.08993 * 109.47543 * 300.00359 * 21 18 17 36 36 H 1.09003 * 109.46777 * 60.00478 * 21 18 17 37 37 H 1.08993 * 109.47266 * 300.00528 * 22 21 18 38 38 H 1.08995 * 109.47117 * 180.02562 * 22 21 18 39 39 H 1.08999 * 109.46590 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47173 * 59.99959 * 23 22 21 41 41 H 1.09002 * 109.47037 * 300.00114 * 24 23 22 42 42 H 1.08994 * 109.47501 * 180.02562 * 24 23 22 43 43 H 1.09009 * 109.47133 * 299.99883 * 25 18 17 44 44 H 1.09002 * 109.47352 * 59.99834 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6071 1.9810 -0.8430 5 6 3.5422 1.4442 -0.1210 6 1 4.1460 1.8893 0.6560 7 6 4.1459 0.8725 -1.2209 8 7 3.4106 0.3305 -2.1671 9 14 6.0082 0.8678 -1.3672 10 1 6.5996 1.5353 -0.1799 11 1 6.4953 -0.5331 -1.4419 12 1 6.4100 1.5978 -2.5963 13 7 1.6501 2.0983 1.2506 14 16 1.2431 3.7035 1.2518 15 8 0.9569 3.9914 2.6136 16 8 2.3219 4.3391 0.5798 17 6 -0.2682 3.7881 0.2521 18 6 -0.6561 5.2524 0.0371 19 6 0.4345 5.9513 -0.6622 20 7 1.2761 6.4908 -1.2017 21 6 -0.9030 5.9188 1.3920 22 6 -1.2915 7.3830 1.1769 23 6 -2.5664 7.4538 0.3339 24 6 -2.3196 6.7873 -1.0210 25 6 -1.9311 5.3237 -0.8056 26 1 -0.3633 0.5856 0.8445 27 1 -0.3633 0.4385 -0.9294 28 1 -0.3633 -1.0241 0.0850 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8353 -0.0720 -2.9406 32 1 1.6303 1.5923 2.0779 33 1 -0.0922 3.3133 -0.7132 34 1 -1.0757 3.2706 0.7698 35 1 -1.7105 5.4013 1.9097 36 1 0.0052 5.8680 1.9927 37 1 -0.4843 7.9008 0.6590 38 1 -1.4670 7.8579 2.1422 39 1 -2.8434 8.4968 0.1811 40 1 -3.3737 6.9359 0.8518 41 1 -1.5123 7.3051 -1.5390 42 1 -3.2276 6.8381 -1.6218 43 1 -1.7557 4.8488 -1.7710 44 1 -2.7385 4.8063 -0.2875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331076174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:56 Heat of formation + Delta-G solvation = -70.405830 kcal Electronic energy + Delta-G solvation = -25847.967723 eV Core-core repulsion = 22312.635975 eV Total energy + Delta-G solvation = -3535.331749 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.85176 -36.62696 -36.01293 -35.64215 -35.30617 -33.19622 -32.19157 -31.13874 -30.65526 -27.16975 -26.61626 -23.16494 -23.09146 -22.97262 -20.95045 -20.25672 -18.78803 -17.24809 -17.01223 -16.44920 -15.95433 -15.50414 -15.23577 -14.80894 -14.66332 -14.52622 -13.92662 -13.58570 -13.39496 -13.21337 -13.15334 -13.01483 -12.60808 -12.36066 -12.10367 -11.97699 -11.95352 -11.73677 -11.67435 -11.48233 -11.38334 -11.32810 -11.24627 -10.93242 -10.83907 -10.79093 -10.74173 -10.41579 -10.23382 -10.09650 -9.85108 -9.84797 -9.63927 -8.43802 -8.24993 -6.07928 -4.13139 0.75917 2.86737 2.90392 3.30711 3.38409 3.40248 3.47498 3.70704 4.14983 4.33422 4.41120 4.43730 4.50660 4.68598 4.87006 4.92845 4.96932 5.14954 5.22194 5.23111 5.32619 5.41476 5.52742 5.61927 5.73041 5.79357 5.85821 5.89316 5.98565 6.01045 6.02571 6.06623 6.15346 6.21891 6.39967 6.70236 6.84670 7.02270 7.52199 7.60999 7.71102 7.87324 8.07339 8.22698 8.90961 9.53252 10.96799 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.004610 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.974114 B = 6071.907316 C = 6338.434245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.279 3.721 4 H 0.038 0.962 5 C -0.515 4.515 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 N -1.101 6.101 14 S 2.600 3.400 15 O -0.977 6.977 16 O -0.931 6.931 17 C -0.641 4.641 18 C 0.066 3.934 19 C 0.179 3.821 20 N -0.381 5.381 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.100 4.100 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.406 0.594 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 6.968 4.840 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.175 3.825 4 H 0.055 0.945 5 C -0.555 4.555 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.861 5.861 14 S 2.690 3.310 15 O -0.967 6.967 16 O -0.920 6.920 17 C -0.768 4.768 18 C 0.061 3.939 19 C -0.140 4.140 20 N -0.055 5.055 21 C -0.174 4.174 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.139 4.139 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.239 0.761 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.266 8.497 4.077 17.098 hybrid contribution 0.231 -1.001 -0.127 1.035 sum -14.034 7.496 3.950 16.394 Atomic orbital electron populations 1.21885 0.99085 0.99808 1.00121 1.21909 0.91915 0.99465 1.03592 1.18559 0.95101 0.90112 0.78759 0.94468 1.21555 0.91224 1.36709 1.06003 0.91681 1.24891 0.98589 0.94986 0.95448 1.69829 1.34994 1.38853 1.09760 0.86454 0.85319 0.77465 0.78339 1.19612 1.21019 1.20911 1.55566 1.82742 1.29748 1.18090 1.05214 0.76537 0.74471 0.74783 1.93534 1.86536 1.84183 1.32492 1.93684 1.47263 1.74660 1.76426 1.30982 1.25433 1.01143 1.19198 1.17799 0.90518 0.89863 0.95706 1.28739 0.94492 0.95306 0.95461 1.81164 1.08012 1.08594 1.07721 1.22084 1.04500 0.97230 0.93586 1.21577 0.98235 0.95379 1.00857 1.21568 0.97646 1.00839 0.95681 1.21630 1.01915 0.95245 0.97689 1.21613 0.94395 0.97778 1.00094 0.94253 0.93628 0.94284 0.87469 0.93878 0.92786 0.76132 0.83747 0.83443 0.88355 0.90152 0.91756 0.90636 0.91671 0.91275 0.91847 0.90976 0.90365 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.86 37.16 0.37 -2.10 16 2 C -0.13 -2.68 5.37 -26.73 -0.14 -2.82 16 3 C 0.28 6.33 2.06 -69.08 -0.14 6.19 16 4 H 0.04 0.89 7.05 -51.93 -0.37 0.52 16 5 C -0.52 -13.89 8.84 -34.44 -0.30 -14.19 16 6 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.36 11.29 55.43 0.63 -23.74 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -1.10 -21.05 4.71 -5.88 -0.03 -21.08 16 14 S 2.60 47.48 4.47 -107.50 -0.48 47.00 16 15 O -0.98 -18.05 16.24 -57.54 -0.93 -18.99 16 16 O -0.93 -21.64 16.10 -57.54 -0.93 -22.56 16 17 C -0.64 -8.45 4.99 37.16 0.19 -8.26 16 18 C 0.07 0.83 0.50 -157.29 -0.08 0.75 16 19 C 0.18 2.97 9.32 -20.76 -0.19 2.78 16 20 N -0.38 -7.45 18.48 42.15 0.78 -6.67 16 21 C -0.14 -1.52 4.27 -26.73 -0.11 -1.64 16 22 C -0.12 -1.19 5.70 -26.73 -0.15 -1.34 16 23 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 24 C -0.13 -1.09 5.70 -26.76 -0.15 -1.25 16 25 C -0.10 -0.92 4.70 -26.76 -0.13 -1.05 16 26 H 0.04 0.55 7.62 -51.93 -0.40 0.15 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.11 2.55 5.94 -51.93 -0.31 2.24 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.41 6.90 8.80 -34.47 -0.30 6.60 16 33 H 0.14 1.92 7.29 -51.92 -0.38 1.55 16 34 H 0.15 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.07 5.78 -51.93 -0.30 0.77 16 37 H 0.06 0.72 7.23 -51.93 -0.38 0.35 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.66 7.23 -51.93 -0.38 0.28 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -33.30 357.28 -8.71 -42.01 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.00 Total: 4.37 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -1.11 Total: -22.42 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 1.38 Total: -51.49 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.86 Total: -41.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 47.48 SS G_CDS: -0.48 Total: 47.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.30 -8.71 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331076174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.397 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds