Wall clock time and date at job start Tue Mar 31 2020 10:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 H 1.09001 * 109.47104 * 304.88515 * 3 2 1 5 5 C 1.50701 * 109.47064 * 184.88577 * 3 2 1 6 6 H 1.08000 * 119.99724 * 240.00071 * 5 3 2 7 7 C 1.37874 * 120.00005 * 59.72567 * 5 3 2 8 8 N 1.31519 * 119.99984 * 0.27199 * 7 5 3 9 9 Si 1.86802 * 120.00102 * 180.27635 * 7 5 3 10 10 H 1.48498 * 109.46833 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47296 * 119.99543 * 9 7 5 12 12 H 1.48493 * 109.47266 * 239.99897 * 9 7 5 13 13 N 1.46497 * 109.47173 * 64.88299 * 3 2 1 14 14 S 1.65599 * 120.00050 * 215.43013 * 13 3 2 15 15 O 1.42101 * 104.27431 * 181.20809 * 14 13 3 16 16 O 1.42100 * 104.27806 * 309.06255 * 14 13 3 17 17 C 1.81405 * 104.44992 * 65.13786 * 14 13 3 18 18 C 1.53003 * 109.46833 * 186.70985 * 17 14 13 19 19 C 1.47200 * 109.47125 * 60.00078 * 18 17 14 20 20 N 6.60593 * 87.79696 * 349.51129 * 2 1 3 21 21 C 1.52999 * 109.46998 * 299.99443 * 18 17 14 22 22 C 1.53003 * 109.46998 * 180.02562 * 21 18 17 23 23 C 1.53007 * 109.46691 * 60.00348 * 22 21 18 24 24 C 1.52998 * 109.47293 * 299.99928 * 23 22 21 25 25 C 1.52999 * 109.46716 * 180.02562 * 18 17 14 26 26 H 1.08997 * 109.46762 * 304.74115 * 1 2 3 27 27 H 1.09001 * 109.47104 * 64.73936 * 1 2 3 28 28 H 1.08999 * 109.47004 * 184.74326 * 1 2 3 29 29 H 1.08999 * 109.46810 * 240.00213 * 2 1 3 30 30 H 1.08996 * 109.47336 * 120.00330 * 2 1 3 31 31 H 0.96998 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99653 * 35.42999 * 13 3 2 33 33 H 1.09002 * 109.46544 * 306.70560 * 17 14 13 34 34 H 1.08993 * 109.47218 * 66.70926 * 17 14 13 35 35 H 1.08993 * 109.47543 * 300.00359 * 21 18 17 36 36 H 1.09003 * 109.46777 * 60.00478 * 21 18 17 37 37 H 1.08993 * 109.47266 * 300.00528 * 22 21 18 38 38 H 1.08995 * 109.47117 * 180.02562 * 22 21 18 39 39 H 1.08999 * 109.46590 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47173 * 59.99959 * 23 22 21 41 41 H 1.09002 * 109.47037 * 300.00114 * 24 23 22 42 42 H 1.08994 * 109.47501 * 180.02562 * 24 23 22 43 43 H 1.09009 * 109.47133 * 299.99883 * 25 18 17 44 44 H 1.09002 * 109.47352 * 59.99834 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6071 1.9810 -0.8430 5 6 3.5422 1.4442 -0.1210 6 1 4.1460 1.8893 0.6560 7 6 4.1459 0.8725 -1.2209 8 7 3.4106 0.3305 -2.1671 9 14 6.0082 0.8678 -1.3672 10 1 6.5996 1.5353 -0.1799 11 1 6.4953 -0.5331 -1.4419 12 1 6.4100 1.5978 -2.5963 13 7 1.6501 2.0983 1.2506 14 16 1.2431 3.7035 1.2518 15 8 0.9569 3.9914 2.6136 16 8 2.3219 4.3391 0.5798 17 6 -0.2682 3.7881 0.2521 18 6 -0.6561 5.2524 0.0371 19 6 0.4345 5.9513 -0.6622 20 7 1.2761 6.4908 -1.2017 21 6 -0.9030 5.9188 1.3920 22 6 -1.2915 7.3830 1.1769 23 6 -2.5664 7.4538 0.3339 24 6 -2.3196 6.7873 -1.0210 25 6 -1.9311 5.3237 -0.8056 26 1 -0.3633 0.5856 0.8445 27 1 -0.3633 0.4385 -0.9294 28 1 -0.3633 -1.0241 0.0850 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8353 -0.0720 -2.9406 32 1 1.6303 1.5923 2.0779 33 1 -0.0922 3.3133 -0.7132 34 1 -1.0757 3.2706 0.7698 35 1 -1.7105 5.4013 1.9097 36 1 0.0052 5.8680 1.9927 37 1 -0.4843 7.9008 0.6590 38 1 -1.4670 7.8579 2.1422 39 1 -2.8434 8.4968 0.1811 40 1 -3.3737 6.9359 0.8518 41 1 -1.5123 7.3051 -1.5390 42 1 -3.2276 6.8381 -1.6218 43 1 -1.7557 4.8488 -1.7710 44 1 -2.7385 4.8063 -0.2875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331076174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:55 Heat of formation + Delta-G solvation = -94.179736 kcal Electronic energy + Delta-G solvation = -25848.998637 eV Core-core repulsion = 22312.635975 eV Total energy + Delta-G solvation = -3536.362663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75902 -38.16728 -37.66651 -36.93230 -36.82415 -34.17354 -34.10723 -32.17494 -31.82026 -28.55404 -28.04023 -24.84824 -24.11235 -23.75682 -21.92731 -21.70092 -20.23062 -18.77000 -18.53768 -17.86030 -17.19995 -17.12036 -16.47978 -16.20010 -15.70317 -15.53086 -15.40283 -14.90899 -14.72409 -14.59195 -14.33990 -14.13410 -13.66394 -13.55525 -13.38345 -13.23969 -13.17722 -13.05174 -13.01164 -12.92579 -12.84863 -12.67507 -12.65484 -12.59568 -12.12045 -12.09846 -11.94433 -11.61692 -11.51419 -11.43398 -11.39132 -11.13255 -10.92634 -10.45980 -9.96100 -8.13766 -6.24004 -0.64099 1.33628 1.38060 1.48035 1.59750 1.65476 1.95768 2.41683 2.62846 2.85130 3.12603 3.25925 3.42423 3.53530 3.70042 4.07821 4.14419 4.25545 4.26913 4.42240 4.48833 4.53344 4.64212 4.65700 4.70001 4.75014 4.88654 4.93053 5.02799 5.10522 5.19701 5.20421 5.22508 5.33893 5.38530 5.44429 5.46325 5.53335 5.68420 5.84367 6.04633 6.30745 6.45999 6.49036 6.82340 7.43819 8.88002 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.004610 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.974114 B = 6071.907316 C = 6338.434245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.285 3.715 4 H 0.025 0.975 5 C -0.539 4.539 6 H 0.040 0.960 7 C 0.023 3.977 8 N -0.907 5.907 9 Si 0.937 3.063 10 H -0.281 1.281 11 H -0.268 1.268 12 H -0.285 1.285 13 N -1.102 6.102 14 S 2.589 3.411 15 O -0.984 6.984 16 O -0.997 6.997 17 C -0.612 4.612 18 C 0.060 3.940 19 C 0.197 3.803 20 N -0.452 5.452 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.115 4.115 24 C -0.130 4.130 25 C -0.097 4.097 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.414 0.586 33 H 0.149 0.851 34 H 0.206 0.794 35 H 0.141 0.859 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.032 0.968 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.200 6.192 5.602 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.180 3.820 4 H 0.043 0.957 5 C -0.578 4.578 6 H 0.059 0.941 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.764 3.236 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.211 1.211 13 N -0.861 5.861 14 S 2.686 3.314 15 O -0.974 6.974 16 O -0.986 6.986 17 C -0.745 4.745 18 C 0.055 3.945 19 C -0.121 4.121 20 N -0.126 5.126 21 C -0.180 4.180 22 C -0.164 4.164 23 C -0.152 4.152 24 C -0.167 4.167 25 C -0.136 4.136 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.248 0.752 33 H 0.167 0.833 34 H 0.224 0.776 35 H 0.159 0.841 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.358 7.702 4.887 20.499 hybrid contribution 1.485 -0.675 -0.324 1.663 sum -16.873 7.027 4.562 18.838 Atomic orbital electron populations 1.21814 0.95078 1.01697 1.01660 1.21725 0.95535 0.97237 1.01947 1.18275 0.92497 0.91534 0.79729 0.95711 1.21891 0.93988 1.36439 1.05519 0.94147 1.25434 1.01480 0.95179 0.95580 1.69902 1.35763 1.39125 1.09865 0.85828 0.82185 0.78037 0.77554 1.20600 1.19300 1.21119 1.55318 1.83748 1.29678 1.17385 1.05210 0.77737 0.73499 0.74996 1.93521 1.86896 1.83862 1.33154 1.93619 1.51973 1.75676 1.77374 1.30758 1.22725 1.02672 1.18330 1.18346 0.90652 0.88615 0.96936 1.29778 0.94154 0.94071 0.94099 1.81147 1.10249 1.10919 1.10335 1.22249 1.04684 0.98647 0.92374 1.21629 0.98549 0.94277 1.01911 1.21580 0.97034 1.01747 0.94819 1.21679 1.01930 0.94687 0.98444 1.21769 0.93220 0.98693 0.99918 0.91440 0.93102 0.92504 0.90672 0.94005 0.92653 0.75190 0.83289 0.77634 0.84116 0.93069 0.94799 0.89032 0.91011 0.88243 0.94868 0.88494 0.90383 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.86 71.99 0.71 -3.52 16 2 C -0.12 -5.06 5.37 30.60 0.16 -4.89 16 3 C 0.29 13.01 2.06 44.25 0.09 13.10 16 4 H 0.03 1.20 7.05 -2.39 -0.02 1.18 16 5 C -0.54 -29.98 8.84 25.60 0.23 -29.76 16 6 H 0.04 2.38 7.81 -2.91 -0.02 2.35 16 7 C 0.02 1.28 5.29 84.65 0.45 1.73 16 8 N -0.91 -50.10 11.29 21.45 0.24 -49.85 16 9 Si 0.94 45.50 29.54 68.60 2.03 47.53 16 10 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 N -1.10 -41.60 4.71 -172.52 -0.81 -42.41 16 14 S 2.59 93.53 4.47 -56.49 -0.25 93.28 16 15 O -0.98 -35.46 16.24 -127.65 -2.07 -37.53 16 16 O -1.00 -48.59 16.10 -127.65 -2.05 -50.65 16 17 C -0.61 -14.05 4.99 71.98 0.36 -13.69 16 18 C 0.06 1.33 0.50 -53.99 -0.03 1.31 16 19 C 0.20 6.65 9.32 89.44 0.83 7.48 16 20 N -0.45 -18.74 18.48 20.00 0.37 -18.37 16 21 C -0.14 -2.75 4.27 30.59 0.13 -2.62 16 22 C -0.13 -2.17 5.70 30.60 0.17 -2.00 16 23 C -0.11 -1.31 5.92 30.60 0.18 -1.13 16 24 C -0.13 -1.79 5.70 30.58 0.17 -1.62 16 25 C -0.10 -1.34 4.70 30.58 0.14 -1.20 16 26 H 0.07 1.57 7.62 -2.39 -0.02 1.56 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 3.57 5.94 -2.39 -0.01 3.56 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.41 13.77 8.80 -96.74 -0.85 12.92 16 33 H 0.15 3.51 7.29 -2.39 -0.02 3.50 16 34 H 0.21 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.31 5.78 -2.39 -0.01 1.30 16 37 H 0.03 0.77 7.23 -2.39 -0.02 0.75 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.03 0.65 7.23 -2.39 -0.02 0.64 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -79.32 357.28 1.20 -78.12 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.15 Total: 16.69 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.61 Total: -36.81 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -0.20 Total: -110.64 kcal Atomic # 8 Polarization: -84.05 SS G_CDS: -4.13 Total: -88.18 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 93.53 SS G_CDS: -0.25 Total: 93.28 kcal Total: -79.32 1.20 -78.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331076174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.057 kcal (2) G-P(sol) polarization free energy of solvation -79.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds