Wall clock time and date at job start Tue Mar 31 2020 10:40:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.53000 * 109.47142 * 2 1
4 4 H 1.09001 * 109.47104 * 304.88515 * 3 2 1
5 5 C 1.50701 * 109.47064 * 184.88577 * 3 2 1
6 6 H 1.08000 * 119.99724 * 240.00071 * 5 3 2
7 7 C 1.37874 * 120.00005 * 59.72567 * 5 3 2
8 8 N 1.31519 * 119.99984 * 0.27199 * 7 5 3
9 9 Si 1.86802 * 120.00102 * 180.27635 * 7 5 3
10 10 H 1.48498 * 109.46833 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47296 * 119.99543 * 9 7 5
12 12 H 1.48493 * 109.47266 * 239.99897 * 9 7 5
13 13 N 1.46497 * 109.47173 * 64.88299 * 3 2 1
14 14 S 1.65599 * 120.00050 * 215.43013 * 13 3 2
15 15 O 1.42101 * 104.27431 * 181.20809 * 14 13 3
16 16 O 1.42100 * 104.27806 * 309.06255 * 14 13 3
17 17 C 1.81405 * 104.44992 * 65.13786 * 14 13 3
18 18 C 1.53003 * 109.46833 * 186.70985 * 17 14 13
19 19 C 1.47200 * 109.47125 * 60.00078 * 18 17 14
20 20 N 6.60593 * 87.79696 * 349.51129 * 2 1 3
21 21 C 1.52999 * 109.46998 * 299.99443 * 18 17 14
22 22 C 1.53003 * 109.46998 * 180.02562 * 21 18 17
23 23 C 1.53007 * 109.46691 * 60.00348 * 22 21 18
24 24 C 1.52998 * 109.47293 * 299.99928 * 23 22 21
25 25 C 1.52999 * 109.46716 * 180.02562 * 18 17 14
26 26 H 1.08997 * 109.46762 * 304.74115 * 1 2 3
27 27 H 1.09001 * 109.47104 * 64.73936 * 1 2 3
28 28 H 1.08999 * 109.47004 * 184.74326 * 1 2 3
29 29 H 1.08999 * 109.46810 * 240.00213 * 2 1 3
30 30 H 1.08996 * 109.47336 * 120.00330 * 2 1 3
31 31 H 0.96998 * 119.99669 * 180.02562 * 8 7 5
32 32 H 0.97004 * 119.99653 * 35.42999 * 13 3 2
33 33 H 1.09002 * 109.46544 * 306.70560 * 17 14 13
34 34 H 1.08993 * 109.47218 * 66.70926 * 17 14 13
35 35 H 1.08993 * 109.47543 * 300.00359 * 21 18 17
36 36 H 1.09003 * 109.46777 * 60.00478 * 21 18 17
37 37 H 1.08993 * 109.47266 * 300.00528 * 22 21 18
38 38 H 1.08995 * 109.47117 * 180.02562 * 22 21 18
39 39 H 1.08999 * 109.46590 * 179.97438 * 23 22 21
40 40 H 1.09002 * 109.47173 * 59.99959 * 23 22 21
41 41 H 1.09002 * 109.47037 * 300.00114 * 24 23 22
42 42 H 1.08994 * 109.47501 * 180.02562 * 24 23 22
43 43 H 1.09009 * 109.47133 * 299.99883 * 25 18 17
44 44 H 1.09002 * 109.47352 * 59.99834 * 25 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6071 1.9810 -0.8430
5 6 3.5422 1.4442 -0.1210
6 1 4.1460 1.8893 0.6560
7 6 4.1459 0.8725 -1.2209
8 7 3.4106 0.3305 -2.1671
9 14 6.0082 0.8678 -1.3672
10 1 6.5996 1.5353 -0.1799
11 1 6.4953 -0.5331 -1.4419
12 1 6.4100 1.5978 -2.5963
13 7 1.6501 2.0983 1.2506
14 16 1.2431 3.7035 1.2518
15 8 0.9569 3.9914 2.6136
16 8 2.3219 4.3391 0.5798
17 6 -0.2682 3.7881 0.2521
18 6 -0.6561 5.2524 0.0371
19 6 0.4345 5.9513 -0.6622
20 7 1.2761 6.4908 -1.2017
21 6 -0.9030 5.9188 1.3920
22 6 -1.2915 7.3830 1.1769
23 6 -2.5664 7.4538 0.3339
24 6 -2.3196 6.7873 -1.0210
25 6 -1.9311 5.3237 -0.8056
26 1 -0.3633 0.5856 0.8445
27 1 -0.3633 0.4385 -0.9294
28 1 -0.3633 -1.0241 0.0850
29 1 1.8934 -0.5138 -0.8900
30 1 1.8934 -0.5139 0.8899
31 1 3.8353 -0.0720 -2.9406
32 1 1.6303 1.5923 2.0779
33 1 -0.0922 3.3133 -0.7132
34 1 -1.0757 3.2706 0.7698
35 1 -1.7105 5.4013 1.9097
36 1 0.0052 5.8680 1.9927
37 1 -0.4843 7.9008 0.6590
38 1 -1.4670 7.8579 2.1422
39 1 -2.8434 8.4968 0.1811
40 1 -3.3737 6.9359 0.8518
41 1 -1.5123 7.3051 -1.5390
42 1 -3.2276 6.8381 -1.6218
43 1 -1.7557 4.8488 -1.7710
44 1 -2.7385 4.8063 -0.2875
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331076174.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:40:55
Heat of formation + Delta-G solvation = -94.179736 kcal
Electronic energy + Delta-G solvation = -25848.998637 eV
Core-core repulsion = 22312.635975 eV
Total energy + Delta-G solvation = -3536.362663 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.145 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.75902 -38.16728 -37.66651 -36.93230 -36.82415 -34.17354 -34.10723 -32.17494
-31.82026 -28.55404 -28.04023 -24.84824 -24.11235 -23.75682 -21.92731 -21.70092
-20.23062 -18.77000 -18.53768 -17.86030 -17.19995 -17.12036 -16.47978 -16.20010
-15.70317 -15.53086 -15.40283 -14.90899 -14.72409 -14.59195 -14.33990 -14.13410
-13.66394 -13.55525 -13.38345 -13.23969 -13.17722 -13.05174 -13.01164 -12.92579
-12.84863 -12.67507 -12.65484 -12.59568 -12.12045 -12.09846 -11.94433 -11.61692
-11.51419 -11.43398 -11.39132 -11.13255 -10.92634 -10.45980 -9.96100 -8.13766
-6.24004 -0.64099 1.33628 1.38060 1.48035 1.59750 1.65476 1.95768
2.41683 2.62846 2.85130 3.12603 3.25925 3.42423 3.53530 3.70042
4.07821 4.14419 4.25545 4.26913 4.42240 4.48833 4.53344 4.64212
4.65700 4.70001 4.75014 4.88654 4.93053 5.02799 5.10522 5.19701
5.20421 5.22508 5.33893 5.38530 5.44429 5.46325 5.53335 5.68420
5.84367 6.04633 6.30745 6.45999 6.49036 6.82340 7.43819 8.88002
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.018576 B = 0.004610 C = 0.004416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1506.974114 B = 6071.907316 C = 6338.434245
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.124 4.124
3 C 0.285 3.715
4 H 0.025 0.975
5 C -0.539 4.539
6 H 0.040 0.960
7 C 0.023 3.977
8 N -0.907 5.907
9 Si 0.937 3.063
10 H -0.281 1.281
11 H -0.268 1.268
12 H -0.285 1.285
13 N -1.102 6.102
14 S 2.589 3.411
15 O -0.984 6.984
16 O -0.997 6.997
17 C -0.612 4.612
18 C 0.060 3.940
19 C 0.197 3.803
20 N -0.452 5.452
21 C -0.141 4.141
22 C -0.126 4.126
23 C -0.115 4.115
24 C -0.130 4.130
25 C -0.097 4.097
26 H 0.067 0.933
27 H 0.050 0.950
28 H 0.056 0.944
29 H 0.075 0.925
30 H 0.041 0.959
31 H 0.264 0.736
32 H 0.414 0.586
33 H 0.149 0.851
34 H 0.206 0.794
35 H 0.141 0.859
36 H 0.051 0.949
37 H 0.033 0.967
38 H 0.091 0.909
39 H 0.071 0.929
40 H 0.099 0.901
41 H 0.032 0.968
42 H 0.097 0.903
43 H 0.077 0.923
44 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.200 6.192 5.602 21.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.164 4.164
3 C 0.180 3.820
4 H 0.043 0.957
5 C -0.578 4.578
6 H 0.059 0.941
7 C -0.177 4.177
8 N -0.547 5.547
9 Si 0.764 3.236
10 H -0.206 1.206
11 H -0.193 1.193
12 H -0.211 1.211
13 N -0.861 5.861
14 S 2.686 3.314
15 O -0.974 6.974
16 O -0.986 6.986
17 C -0.745 4.745
18 C 0.055 3.945
19 C -0.121 4.121
20 N -0.126 5.126
21 C -0.180 4.180
22 C -0.164 4.164
23 C -0.152 4.152
24 C -0.167 4.167
25 C -0.136 4.136
26 H 0.086 0.914
27 H 0.069 0.931
28 H 0.075 0.925
29 H 0.093 0.907
30 H 0.060 0.940
31 H 0.073 0.927
32 H 0.248 0.752
33 H 0.167 0.833
34 H 0.224 0.776
35 H 0.159 0.841
36 H 0.069 0.931
37 H 0.052 0.948
38 H 0.110 0.890
39 H 0.090 0.910
40 H 0.118 0.882
41 H 0.051 0.949
42 H 0.115 0.885
43 H 0.096 0.904
44 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -18.358 7.702 4.887 20.499
hybrid contribution 1.485 -0.675 -0.324 1.663
sum -16.873 7.027 4.562 18.838
Atomic orbital electron populations
1.21814 0.95078 1.01697 1.01660 1.21725 0.95535 0.97237 1.01947
1.18275 0.92497 0.91534 0.79729 0.95711 1.21891 0.93988 1.36439
1.05519 0.94147 1.25434 1.01480 0.95179 0.95580 1.69902 1.35763
1.39125 1.09865 0.85828 0.82185 0.78037 0.77554 1.20600 1.19300
1.21119 1.55318 1.83748 1.29678 1.17385 1.05210 0.77737 0.73499
0.74996 1.93521 1.86896 1.83862 1.33154 1.93619 1.51973 1.75676
1.77374 1.30758 1.22725 1.02672 1.18330 1.18346 0.90652 0.88615
0.96936 1.29778 0.94154 0.94071 0.94099 1.81147 1.10249 1.10919
1.10335 1.22249 1.04684 0.98647 0.92374 1.21629 0.98549 0.94277
1.01911 1.21580 0.97034 1.01747 0.94819 1.21679 1.01930 0.94687
0.98444 1.21769 0.93220 0.98693 0.99918 0.91440 0.93102 0.92504
0.90672 0.94005 0.92653 0.75190 0.83289 0.77634 0.84116 0.93069
0.94799 0.89032 0.91011 0.88243 0.94868 0.88494 0.90383 0.84855
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.23 9.86 71.99 0.71 -3.52 16
2 C -0.12 -5.06 5.37 30.60 0.16 -4.89 16
3 C 0.29 13.01 2.06 44.25 0.09 13.10 16
4 H 0.03 1.20 7.05 -2.39 -0.02 1.18 16
5 C -0.54 -29.98 8.84 25.60 0.23 -29.76 16
6 H 0.04 2.38 7.81 -2.91 -0.02 2.35 16
7 C 0.02 1.28 5.29 84.65 0.45 1.73 16
8 N -0.91 -50.10 11.29 21.45 0.24 -49.85 16
9 Si 0.94 45.50 29.54 68.60 2.03 47.53 16
10 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16
11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16
13 N -1.10 -41.60 4.71 -172.52 -0.81 -42.41 16
14 S 2.59 93.53 4.47 -56.49 -0.25 93.28 16
15 O -0.98 -35.46 16.24 -127.65 -2.07 -37.53 16
16 O -1.00 -48.59 16.10 -127.65 -2.05 -50.65 16
17 C -0.61 -14.05 4.99 71.98 0.36 -13.69 16
18 C 0.06 1.33 0.50 -53.99 -0.03 1.31 16
19 C 0.20 6.65 9.32 89.44 0.83 7.48 16
20 N -0.45 -18.74 18.48 20.00 0.37 -18.37 16
21 C -0.14 -2.75 4.27 30.59 0.13 -2.62 16
22 C -0.13 -2.17 5.70 30.60 0.17 -2.00 16
23 C -0.11 -1.31 5.92 30.60 0.18 -1.13 16
24 C -0.13 -1.79 5.70 30.58 0.17 -1.62 16
25 C -0.10 -1.34 4.70 30.58 0.14 -1.20 16
26 H 0.07 1.57 7.62 -2.39 -0.02 1.56 16
27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
29 H 0.07 3.57 5.94 -2.39 -0.01 3.56 16
30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16
32 H 0.41 13.77 8.80 -96.74 -0.85 12.92 16
33 H 0.15 3.51 7.29 -2.39 -0.02 3.50 16
34 H 0.21 2.36 8.14 -2.39 -0.02 2.34 16
35 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16
36 H 0.05 1.31 5.78 -2.39 -0.01 1.30 16
37 H 0.03 0.77 7.23 -2.39 -0.02 0.75 16
38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
40 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16
41 H 0.03 0.65 7.23 -2.39 -0.02 0.64 16
42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
43 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16
44 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16
Total: -1.00 -79.32 357.28 1.20 -78.12
By element:
Atomic # 1 Polarization: 16.54 SS G_CDS: 0.15 Total: 16.69 kcal
Atomic # 6 Polarization: -40.41 SS G_CDS: 3.61 Total: -36.81 kcal
Atomic # 7 Polarization: -110.44 SS G_CDS: -0.20 Total: -110.64 kcal
Atomic # 8 Polarization: -84.05 SS G_CDS: -4.13 Total: -88.18 kcal
Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal
Atomic # 16 Polarization: 93.53 SS G_CDS: -0.25 Total: 93.28 kcal
Total: -79.32 1.20 -78.12 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331076174.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.057 kcal
(2) G-P(sol) polarization free energy of solvation -79.323 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.122 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.180 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds