Wall clock time and date at job start Tue Mar 31 2020 10:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47343 * 2 1 4 4 N 1.46901 * 109.46995 * 185.86305 * 3 2 1 5 5 C 1.46899 * 110.99921 * 173.11379 * 4 3 2 6 6 C 1.53003 * 109.46833 * 293.95079 * 5 4 3 7 7 C 1.53002 * 109.47138 * 180.02562 * 6 5 4 8 8 S 1.80998 * 109.47217 * 180.02562 * 7 6 5 9 9 C 1.76201 * 100.00006 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99947 * 359.97438 * 9 8 7 11 11 C 1.38799 * 120.00010 * 180.02562 * 9 8 7 12 12 N 1.31632 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00006 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47078 * 59.99690 * 13 11 9 15 15 H 1.48498 * 109.47147 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46929 * 300.00029 * 13 11 9 17 17 C 1.46904 * 110.99914 * 297.06383 * 4 3 2 18 18 H 1.09003 * 110.54054 * 49.15902 * 17 4 3 19 19 C 1.54226 * 110.60347 * 172.17567 * 17 4 3 20 20 C 1.51315 * 103.55612 * 118.51927 * 19 17 4 21 21 O 1.21221 * 125.39546 * 179.97438 * 20 19 17 22 22 N 1.33879 * 109.20579 * 359.97438 * 20 19 17 23 23 C 1.46498 * 122.76122 * 179.97438 * 22 20 19 24 24 C 1.33870 * 114.47359 * 0.02562 * 22 20 19 25 25 O 1.21230 * 125.39380 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.47102 * 59.99673 * 1 2 3 27 27 H 1.08995 * 109.47770 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47011 * 300.00423 * 1 2 3 29 29 H 1.09001 * 109.47011 * 239.99576 * 2 1 3 30 30 H 1.09004 * 109.47102 * 120.00327 * 2 1 3 31 31 H 1.08994 * 109.47415 * 65.86190 * 3 2 1 32 32 H 1.08996 * 109.47138 * 305.85736 * 3 2 1 33 33 H 1.09002 * 109.47102 * 173.95564 * 5 4 3 34 34 H 1.08995 * 109.47597 * 53.95070 * 5 4 3 35 35 H 1.08993 * 109.47028 * 60.00075 * 6 5 4 36 36 H 1.08999 * 109.47030 * 299.99586 * 6 5 4 37 37 H 1.08997 * 109.47215 * 59.99464 * 7 6 5 38 38 H 1.09008 * 109.46825 * 300.00094 * 7 6 5 39 39 H 0.96996 * 119.99938 * 180.02562 * 12 11 9 40 40 H 1.09007 * 110.60196 * 237.03182 * 19 17 4 41 41 H 1.08997 * 110.61089 * 359.97438 * 19 17 4 42 42 H 1.08994 * 109.47548 * 270.00373 * 23 22 20 43 43 H 1.09004 * 109.46925 * 30.00784 * 23 22 20 44 44 H 1.08996 * 109.46895 * 149.99841 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5022 1.4448 -0.1415 5 6 4.0127 2.8119 -0.3094 6 6 3.5173 3.3813 -1.6403 7 6 4.0494 4.8051 -1.8156 8 16 3.4628 5.4790 -3.3897 9 6 4.2020 7.0774 -3.3327 10 1 4.8052 7.3634 -2.4837 11 6 4.0082 7.9693 -4.3783 12 7 3.2726 7.6209 -5.4128 13 14 4.7925 9.6637 -4.3182 14 1 6.2685 9.5233 -4.2353 15 1 4.4357 10.4182 -5.5465 16 1 4.2971 10.3964 -3.1252 17 6 4.1427 0.7804 1.0015 18 1 3.6745 -0.1849 1.1943 19 6 5.6559 0.6138 0.7542 20 6 6.2882 1.4152 1.8711 21 8 7.4793 1.5508 2.0507 22 7 5.3236 1.9509 2.6294 23 6 5.6068 2.7869 3.7986 24 6 4.0791 1.6588 2.2319 25 8 3.0623 2.0386 2.7717 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7650 1.9251 0.9377 32 1 1.5936 1.9857 -0.8329 33 1 5.1025 2.7960 -0.3042 34 1 3.6545 3.4366 0.5088 35 1 2.4275 3.3972 -1.6456 36 1 3.8756 2.7567 -2.4586 37 1 5.1393 4.7888 -1.8104 38 1 3.6915 5.4300 -0.9973 39 1 3.1375 8.2441 -6.1437 40 1 5.9429 -0.4355 0.8249 41 1 5.9333 1.0234 -0.2170 42 1 5.6819 2.1579 4.6855 43 1 6.5478 3.3160 3.6476 44 1 4.8015 3.5091 3.9324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338328950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:56 Heat of formation + Delta-G solvation = -70.727408 kcal Electronic energy + Delta-G solvation = -24488.362102 eV Core-core repulsion = 20953.016408 eV Total energy + Delta-G solvation = -3535.345693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.43385 -39.16140 -37.97076 -36.11980 -34.09591 -33.56356 -32.43655 -31.09328 -27.39943 -26.84050 -26.30553 -25.54842 -23.85304 -22.28439 -21.62689 -20.89076 -19.49743 -17.64039 -17.58857 -17.31907 -16.72071 -15.90978 -15.55521 -15.46705 -14.94380 -14.81650 -14.77816 -14.42209 -14.17575 -14.03175 -13.51758 -13.26878 -13.04449 -12.90376 -12.82108 -12.64883 -12.17161 -12.14567 -11.85702 -11.71781 -11.42348 -11.10986 -11.06295 -11.03071 -10.84331 -10.80227 -10.65059 -10.47067 -10.28493 -10.10853 -9.58193 -9.05825 -8.62549 -8.33061 -6.54079 -6.23484 -3.93992 1.14404 2.19684 2.34198 3.18910 3.23010 3.27273 3.34990 3.61345 3.71904 3.92441 4.06872 4.21790 4.55476 4.75814 4.83839 4.90554 4.95337 4.99638 5.10351 5.12575 5.16604 5.20161 5.28727 5.31077 5.34415 5.37561 5.52015 5.58144 5.63921 5.66445 5.79069 5.89972 5.94706 6.04675 6.13300 6.26260 6.43234 6.49064 6.58922 6.71670 6.77203 6.96415 7.42008 7.59597 8.35630 9.22857 10.84643 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.003351 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.975227 B = 8354.852659 C = 9727.753667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.036 3.964 4 N -0.502 5.502 5 C 0.044 3.956 6 C -0.090 4.090 7 C -0.115 4.115 8 S -0.127 6.127 9 C -0.518 4.518 10 H 0.071 0.929 11 C 0.072 3.928 12 N -0.870 5.870 13 Si 0.917 3.083 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.274 1.274 17 C 0.049 3.951 18 H 0.137 0.863 19 C -0.154 4.154 20 C 0.527 3.473 21 O -0.480 6.480 22 N -0.577 5.577 23 C 0.065 3.935 24 C 0.497 3.503 25 O -0.475 6.475 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.268 0.732 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 -17.661 15.360 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.091 4.091 4 N -0.225 5.225 5 C -0.084 4.084 6 C -0.129 4.129 7 C -0.264 4.264 8 S 0.101 5.899 9 C -0.666 4.666 10 H 0.089 0.911 11 C -0.137 4.137 12 N -0.505 5.505 13 Si 0.744 3.256 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.063 4.063 18 H 0.154 0.846 19 C -0.193 4.193 20 C 0.316 3.684 21 O -0.352 6.352 22 N -0.321 5.321 23 C -0.076 4.076 24 C 0.283 3.717 25 O -0.345 6.345 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.153 0.847 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.063 -18.016 14.362 23.040 hybrid contribution 1.123 2.301 1.861 3.165 sum 1.060 -15.715 16.222 22.611 Atomic orbital electron populations 1.21720 0.95353 1.01671 1.02199 1.21536 0.95945 0.96065 1.02157 1.22494 0.85790 0.98091 1.02735 1.62492 1.06646 1.18843 1.34553 1.22431 1.00184 0.86863 0.98943 1.21259 1.01128 0.95001 0.95511 1.23237 1.02417 0.97437 1.03298 1.84604 1.68556 1.16855 1.19878 1.22649 1.36508 0.98951 1.08532 0.91070 1.24998 0.95117 0.98943 0.94592 1.70006 1.36660 1.36111 1.07738 0.86238 0.79579 0.82129 0.77682 1.19915 1.20771 1.19958 1.22797 0.96343 0.99718 0.87472 0.84571 1.22668 0.93163 1.03401 1.00105 1.20924 0.85713 0.78653 0.83128 1.90784 1.14127 1.58574 1.71673 1.46787 1.09593 1.47006 1.28744 1.21942 1.03819 0.95338 0.86530 1.22196 0.82385 0.80976 0.86106 1.90756 1.32374 1.52748 1.58590 0.92259 0.92626 0.92773 0.90769 0.92520 0.92646 0.89046 0.90667 0.94494 0.91244 0.90291 0.92134 0.92415 0.92228 0.85535 0.84713 0.90985 0.89384 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.00 5.66 -26.73 -0.15 -1.15 16 3 C 0.04 0.38 4.70 -3.83 -0.02 0.36 16 4 N -0.50 -5.19 4.47 -226.90 -1.02 -6.21 16 5 C 0.04 0.56 4.07 -3.82 -0.02 0.55 16 6 C -0.09 -1.40 5.15 -26.73 -0.14 -1.54 16 7 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 8 S -0.13 -3.29 21.44 -107.50 -2.30 -5.60 16 9 C -0.52 -14.87 9.50 30.94 0.29 -14.57 16 10 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 11 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 13 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.05 0.41 3.00 -67.92 -0.20 0.21 16 18 H 0.14 0.87 6.12 -51.93 -0.32 0.56 16 19 C -0.15 -1.13 6.07 -26.94 -0.16 -1.30 16 20 C 0.53 5.38 7.98 -11.08 -0.09 5.30 16 21 O -0.48 -6.35 17.48 5.61 0.10 -6.25 16 22 N -0.58 -5.84 2.95 -122.73 -0.36 -6.20 16 23 C 0.06 0.56 10.58 59.85 0.63 1.20 16 24 C 0.50 5.33 5.82 -11.09 -0.06 5.26 16 25 O -0.47 -6.38 15.75 5.60 0.09 -6.29 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 31 H 0.06 0.67 6.27 -51.93 -0.33 0.35 16 32 H 0.09 1.05 6.19 -51.93 -0.32 0.73 16 33 H 0.07 0.91 6.33 -51.93 -0.33 0.59 16 34 H 0.04 0.52 7.34 -51.93 -0.38 0.14 16 35 H 0.07 1.09 6.42 -51.93 -0.33 0.76 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.14 1.04 6.84 -51.93 -0.36 0.69 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.75 7.83 -51.93 -0.41 0.34 16 44 H 0.09 0.76 7.83 -51.93 -0.41 0.36 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -33.57 366.90 -8.55 -42.12 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.87 Total: -1.83 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 0.57 Total: -6.64 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.64 Total: -37.60 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.19 Total: -12.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.30 Total: -5.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.57 -8.55 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338328950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.606 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds