Wall clock time and date at job start Tue Mar 31 2020 10:50:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52996 * 109.47343 * 2 1
4 4 N 1.46901 * 109.46995 * 185.86305 * 3 2 1
5 5 C 1.46899 * 110.99921 * 173.11379 * 4 3 2
6 6 C 1.53003 * 109.46833 * 293.95079 * 5 4 3
7 7 C 1.53002 * 109.47138 * 180.02562 * 6 5 4
8 8 S 1.80998 * 109.47217 * 180.02562 * 7 6 5
9 9 C 1.76201 * 100.00006 * 179.97438 * 8 7 6
10 10 H 1.07999 * 119.99947 * 359.97438 * 9 8 7
11 11 C 1.38799 * 120.00010 * 180.02562 * 9 8 7
12 12 N 1.31632 * 120.00033 * 359.97438 * 11 9 8
13 13 Si 1.86803 * 120.00006 * 180.02562 * 11 9 8
14 14 H 1.48501 * 109.47078 * 59.99690 * 13 11 9
15 15 H 1.48498 * 109.47147 * 179.97438 * 13 11 9
16 16 H 1.48505 * 109.46929 * 300.00029 * 13 11 9
17 17 C 1.46904 * 110.99914 * 297.06383 * 4 3 2
18 18 H 1.09003 * 110.54054 * 49.15902 * 17 4 3
19 19 C 1.54226 * 110.60347 * 172.17567 * 17 4 3
20 20 C 1.51315 * 103.55612 * 118.51927 * 19 17 4
21 21 O 1.21221 * 125.39546 * 179.97438 * 20 19 17
22 22 N 1.33879 * 109.20579 * 359.97438 * 20 19 17
23 23 C 1.46498 * 122.76122 * 179.97438 * 22 20 19
24 24 C 1.33870 * 114.47359 * 0.02562 * 22 20 19
25 25 O 1.21230 * 125.39380 * 180.02562 * 24 22 20
26 26 H 1.09004 * 109.47102 * 59.99673 * 1 2 3
27 27 H 1.08995 * 109.47770 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47011 * 300.00423 * 1 2 3
29 29 H 1.09001 * 109.47011 * 239.99576 * 2 1 3
30 30 H 1.09004 * 109.47102 * 120.00327 * 2 1 3
31 31 H 1.08994 * 109.47415 * 65.86190 * 3 2 1
32 32 H 1.08996 * 109.47138 * 305.85736 * 3 2 1
33 33 H 1.09002 * 109.47102 * 173.95564 * 5 4 3
34 34 H 1.08995 * 109.47597 * 53.95070 * 5 4 3
35 35 H 1.08993 * 109.47028 * 60.00075 * 6 5 4
36 36 H 1.08999 * 109.47030 * 299.99586 * 6 5 4
37 37 H 1.08997 * 109.47215 * 59.99464 * 7 6 5
38 38 H 1.09008 * 109.46825 * 300.00094 * 7 6 5
39 39 H 0.96996 * 119.99938 * 180.02562 * 12 11 9
40 40 H 1.09007 * 110.60196 * 237.03182 * 19 17 4
41 41 H 1.08997 * 110.61089 * 359.97438 * 19 17 4
42 42 H 1.08994 * 109.47548 * 270.00373 * 23 22 20
43 43 H 1.09004 * 109.46925 * 30.00784 * 23 22 20
44 44 H 1.08996 * 109.46895 * 149.99841 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 3.5022 1.4448 -0.1415
5 6 4.0127 2.8119 -0.3094
6 6 3.5173 3.3813 -1.6403
7 6 4.0494 4.8051 -1.8156
8 16 3.4628 5.4790 -3.3897
9 6 4.2020 7.0774 -3.3327
10 1 4.8052 7.3634 -2.4837
11 6 4.0082 7.9693 -4.3783
12 7 3.2726 7.6209 -5.4128
13 14 4.7925 9.6637 -4.3182
14 1 6.2685 9.5233 -4.2353
15 1 4.4357 10.4182 -5.5465
16 1 4.2971 10.3964 -3.1252
17 6 4.1427 0.7804 1.0015
18 1 3.6745 -0.1849 1.1943
19 6 5.6559 0.6138 0.7542
20 6 6.2882 1.4152 1.8711
21 8 7.4793 1.5508 2.0507
22 7 5.3236 1.9509 2.6294
23 6 5.6068 2.7869 3.7986
24 6 4.0791 1.6588 2.2319
25 8 3.0623 2.0386 2.7717
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 1.8933 -0.5139 -0.8900
30 1 1.8933 -0.5139 0.8900
31 1 1.7650 1.9251 0.9377
32 1 1.5936 1.9857 -0.8329
33 1 5.1025 2.7960 -0.3042
34 1 3.6545 3.4366 0.5088
35 1 2.4275 3.3972 -1.6456
36 1 3.8756 2.7567 -2.4586
37 1 5.1393 4.7888 -1.8104
38 1 3.6915 5.4300 -0.9973
39 1 3.1375 8.2441 -6.1437
40 1 5.9429 -0.4355 0.8249
41 1 5.9333 1.0234 -0.2170
42 1 5.6819 2.1579 4.6855
43 1 6.5478 3.3160 3.6476
44 1 4.8015 3.5091 3.9324
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000338328950.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:50:56
Heat of formation + Delta-G solvation = -70.727408 kcal
Electronic energy + Delta-G solvation = -24488.362102 eV
Core-core repulsion = 20953.016408 eV
Total energy + Delta-G solvation = -3535.345693 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.145 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.43385 -39.16140 -37.97076 -36.11980 -34.09591 -33.56356 -32.43655 -31.09328
-27.39943 -26.84050 -26.30553 -25.54842 -23.85304 -22.28439 -21.62689 -20.89076
-19.49743 -17.64039 -17.58857 -17.31907 -16.72071 -15.90978 -15.55521 -15.46705
-14.94380 -14.81650 -14.77816 -14.42209 -14.17575 -14.03175 -13.51758 -13.26878
-13.04449 -12.90376 -12.82108 -12.64883 -12.17161 -12.14567 -11.85702 -11.71781
-11.42348 -11.10986 -11.06295 -11.03071 -10.84331 -10.80227 -10.65059 -10.47067
-10.28493 -10.10853 -9.58193 -9.05825 -8.62549 -8.33061 -6.54079 -6.23484
-3.93992 1.14404 2.19684 2.34198 3.18910 3.23010 3.27273 3.34990
3.61345 3.71904 3.92441 4.06872 4.21790 4.55476 4.75814 4.83839
4.90554 4.95337 4.99638 5.10351 5.12575 5.16604 5.20161 5.28727
5.31077 5.34415 5.37561 5.52015 5.58144 5.63921 5.66445 5.79069
5.89972 5.94706 6.04675 6.13300 6.26260 6.43234 6.49064 6.58922
6.71670 6.77203 6.96415 7.42008 7.59597 8.35630 9.22857 10.84643
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.013081 B = 0.003351 C = 0.002878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2139.975227 B = 8354.852659 C = 9727.753667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.119 4.119
3 C 0.036 3.964
4 N -0.502 5.502
5 C 0.044 3.956
6 C -0.090 4.090
7 C -0.115 4.115
8 S -0.127 6.127
9 C -0.518 4.518
10 H 0.071 0.929
11 C 0.072 3.928
12 N -0.870 5.870
13 Si 0.917 3.083
14 H -0.274 1.274
15 H -0.282 1.282
16 H -0.274 1.274
17 C 0.049 3.951
18 H 0.137 0.863
19 C -0.154 4.154
20 C 0.527 3.473
21 O -0.480 6.480
22 N -0.577 5.577
23 C 0.065 3.935
24 C 0.497 3.503
25 O -0.475 6.475
26 H 0.058 0.942
27 H 0.055 0.945
28 H 0.053 0.947
29 H 0.074 0.926
30 H 0.056 0.944
31 H 0.055 0.945
32 H 0.091 0.909
33 H 0.075 0.925
34 H 0.037 0.963
35 H 0.069 0.931
36 H 0.078 0.922
37 H 0.060 0.940
38 H 0.057 0.943
39 H 0.268 0.732
40 H 0.127 0.873
41 H 0.135 0.865
42 H 0.071 0.929
43 H 0.087 0.913
44 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.466 -17.661 15.360 23.410
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.157 4.157
3 C -0.091 4.091
4 N -0.225 5.225
5 C -0.084 4.084
6 C -0.129 4.129
7 C -0.264 4.264
8 S 0.101 5.899
9 C -0.666 4.666
10 H 0.089 0.911
11 C -0.137 4.137
12 N -0.505 5.505
13 Si 0.744 3.256
14 H -0.199 1.199
15 H -0.208 1.208
16 H -0.200 1.200
17 C -0.063 4.063
18 H 0.154 0.846
19 C -0.193 4.193
20 C 0.316 3.684
21 O -0.352 6.352
22 N -0.321 5.321
23 C -0.076 4.076
24 C 0.283 3.717
25 O -0.345 6.345
26 H 0.077 0.923
27 H 0.074 0.926
28 H 0.072 0.928
29 H 0.092 0.908
30 H 0.075 0.925
31 H 0.074 0.926
32 H 0.110 0.890
33 H 0.093 0.907
34 H 0.055 0.945
35 H 0.088 0.912
36 H 0.097 0.903
37 H 0.079 0.921
38 H 0.076 0.924
39 H 0.078 0.922
40 H 0.145 0.855
41 H 0.153 0.847
42 H 0.090 0.910
43 H 0.106 0.894
44 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -0.063 -18.016 14.362 23.040
hybrid contribution 1.123 2.301 1.861 3.165
sum 1.060 -15.715 16.222 22.611
Atomic orbital electron populations
1.21720 0.95353 1.01671 1.02199 1.21536 0.95945 0.96065 1.02157
1.22494 0.85790 0.98091 1.02735 1.62492 1.06646 1.18843 1.34553
1.22431 1.00184 0.86863 0.98943 1.21259 1.01128 0.95001 0.95511
1.23237 1.02417 0.97437 1.03298 1.84604 1.68556 1.16855 1.19878
1.22649 1.36508 0.98951 1.08532 0.91070 1.24998 0.95117 0.98943
0.94592 1.70006 1.36660 1.36111 1.07738 0.86238 0.79579 0.82129
0.77682 1.19915 1.20771 1.19958 1.22797 0.96343 0.99718 0.87472
0.84571 1.22668 0.93163 1.03401 1.00105 1.20924 0.85713 0.78653
0.83128 1.90784 1.14127 1.58574 1.71673 1.46787 1.09593 1.47006
1.28744 1.21942 1.03819 0.95338 0.86530 1.22196 0.82385 0.80976
0.86106 1.90756 1.32374 1.52748 1.58590 0.92259 0.92626 0.92773
0.90769 0.92520 0.92646 0.89046 0.90667 0.94494 0.91244 0.90291
0.92134 0.92415 0.92228 0.85535 0.84713 0.90985 0.89384 0.89522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16
2 C -0.12 -1.00 5.66 -26.73 -0.15 -1.15 16
3 C 0.04 0.38 4.70 -3.83 -0.02 0.36 16
4 N -0.50 -5.19 4.47 -226.90 -1.02 -6.21 16
5 C 0.04 0.56 4.07 -3.82 -0.02 0.55 16
6 C -0.09 -1.40 5.15 -26.73 -0.14 -1.54 16
7 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16
8 S -0.13 -3.29 21.44 -107.50 -2.30 -5.60 16
9 C -0.52 -14.87 9.50 30.94 0.29 -14.57 16
10 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16
11 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16
12 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16
13 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16
14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
17 C 0.05 0.41 3.00 -67.92 -0.20 0.21 16
18 H 0.14 0.87 6.12 -51.93 -0.32 0.56 16
19 C -0.15 -1.13 6.07 -26.94 -0.16 -1.30 16
20 C 0.53 5.38 7.98 -11.08 -0.09 5.30 16
21 O -0.48 -6.35 17.48 5.61 0.10 -6.25 16
22 N -0.58 -5.84 2.95 -122.73 -0.36 -6.20 16
23 C 0.06 0.56 10.58 59.85 0.63 1.20 16
24 C 0.50 5.33 5.82 -11.09 -0.06 5.26 16
25 O -0.47 -6.38 15.75 5.60 0.09 -6.29 16
26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
30 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16
31 H 0.06 0.67 6.27 -51.93 -0.33 0.35 16
32 H 0.09 1.05 6.19 -51.93 -0.32 0.73 16
33 H 0.07 0.91 6.33 -51.93 -0.33 0.59 16
34 H 0.04 0.52 7.34 -51.93 -0.38 0.14 16
35 H 0.07 1.09 6.42 -51.93 -0.33 0.76 16
36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16
37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16
38 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16
39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
40 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16
41 H 0.14 1.04 6.84 -51.93 -0.36 0.69 16
42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
43 H 0.09 0.75 7.83 -51.93 -0.41 0.34 16
44 H 0.09 0.76 7.83 -51.93 -0.41 0.36 16
LS Contribution 366.90 15.07 5.53 5.53
Total: -1.00 -33.57 366.90 -8.55 -42.12
By element:
Atomic # 1 Polarization: 5.04 SS G_CDS: -6.87 Total: -1.83 kcal
Atomic # 6 Polarization: -7.21 SS G_CDS: 0.57 Total: -6.64 kcal
Atomic # 7 Polarization: -36.95 SS G_CDS: -0.64 Total: -37.60 kcal
Atomic # 8 Polarization: -12.72 SS G_CDS: 0.19 Total: -12.54 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Atomic # 16 Polarization: -3.29 SS G_CDS: -2.30 Total: -5.60 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -33.57 -8.55 -42.12 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000338328950.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.606 kcal
(2) G-P(sol) polarization free energy of solvation -33.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.173 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.727 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds