Wall clock time and date at job start Tue Mar 31 2020 10:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47343 * 2 1 4 4 N 1.46901 * 109.46995 * 185.86305 * 3 2 1 5 5 C 1.46899 * 110.99921 * 173.11379 * 4 3 2 6 6 C 1.53003 * 109.46833 * 293.95079 * 5 4 3 7 7 C 1.53002 * 109.47138 * 180.02562 * 6 5 4 8 8 S 1.80998 * 109.47217 * 180.02562 * 7 6 5 9 9 C 1.76201 * 100.00006 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99947 * 359.97438 * 9 8 7 11 11 C 1.38799 * 120.00010 * 180.02562 * 9 8 7 12 12 N 1.31632 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00006 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47078 * 59.99690 * 13 11 9 15 15 H 1.48498 * 109.47147 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46929 * 300.00029 * 13 11 9 17 17 C 1.46904 * 110.99914 * 297.06383 * 4 3 2 18 18 H 1.09003 * 110.54054 * 49.15902 * 17 4 3 19 19 C 1.54226 * 110.60347 * 172.17567 * 17 4 3 20 20 C 1.51315 * 103.55612 * 118.51927 * 19 17 4 21 21 O 1.21221 * 125.39546 * 179.97438 * 20 19 17 22 22 N 1.33879 * 109.20579 * 359.97438 * 20 19 17 23 23 C 1.46498 * 122.76122 * 179.97438 * 22 20 19 24 24 C 1.33870 * 114.47359 * 0.02562 * 22 20 19 25 25 O 1.21230 * 125.39380 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.47102 * 59.99673 * 1 2 3 27 27 H 1.08995 * 109.47770 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47011 * 300.00423 * 1 2 3 29 29 H 1.09001 * 109.47011 * 239.99576 * 2 1 3 30 30 H 1.09004 * 109.47102 * 120.00327 * 2 1 3 31 31 H 1.08994 * 109.47415 * 65.86190 * 3 2 1 32 32 H 1.08996 * 109.47138 * 305.85736 * 3 2 1 33 33 H 1.09002 * 109.47102 * 173.95564 * 5 4 3 34 34 H 1.08995 * 109.47597 * 53.95070 * 5 4 3 35 35 H 1.08993 * 109.47028 * 60.00075 * 6 5 4 36 36 H 1.08999 * 109.47030 * 299.99586 * 6 5 4 37 37 H 1.08997 * 109.47215 * 59.99464 * 7 6 5 38 38 H 1.09008 * 109.46825 * 300.00094 * 7 6 5 39 39 H 0.96996 * 119.99938 * 180.02562 * 12 11 9 40 40 H 1.09007 * 110.60196 * 237.03182 * 19 17 4 41 41 H 1.08997 * 110.61089 * 359.97438 * 19 17 4 42 42 H 1.08994 * 109.47548 * 270.00373 * 23 22 20 43 43 H 1.09004 * 109.46925 * 30.00784 * 23 22 20 44 44 H 1.08996 * 109.46895 * 149.99841 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5022 1.4448 -0.1415 5 6 4.0127 2.8119 -0.3094 6 6 3.5173 3.3813 -1.6403 7 6 4.0494 4.8051 -1.8156 8 16 3.4628 5.4790 -3.3897 9 6 4.2020 7.0774 -3.3327 10 1 4.8052 7.3634 -2.4837 11 6 4.0082 7.9693 -4.3783 12 7 3.2726 7.6209 -5.4128 13 14 4.7925 9.6637 -4.3182 14 1 6.2685 9.5233 -4.2353 15 1 4.4357 10.4182 -5.5465 16 1 4.2971 10.3964 -3.1252 17 6 4.1427 0.7804 1.0015 18 1 3.6745 -0.1849 1.1943 19 6 5.6559 0.6138 0.7542 20 6 6.2882 1.4152 1.8711 21 8 7.4793 1.5508 2.0507 22 7 5.3236 1.9509 2.6294 23 6 5.6068 2.7869 3.7986 24 6 4.0791 1.6588 2.2319 25 8 3.0623 2.0386 2.7717 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7650 1.9251 0.9377 32 1 1.5936 1.9857 -0.8329 33 1 5.1025 2.7960 -0.3042 34 1 3.6545 3.4366 0.5088 35 1 2.4275 3.3972 -1.6456 36 1 3.8756 2.7567 -2.4586 37 1 5.1393 4.7888 -1.8104 38 1 3.6915 5.4300 -0.9973 39 1 3.1375 8.2441 -6.1437 40 1 5.9429 -0.4355 0.8249 41 1 5.9333 1.0234 -0.2170 42 1 5.6819 2.1579 4.6855 43 1 6.5478 3.3160 3.6476 44 1 4.8015 3.5091 3.9324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338328950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:55 Heat of formation + Delta-G solvation = -93.021784 kcal Electronic energy + Delta-G solvation = -24489.328858 eV Core-core repulsion = 20953.016408 eV Total energy + Delta-G solvation = -3536.312450 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.24336 -40.04665 -38.88316 -37.00325 -35.12875 -34.61259 -34.40024 -32.01493 -28.18507 -28.07351 -27.51960 -27.07628 -24.87055 -23.15421 -22.58944 -21.84921 -20.32576 -19.59204 -18.39645 -18.27347 -17.58482 -16.90496 -16.85094 -16.60373 -16.38326 -15.97382 -15.84029 -15.48749 -15.37575 -14.94532 -14.79998 -14.30383 -14.05145 -13.81620 -13.62858 -13.58570 -13.46125 -13.20894 -13.07206 -12.91783 -12.87289 -12.56202 -12.43134 -12.38924 -11.95558 -11.83283 -11.72310 -11.45615 -11.32918 -11.25452 -11.14313 -10.93914 -10.34626 -9.53465 -8.67074 -8.38433 -6.14395 0.31434 1.29937 1.39230 1.43921 1.45882 1.55393 1.71383 2.26525 2.55559 2.95808 2.99182 3.21180 3.28484 3.35773 3.78062 3.88441 4.01081 4.12691 4.22432 4.25337 4.27935 4.30206 4.32526 4.34661 4.49490 4.55202 4.62671 4.64102 4.69854 4.71536 4.85592 4.91657 4.97631 5.09751 5.24007 5.25660 5.36588 5.38077 5.45377 5.64199 5.77010 5.83299 6.15691 6.16487 6.61179 7.03907 8.70660 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.003351 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.975227 B = 8354.852659 C = 9727.753667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.037 3.963 4 N -0.494 5.494 5 C 0.057 3.943 6 C -0.079 4.079 7 C -0.091 4.091 8 S -0.185 6.185 9 C -0.543 4.543 10 H 0.070 0.930 11 C 0.019 3.981 12 N -0.905 5.905 13 Si 0.990 3.010 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.266 1.266 17 C 0.054 3.946 18 H 0.167 0.833 19 C -0.142 4.142 20 C 0.527 3.473 21 O -0.513 6.513 22 N -0.581 5.581 23 C 0.059 3.941 24 C 0.495 3.505 25 O -0.505 6.505 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.272 0.728 40 H 0.165 0.835 41 H 0.137 0.863 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -18.946 15.978 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.090 4.090 4 N -0.218 5.218 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.241 4.241 8 S 0.043 5.957 9 C -0.691 4.691 10 H 0.088 0.912 11 C -0.186 4.186 12 N -0.542 5.542 13 Si 0.812 3.188 14 H -0.189 1.189 15 H -0.198 1.198 16 H -0.191 1.191 17 C -0.058 4.058 18 H 0.184 0.816 19 C -0.182 4.182 20 C 0.318 3.682 21 O -0.387 6.387 22 N -0.324 5.324 23 C -0.082 4.082 24 C 0.283 3.717 25 O -0.377 6.377 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.183 0.817 41 H 0.155 0.845 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.732 -19.317 14.983 24.457 hybrid contribution 0.851 2.651 1.744 3.285 sum 1.583 -16.666 16.727 23.665 Atomic orbital electron populations 1.21727 0.95319 1.02417 1.01529 1.21503 0.95935 0.94371 1.03188 1.22483 0.85808 0.99549 1.01206 1.62473 1.06648 1.17044 1.35594 1.22180 1.00599 0.88064 0.96409 1.21128 1.00812 0.92381 0.97401 1.23162 1.02375 0.99434 0.99084 1.84560 1.69532 1.16890 1.24682 1.23011 1.36923 1.00251 1.08891 0.91213 1.26014 0.95421 1.03260 0.93954 1.70133 1.37823 1.37733 1.08479 0.85119 0.78815 0.76671 0.78151 1.18946 1.19769 1.19134 1.23005 0.97317 1.00022 0.85468 0.81590 1.22764 0.91526 1.05129 0.98733 1.21394 0.85199 0.78210 0.83414 1.90774 1.15460 1.59837 1.72617 1.46925 1.09639 1.46832 1.29022 1.22042 1.03559 0.95612 0.86951 1.22570 0.81966 0.80683 0.86439 1.90748 1.33351 1.53962 1.59685 0.92991 0.91150 0.93450 0.90001 0.91040 0.94333 0.90479 0.89694 0.95963 0.91609 0.89978 0.91840 0.92925 0.91886 0.81723 0.84491 0.89386 0.89417 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.11 -1.61 5.66 30.59 0.17 -1.44 16 3 C 0.04 0.73 4.70 86.30 0.41 1.13 16 4 N -0.49 -9.22 4.47 -871.79 -3.90 -13.12 16 5 C 0.06 1.37 4.07 86.30 0.35 1.72 16 6 C -0.08 -2.40 5.15 30.60 0.16 -2.24 16 7 C -0.09 -3.63 5.67 71.98 0.41 -3.23 16 8 S -0.19 -9.80 21.44 -56.49 -1.21 -11.02 16 9 C -0.54 -31.56 9.50 67.95 0.65 -30.91 16 10 H 0.07 3.92 7.80 -2.91 -0.02 3.90 16 11 C 0.02 1.07 5.49 84.86 0.47 1.54 16 12 N -0.91 -54.60 13.22 21.65 0.29 -54.31 16 13 Si 0.99 44.11 29.55 68.60 2.03 46.13 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 C 0.05 0.75 3.00 44.78 0.13 0.89 16 18 H 0.17 1.42 6.12 -2.39 -0.01 1.41 16 19 C -0.14 -1.62 6.07 30.46 0.18 -1.44 16 20 C 0.53 9.77 7.98 87.99 0.70 10.48 16 21 O -0.51 -12.92 17.48 -2.85 -0.05 -12.97 16 22 N -0.58 -10.99 2.95 -780.05 -2.30 -13.30 16 23 C 0.06 1.00 10.58 127.77 1.35 2.35 16 24 C 0.50 9.88 5.82 87.99 0.51 10.39 16 25 O -0.51 -13.25 15.75 -2.87 -0.05 -13.30 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.83 6.56 -2.39 -0.02 0.81 16 31 H 0.04 0.92 6.27 -2.39 -0.01 0.90 16 32 H 0.08 1.75 6.19 -2.39 -0.01 1.73 16 33 H 0.08 1.91 6.33 -2.39 -0.02 1.89 16 34 H 0.02 0.61 7.34 -2.39 -0.02 0.60 16 35 H 0.07 2.08 6.42 -2.39 -0.02 2.06 16 36 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.06 2.48 8.14 -2.40 -0.02 2.47 16 38 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.17 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.14 1.65 6.84 -2.39 -0.02 1.64 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.47 7.83 -2.39 -0.02 1.45 16 44 H 0.08 1.44 7.83 -2.39 -0.02 1.42 16 Total: -1.00 -73.83 366.90 2.00 -71.83 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.99 Total: 12.31 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 6.21 Total: -12.27 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -5.92 Total: -80.73 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.10 Total: -26.26 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -1.21 Total: -11.02 kcal Total: -73.83 2.00 -71.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338328950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.194 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds