Wall clock time and date at job start Tue Mar 31 2020 10:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 H 1.09010 * 109.59920 * 304.68253 * 3 2 1 5 5 C 1.53177 * 109.60718 * 184.19203 * 3 2 1 6 6 N 1.46472 * 109.90068 * 177.60625 * 5 3 2 7 7 C 1.46904 * 111.00053 * 196.99890 * 6 5 3 8 8 C 1.52997 * 109.47235 * 183.20386 * 7 6 5 9 9 H 1.09006 * 109.46854 * 59.66733 * 8 7 6 10 10 C 1.47196 * 109.46993 * 299.66621 * 8 7 6 11 11 N 6.83255 * 115.15267 * 339.57980 * 2 1 3 12 12 C 1.52998 * 109.46998 * 179.66557 * 8 7 6 13 13 C 1.50703 * 109.47196 * 184.99870 * 12 8 7 14 14 H 1.08005 * 119.99760 * 0.02562 * 13 12 8 15 15 C 1.37875 * 120.00100 * 179.97438 * 13 12 8 16 16 N 1.31518 * 119.99792 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00063 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.46894 * 90.00028 * 17 15 13 19 19 H 1.48499 * 109.46957 * 209.99730 * 17 15 13 20 20 H 1.48502 * 109.46965 * 330.00133 * 17 15 13 21 21 C 1.46800 * 112.56009 * 71.98457 * 6 5 3 22 22 C 1.53185 * 109.71721 * 288.14720 * 21 6 5 23 23 H 1.09001 * 109.59735 * 182.37781 * 22 21 6 24 24 C 1.52999 * 109.60448 * 302.70027 * 22 21 6 25 25 S 1.81816 * 108.81555 * 62.54553 * 22 21 6 26 26 O 1.42102 * 108.70263 * 61.84894 * 25 22 21 27 27 O 1.42094 * 108.70373 * 193.20525 * 25 22 21 28 28 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47317 * 299.99766 * 1 2 3 30 30 H 1.08996 * 109.47624 * 59.99897 * 1 2 3 31 31 H 1.09004 * 109.47317 * 240.00234 * 2 1 3 32 32 H 1.08996 * 109.47624 * 120.00103 * 2 1 3 33 33 H 1.09005 * 109.40032 * 297.73941 * 5 3 2 34 34 H 1.09002 * 109.39951 * 57.56001 * 5 3 2 35 35 H 1.09003 * 109.47120 * 303.20609 * 7 6 5 36 36 H 1.09001 * 109.46941 * 63.20194 * 7 6 5 37 37 H 1.08998 * 109.47116 * 305.00068 * 12 8 7 38 38 H 1.08996 * 109.47521 * 65.00233 * 12 8 7 39 39 H 0.96992 * 119.99849 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.62858 * 167.98486 * 21 6 5 41 41 H 1.08993 * 109.34531 * 48.13759 * 21 6 5 42 42 H 1.09000 * 109.47235 * 179.67955 * 24 22 21 43 43 H 1.08994 * 109.47031 * 59.67935 * 24 22 21 44 44 H 1.09001 * 109.47459 * 299.67716 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6109 1.9820 -0.8445 5 6 3.5681 1.4474 -0.1055 6 7 4.0595 2.8260 -0.1634 7 6 5.4407 2.8721 -0.6615 8 6 5.9454 4.3161 -0.6325 9 1 5.9098 4.6929 0.3898 10 6 5.0924 5.1514 -1.4934 11 7 4.4340 5.7960 -2.1578 12 6 7.3869 4.3629 -1.1433 13 6 7.9254 5.7631 -1.0001 14 1 7.3020 6.5417 -0.5857 15 6 9.2142 6.0500 -1.3971 16 7 9.6843 7.2719 -1.2716 17 14 10.2926 4.7033 -2.1131 18 1 10.1138 4.6570 -3.5865 19 1 11.7153 4.9872 -1.7958 20 1 9.9060 3.3951 -1.5263 21 6 3.9432 3.5200 1.1249 22 6 2.4708 3.8269 1.4156 23 1 2.3904 4.3793 2.3518 24 6 1.8858 4.6622 0.2750 25 16 1.5608 2.2589 1.5524 26 8 2.0933 1.5165 2.6408 27 8 0.1676 2.5357 1.5139 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9927 0.9479 0.7654 34 1 3.8703 0.9183 -1.0093 35 1 6.0760 2.2523 -0.0286 36 1 5.4708 2.4971 -1.6845 37 1 8.0011 3.6760 -0.5612 38 1 7.4100 4.0704 -2.1931 39 1 10.5908 7.4738 -1.5512 40 1 4.5075 4.4519 1.0911 41 1 4.3433 2.8844 1.9148 42 1 0.8367 4.8746 0.4812 43 1 1.9673 4.1080 -0.6600 44 1 2.4364 5.5992 0.1912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347315381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:41 Heat of formation + Delta-G solvation = -44.551481 kcal Electronic energy + Delta-G solvation = -25402.832271 eV Core-core repulsion = 21868.621651 eV Total energy + Delta-G solvation = -3534.210620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.42178 -37.20680 -36.57532 -36.25226 -35.31435 -34.13586 -33.09519 -31.79196 -29.56961 -27.46173 -26.34799 -23.77654 -23.27551 -22.24825 -21.54967 -21.01533 -18.76460 -17.33652 -17.25950 -16.96716 -16.58863 -15.89142 -15.74185 -15.43593 -15.00201 -14.39809 -14.30496 -14.10773 -13.72686 -13.36388 -13.19841 -12.95448 -12.83257 -12.74057 -12.57329 -12.32484 -12.21820 -12.17146 -12.04590 -11.96371 -11.69406 -11.61057 -11.47411 -11.39596 -11.36955 -11.33203 -10.89276 -10.68169 -10.35855 -10.10644 -9.95077 -9.87199 -9.41618 -8.69999 -8.62115 -6.18498 -4.20146 -0.16764 2.45347 3.20675 3.27031 3.27425 3.29676 3.42279 3.55310 3.63615 3.85856 4.11887 4.28526 4.30762 4.35029 4.58450 4.64804 4.69377 4.78925 4.87945 4.98104 5.14495 5.16213 5.24306 5.27525 5.31850 5.41277 5.42364 5.51722 5.59290 5.64570 5.70878 5.72141 5.74279 5.92550 6.02067 6.14039 6.14372 6.64943 6.71443 6.82544 6.98400 7.53805 8.30745 8.39992 8.83948 9.40855 10.94452 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.003550 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.248670 B = 7885.533158 C = 8245.860809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.107 4.107 3 C -0.555 4.555 4 H 0.147 0.853 5 C 0.070 3.930 6 N -0.556 5.556 7 C 0.065 3.935 8 C 0.011 3.989 9 H 0.109 0.891 10 C 0.248 3.752 11 N -0.462 5.462 12 C -0.005 4.005 13 C -0.531 4.531 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.263 1.263 21 C 0.052 3.948 22 C -0.554 4.554 23 H 0.140 0.860 24 C -0.131 4.131 25 S 2.406 3.594 26 O -0.941 6.941 27 O -0.939 6.939 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.023 0.977 39 H 0.265 0.735 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.096 -15.402 4.561 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.146 4.146 3 C -0.666 4.666 4 H 0.165 0.835 5 C -0.058 4.058 6 N -0.280 5.280 7 C -0.063 4.063 8 C -0.010 4.010 9 H 0.127 0.873 10 C -0.070 4.070 11 N -0.138 5.138 12 C -0.044 4.044 13 C -0.568 4.568 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.077 4.077 22 C -0.665 4.665 23 H 0.158 0.842 24 C -0.189 4.189 25 S 2.589 3.411 26 O -0.938 6.938 27 O -0.936 6.936 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.784 -14.368 3.905 21.698 hybrid contribution 1.984 -0.728 -0.220 2.125 sum -13.800 -15.096 3.685 20.782 Atomic orbital electron populations 1.22141 0.94587 1.03219 1.03785 1.21322 0.96578 0.91921 1.04739 1.30086 1.05121 1.08839 1.22510 0.83490 1.21840 0.89981 0.89785 1.04230 1.61295 1.23849 1.15493 1.27405 1.22277 0.85863 0.96522 1.01627 1.19170 0.94451 0.89798 0.97622 0.87302 1.28610 0.91879 0.92969 0.93499 1.81023 1.12364 1.10097 1.10329 1.19646 0.88419 0.99478 0.96836 1.20985 0.99005 0.93448 1.43402 0.90798 1.24989 0.97803 0.95329 0.94922 1.69899 1.16947 1.19204 1.47228 0.86814 0.79984 0.82778 0.79923 1.20223 1.21223 1.18742 1.22167 0.92769 1.02380 0.90335 1.30005 1.08278 1.19736 1.08442 0.84221 1.21533 1.00560 1.00954 0.95838 1.08673 0.76290 0.78311 0.77819 1.93565 1.81004 1.69734 1.49527 1.93558 1.28659 1.84485 1.86873 0.91291 0.91426 0.91422 0.89314 0.90256 0.92247 0.88110 0.92012 0.89179 0.94378 0.95918 0.92474 0.86838 0.91940 0.91329 0.90191 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.58 37.15 0.36 -1.10 16 2 C -0.11 -0.80 5.40 -26.73 -0.14 -0.95 16 3 C -0.56 -4.74 2.27 -26.64 -0.06 -4.80 16 4 H 0.15 1.15 7.39 -51.92 -0.38 0.76 16 5 C 0.07 0.59 4.70 -3.97 -0.02 0.57 16 6 N -0.56 -5.75 3.26 -234.84 -0.76 -6.52 16 7 C 0.06 0.74 4.46 -3.82 -0.02 0.72 16 8 C 0.01 0.18 1.75 -93.41 -0.16 0.01 16 9 H 0.11 1.58 5.94 -51.93 -0.31 1.27 16 10 C 0.25 4.54 13.37 -20.76 -0.28 4.26 16 11 N -0.46 -9.39 18.54 42.15 0.78 -8.61 16 12 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 13 C -0.53 -13.56 9.15 -34.44 -0.32 -13.87 16 14 H 0.07 2.08 7.84 -52.48 -0.41 1.67 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -26.22 13.96 55.43 0.77 -25.45 16 17 Si 0.88 19.83 27.47 -169.99 -4.67 15.16 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 21 C 0.05 0.54 4.61 -3.78 -0.02 0.52 16 22 C -0.55 -5.57 3.40 -26.64 -0.09 -5.66 16 23 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 24 C -0.13 -1.42 8.80 37.16 0.33 -1.10 16 25 S 2.41 26.16 3.83 -107.50 -0.41 25.75 16 26 O -0.94 -12.54 17.95 -57.81 -1.04 -13.58 16 27 O -0.94 -12.40 15.71 -57.81 -0.91 -13.30 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.66 5.82 -51.93 -0.30 0.36 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 33 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 34 H 0.10 0.70 7.96 -51.93 -0.41 0.29 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 37 H 0.04 0.70 7.20 -51.93 -0.37 0.33 16 38 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.11 1.24 5.17 -51.93 -0.27 0.97 16 41 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 42 H 0.07 0.69 7.95 -51.93 -0.41 0.27 16 43 H 0.08 0.87 6.46 -51.93 -0.34 0.54 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -33.43 356.40 -8.45 -41.88 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.97 Total: -0.97 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -0.62 Total: -19.74 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.79 Total: -40.58 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.95 Total: -26.88 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Atomic # 16 Polarization: 26.16 SS G_CDS: -0.41 Total: 25.75 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.43 -8.45 -41.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347315381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.672 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds