Wall clock time and date at job start Tue Mar 31 2020 10:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 H 1.09010 * 109.59920 * 304.68253 * 3 2 1 5 5 C 1.53177 * 109.60718 * 184.19203 * 3 2 1 6 6 N 1.46472 * 109.90068 * 177.60625 * 5 3 2 7 7 C 1.46904 * 111.00053 * 196.99890 * 6 5 3 8 8 C 1.52997 * 109.47235 * 183.20386 * 7 6 5 9 9 H 1.09006 * 109.46854 * 59.66733 * 8 7 6 10 10 C 1.47196 * 109.46993 * 299.66621 * 8 7 6 11 11 N 6.83255 * 115.15267 * 339.57980 * 2 1 3 12 12 C 1.52998 * 109.46998 * 179.66557 * 8 7 6 13 13 C 1.50703 * 109.47196 * 184.99870 * 12 8 7 14 14 H 1.08005 * 119.99760 * 0.02562 * 13 12 8 15 15 C 1.37875 * 120.00100 * 179.97438 * 13 12 8 16 16 N 1.31518 * 119.99792 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00063 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.46894 * 90.00028 * 17 15 13 19 19 H 1.48499 * 109.46957 * 209.99730 * 17 15 13 20 20 H 1.48502 * 109.46965 * 330.00133 * 17 15 13 21 21 C 1.46800 * 112.56009 * 71.98457 * 6 5 3 22 22 C 1.53185 * 109.71721 * 288.14720 * 21 6 5 23 23 H 1.09001 * 109.59735 * 182.37781 * 22 21 6 24 24 C 1.52999 * 109.60448 * 302.70027 * 22 21 6 25 25 S 1.81816 * 108.81555 * 62.54553 * 22 21 6 26 26 O 1.42102 * 108.70263 * 61.84894 * 25 22 21 27 27 O 1.42094 * 108.70373 * 193.20525 * 25 22 21 28 28 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47317 * 299.99766 * 1 2 3 30 30 H 1.08996 * 109.47624 * 59.99897 * 1 2 3 31 31 H 1.09004 * 109.47317 * 240.00234 * 2 1 3 32 32 H 1.08996 * 109.47624 * 120.00103 * 2 1 3 33 33 H 1.09005 * 109.40032 * 297.73941 * 5 3 2 34 34 H 1.09002 * 109.39951 * 57.56001 * 5 3 2 35 35 H 1.09003 * 109.47120 * 303.20609 * 7 6 5 36 36 H 1.09001 * 109.46941 * 63.20194 * 7 6 5 37 37 H 1.08998 * 109.47116 * 305.00068 * 12 8 7 38 38 H 1.08996 * 109.47521 * 65.00233 * 12 8 7 39 39 H 0.96992 * 119.99849 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.62858 * 167.98486 * 21 6 5 41 41 H 1.08993 * 109.34531 * 48.13759 * 21 6 5 42 42 H 1.09000 * 109.47235 * 179.67955 * 24 22 21 43 43 H 1.08994 * 109.47031 * 59.67935 * 24 22 21 44 44 H 1.09001 * 109.47459 * 299.67716 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6109 1.9820 -0.8445 5 6 3.5681 1.4474 -0.1055 6 7 4.0595 2.8260 -0.1634 7 6 5.4407 2.8721 -0.6615 8 6 5.9454 4.3161 -0.6325 9 1 5.9098 4.6929 0.3898 10 6 5.0924 5.1514 -1.4934 11 7 4.4340 5.7960 -2.1578 12 6 7.3869 4.3629 -1.1433 13 6 7.9254 5.7631 -1.0001 14 1 7.3020 6.5417 -0.5857 15 6 9.2142 6.0500 -1.3971 16 7 9.6843 7.2719 -1.2716 17 14 10.2926 4.7033 -2.1131 18 1 10.1138 4.6570 -3.5865 19 1 11.7153 4.9872 -1.7958 20 1 9.9060 3.3951 -1.5263 21 6 3.9432 3.5200 1.1249 22 6 2.4708 3.8269 1.4156 23 1 2.3904 4.3793 2.3518 24 6 1.8858 4.6622 0.2750 25 16 1.5608 2.2589 1.5524 26 8 2.0933 1.5165 2.6408 27 8 0.1676 2.5357 1.5139 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9927 0.9479 0.7654 34 1 3.8703 0.9183 -1.0093 35 1 6.0760 2.2523 -0.0286 36 1 5.4708 2.4971 -1.6845 37 1 8.0011 3.6760 -0.5612 38 1 7.4100 4.0704 -2.1931 39 1 10.5908 7.4738 -1.5512 40 1 4.5075 4.4519 1.0911 41 1 4.3433 2.8844 1.9148 42 1 0.8367 4.8746 0.4812 43 1 1.9673 4.1080 -0.6600 44 1 2.4364 5.5992 0.1912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347315381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:40 Heat of formation + Delta-G solvation = -68.282745 kcal Electronic energy + Delta-G solvation = -25403.861336 eV Core-core repulsion = 21868.621651 eV Total energy + Delta-G solvation = -3535.239685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28451 -38.14924 -37.74516 -37.19349 -36.12647 -35.55809 -34.48233 -33.15956 -30.49708 -28.67329 -27.39540 -24.71363 -24.19406 -23.17473 -22.89561 -21.84014 -19.58605 -18.92253 -18.33416 -18.04408 -17.60104 -16.85398 -16.70804 -16.31711 -16.09490 -15.67990 -15.12207 -14.98278 -14.81697 -14.75590 -14.33068 -14.05540 -13.79389 -13.77295 -13.62339 -13.53687 -13.20052 -13.16309 -13.11547 -13.09595 -12.92787 -12.62043 -12.49724 -12.37170 -12.32713 -12.12280 -12.00231 -11.79859 -11.69265 -11.55020 -11.45453 -11.14606 -10.74587 -10.69451 -9.36182 -8.22530 -6.28151 -0.98186 1.46080 1.46739 1.57519 1.66418 2.11005 2.18191 2.43183 2.52983 2.63099 3.02351 3.14867 3.32972 3.41659 3.55589 3.64757 3.87955 3.91494 4.08621 4.17070 4.28329 4.33247 4.36798 4.48244 4.54032 4.69471 4.71289 4.72507 4.82493 4.85722 4.90131 4.95331 4.99263 5.06322 5.11143 5.24805 5.28709 5.34315 5.47007 5.65612 5.85136 5.98169 6.27823 6.80280 6.96620 7.36635 8.94342 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.003550 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.248670 B = 7885.533158 C = 8245.860809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.108 4.108 3 C -0.537 4.537 4 H 0.156 0.844 5 C 0.068 3.932 6 N -0.565 5.565 7 C 0.072 3.928 8 C 0.013 3.987 9 H 0.118 0.882 10 C 0.259 3.741 11 N -0.506 5.506 12 C -0.004 4.004 13 C -0.529 4.529 14 H 0.028 0.972 15 C 0.001 3.999 16 N -0.956 5.956 17 Si 0.947 3.053 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.218 1.218 21 C 0.047 3.953 22 C -0.551 4.551 23 H 0.151 0.849 24 C -0.130 4.130 25 S 2.402 3.598 26 O -0.969 6.969 27 O -0.971 6.971 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 -19.211 3.941 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.147 4.147 3 C -0.651 4.651 4 H 0.174 0.826 5 C -0.060 4.060 6 N -0.290 5.290 7 C -0.055 4.055 8 C -0.008 4.008 9 H 0.135 0.865 10 C -0.057 4.057 11 N -0.183 5.183 12 C -0.043 4.043 13 C -0.567 4.567 14 H 0.046 0.954 15 C -0.195 4.195 16 N -0.597 5.597 17 Si 0.770 3.230 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.140 1.140 21 C -0.081 4.081 22 C -0.663 4.663 23 H 0.168 0.832 24 C -0.188 4.188 25 S 2.589 3.411 26 O -0.966 6.966 27 O -0.968 6.968 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.335 -18.198 3.328 24.029 hybrid contribution 1.752 0.550 -0.013 1.837 sum -13.583 -17.647 3.315 22.515 Atomic orbital electron populations 1.22211 0.95373 1.04018 1.02875 1.21423 0.95959 0.91159 1.06149 1.29961 1.05772 1.09325 1.20025 0.82581 1.21999 0.89233 0.88731 1.06086 1.61215 1.23489 1.16948 1.27377 1.22217 0.86756 0.93207 1.03329 1.19295 0.91902 0.92556 0.97087 0.86464 1.29264 0.91321 0.92249 0.92882 1.81025 1.13912 1.11491 1.11878 1.19604 0.90906 0.95905 0.97908 1.21415 0.98306 0.95619 1.41381 0.95357 1.26052 0.99857 0.97824 0.95781 1.70094 1.17459 1.22215 1.49928 0.85717 0.77120 0.81280 0.78882 1.20331 1.22057 1.14030 1.22211 0.92447 1.02375 0.91105 1.29978 1.08235 1.19387 1.08650 0.83150 1.21498 1.00633 1.00332 0.96341 1.08611 0.75551 0.78305 0.78627 1.93524 1.81174 1.70276 1.51660 1.93518 1.30615 1.84979 1.87664 0.89729 0.93690 0.91027 0.86558 0.90069 0.91048 0.85526 0.88999 0.87844 0.91523 0.95238 0.92790 0.87848 0.90409 0.91014 0.90130 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 9.58 71.98 0.69 -1.99 16 2 C -0.11 -1.27 5.40 30.59 0.17 -1.11 16 3 C -0.54 -7.60 2.27 30.65 0.07 -7.53 16 4 H 0.16 1.99 7.39 -2.38 -0.02 1.97 16 5 C 0.07 0.84 4.70 86.44 0.41 1.24 16 6 N -0.57 -9.72 3.26 -896.90 -2.92 -12.64 16 7 C 0.07 1.32 4.46 86.30 0.38 1.70 16 8 C 0.01 0.38 1.75 -12.60 -0.02 0.35 16 9 H 0.12 3.19 5.94 -2.38 -0.01 3.18 16 10 C 0.26 9.28 13.37 89.44 1.20 10.48 16 11 N -0.51 -20.63 18.54 20.00 0.37 -20.26 16 12 C 0.00 -0.15 3.49 29.85 0.10 -0.05 16 13 C -0.53 -27.03 9.15 25.60 0.23 -26.80 16 14 H 0.03 1.65 7.84 -2.91 -0.02 1.63 16 15 C 0.00 0.07 5.47 84.65 0.46 0.53 16 16 N -0.96 -57.87 13.96 21.45 0.30 -57.57 16 17 Si 0.95 39.56 27.47 68.60 1.88 41.45 16 18 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.22 -7.50 6.54 99.48 0.65 -6.85 16 21 C 0.05 0.87 4.61 86.38 0.40 1.27 16 22 C -0.55 -10.55 3.40 30.66 0.10 -10.45 16 23 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 24 C -0.13 -2.80 8.80 71.98 0.63 -2.16 16 25 S 2.40 49.63 3.83 -56.49 -0.22 49.41 16 26 O -0.97 -24.76 17.95 -127.39 -2.29 -27.05 16 27 O -0.97 -25.68 15.71 -127.39 -2.00 -27.68 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 0.86 5.82 -2.38 -0.01 0.84 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 0.96 8.03 -2.39 -0.02 0.94 16 33 H 0.07 0.78 7.94 -2.38 -0.02 0.76 16 34 H 0.13 1.01 7.96 -2.39 -0.02 0.99 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.68 8.13 -2.39 -0.02 1.66 16 37 H 0.07 2.11 7.20 -2.39 -0.02 2.09 16 38 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 39 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.10 2.11 5.17 -2.39 -0.01 2.10 16 41 H 0.08 1.20 7.94 -2.39 -0.02 1.18 16 42 H 0.07 1.45 7.95 -2.39 -0.02 1.44 16 43 H 0.08 1.69 6.46 -2.39 -0.02 1.68 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -75.89 356.40 0.89 -75.00 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.93 Total: 13.85 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 4.83 Total: -34.51 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -2.25 Total: -90.48 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -4.29 Total: -54.73 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.88 Total: 41.45 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -0.22 Total: 49.41 kcal Total: -75.89 0.89 -75.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347315381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.720 kcal (2) G-P(sol) polarization free energy of solvation -75.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds