Wall clock time and date at job start Tue Mar 31 2020 10:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46571 * 2 1 4 4 H 1.09000 * 109.47410 * 55.00131 * 3 2 1 5 5 C 1.50708 * 109.46794 * 174.99952 * 3 2 1 6 6 H 1.07996 * 119.99927 * 120.00247 * 5 3 2 7 7 C 1.37871 * 119.99801 * 300.00013 * 5 3 2 8 8 N 1.31508 * 120.00306 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99904 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47227 * 90.00056 * 9 7 5 11 11 H 1.48498 * 109.46738 * 210.00049 * 9 7 5 12 12 H 1.48496 * 109.46700 * 330.00051 * 9 7 5 13 13 N 1.46496 * 109.47547 * 294.99972 * 3 2 1 14 14 C 1.34779 * 120.00180 * 85.00312 * 13 3 2 15 15 O 1.21618 * 119.99787 * 5.35508 * 14 13 3 16 16 C 1.47231 * 119.99948 * 185.35896 * 14 13 3 17 17 C 1.37009 * 127.19223 * 355.04041 * 16 14 13 18 18 N 1.33321 * 106.37145 * 180.30126 * 17 16 14 19 19 N 1.28504 * 109.43881 * 359.55459 * 18 17 16 20 20 N 1.28718 * 110.64289 * 0.46078 * 19 18 17 21 21 C 1.46501 * 126.04080 * 179.71552 * 20 19 18 22 22 C 1.50698 * 109.47331 * 275.26552 * 21 20 19 23 23 C 1.38233 * 119.99617 * 264.61268 * 22 21 20 24 24 C 1.38235 * 119.99697 * 179.76445 * 23 22 21 25 25 C 1.38228 * 120.00120 * 0.51004 * 24 23 22 26 26 C 1.38237 * 120.00211 * 359.74268 * 25 24 23 27 27 C 1.38237 * 120.00020 * 84.88330 * 22 21 20 28 28 H 1.09003 * 109.47568 * 299.99963 * 1 2 3 29 29 H 1.09000 * 109.47260 * 59.99837 * 1 2 3 30 30 H 1.09005 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46915 * 240.00228 * 2 1 3 32 32 H 1.09002 * 109.46946 * 119.99453 * 2 1 3 33 33 H 0.97003 * 120.00167 * 179.97438 * 8 7 5 34 34 H 0.97007 * 119.99771 * 265.00659 * 13 3 2 35 35 H 1.07999 * 126.80978 * 0.03293 * 17 16 14 36 36 H 1.09005 * 109.46330 * 35.26049 * 21 20 19 37 37 H 1.08994 * 109.47242 * 155.25979 * 21 20 19 38 38 H 1.07999 * 120.00282 * 359.97438 * 23 22 21 39 39 H 1.08008 * 119.99981 * 180.22561 * 24 23 22 40 40 H 1.08007 * 120.00260 * 179.72514 * 25 24 23 41 41 H 1.08000 * 120.00706 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00011 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8815 1.3819 10 1 6.4416 2.1143 2.0850 11 1 6.4395 -0.3096 2.1550 12 1 6.6135 0.8419 0.0279 13 7 1.6523 2.0976 -1.2517 14 6 0.4350 2.6645 -1.3669 15 8 -0.3043 2.7185 -0.4027 16 6 0.0002 3.2182 -2.6600 17 6 0.7409 3.3214 -3.8079 18 7 -0.0528 3.8866 -4.7178 19 7 -1.2052 4.1152 -4.1971 20 7 -1.2298 3.7388 -2.9665 21 6 -2.3712 3.8478 -2.0545 22 6 -2.3904 5.2218 -1.4357 23 6 -1.8127 5.4302 -0.1973 24 6 -1.8261 6.6915 0.3681 25 6 -2.4264 7.7422 -0.3001 26 6 -3.0087 7.5327 -1.5362 27 6 -2.9907 6.2724 -2.1041 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0609 2.9499 34 1 2.2719 2.1232 -1.9978 35 1 1.7660 3.0108 -3.9467 36 1 -3.2957 3.6859 -2.6087 37 1 -2.2820 3.0970 -1.2694 38 1 -1.3479 4.6083 0.3270 39 1 -1.3715 6.8552 1.3341 40 1 -2.4407 8.7267 0.1436 41 1 -3.4781 8.3534 -2.0582 42 1 -3.4462 6.1085 -3.0695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354689288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:37 Heat of formation + Delta-G solvation = 80.463061 kcal Electronic energy + Delta-G solvation = -26122.537654 eV Core-core repulsion = 22490.596871 eV Total energy + Delta-G solvation = -3631.940783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.14016 -39.34526 -39.01777 -35.50431 -34.79968 -32.70142 -31.61605 -31.47988 -30.98460 -30.43649 -27.29639 -26.92577 -24.01975 -23.06054 -22.65326 -22.36841 -21.46809 -20.25627 -19.60020 -18.12781 -17.18310 -16.76827 -16.22941 -15.88304 -15.46473 -15.29040 -15.10062 -14.64626 -14.43925 -14.10617 -13.57550 -13.38019 -13.33786 -12.82465 -12.79397 -12.55854 -12.30476 -11.91792 -11.65470 -11.48512 -11.36689 -11.21760 -11.03480 -10.93311 -10.89689 -10.42355 -10.33248 -10.10030 -9.79251 -9.44482 -9.28104 -9.18057 -9.02370 -8.98807 -8.61508 -8.05630 -6.22130 -4.31883 0.97648 1.22997 1.33088 2.36208 2.47306 3.19885 3.27364 3.28688 3.55354 3.65333 3.84826 4.28107 4.40111 4.47666 4.66307 4.88276 4.93017 4.98954 5.06127 5.10243 5.25055 5.27166 5.42860 5.50627 5.73441 5.83129 5.99887 6.08628 6.24218 6.28231 6.32221 6.44185 6.47990 6.48498 6.51895 6.88279 6.88625 7.01868 7.15595 7.22234 7.46448 7.58727 7.75424 8.04038 8.37918 8.49599 8.60983 8.84009 9.35472 10.83193 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.003837 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.196097 B = 7296.048797 C = 7926.183779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.581 3.419 15 O -0.545 6.545 16 C -0.052 4.052 17 C -0.011 4.011 18 N -0.277 5.277 19 N -0.070 5.070 20 N -0.253 5.253 21 C 0.152 3.848 22 C -0.121 4.121 23 C -0.082 4.082 24 C -0.127 4.127 25 C -0.108 4.108 26 C -0.131 4.131 27 C -0.092 4.092 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.103 0.897 33 H 0.265 0.735 34 H 0.392 0.608 35 H 0.196 0.804 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 8.320 -6.029 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.332 5.332 14 C 0.363 3.637 15 O -0.424 6.424 16 C -0.187 4.187 17 C -0.171 4.171 18 N -0.141 5.141 19 N -0.051 5.051 20 N -0.049 5.049 21 C 0.032 3.968 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.126 4.126 26 C -0.149 4.149 27 C -0.111 4.111 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.226 0.774 35 H 0.213 0.787 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.839 8.837 -6.274 16.050 hybrid contribution 1.863 -0.448 0.617 2.013 sum -9.976 8.389 -5.656 14.209 Atomic orbital electron populations 1.21829 0.98527 0.98465 1.00770 1.21963 0.92475 0.99623 1.02712 1.18918 0.94600 0.89094 0.80259 0.92712 1.21193 0.90410 1.39409 1.06538 0.91880 1.24855 0.98706 0.94607 0.95283 1.69874 1.35257 1.37403 1.09316 0.86443 0.84660 0.77702 0.78316 1.20527 1.21040 1.19743 1.46327 1.13241 1.54424 1.19212 1.16699 0.83540 0.78834 0.84585 1.90692 1.54076 1.59259 1.38381 1.22489 0.87913 1.08829 0.99458 1.23865 1.01702 1.02577 0.88938 1.74827 0.97359 1.15330 1.26536 1.78155 1.17193 1.17832 0.91886 1.47756 1.10743 1.37205 1.09210 1.21215 0.85839 0.97451 0.92261 1.19731 1.02127 0.94241 0.96097 1.21566 0.95712 0.98236 0.94518 1.21250 0.99860 0.92867 1.00487 1.21261 0.97214 0.99008 0.95099 1.21101 1.00881 0.96902 0.96062 1.21112 0.98197 0.92571 0.99231 0.92982 0.94826 0.95466 0.94725 0.87917 0.92449 0.77433 0.78709 0.87266 0.84869 0.83704 0.85640 0.86030 0.85948 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.59 37.16 0.32 -2.46 16 2 C -0.13 -2.87 5.45 -26.73 -0.15 -3.02 16 3 C 0.27 6.23 2.25 -69.08 -0.16 6.07 16 4 H 0.06 1.45 7.50 -51.93 -0.39 1.06 16 5 C -0.54 -13.22 8.73 -34.44 -0.30 -13.52 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.29 11.29 55.43 0.63 -22.67 16 9 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 N -0.68 -12.84 5.01 -56.07 -0.28 -13.13 16 14 C 0.58 10.45 6.16 -12.61 -0.08 10.37 16 15 O -0.54 -10.59 10.55 5.26 0.06 -10.53 16 16 C -0.05 -0.84 6.98 -82.33 -0.57 -1.41 16 17 C -0.01 -0.16 11.55 -17.35 -0.20 -0.36 16 18 N -0.28 -4.51 12.35 30.47 0.38 -4.13 16 19 N -0.07 -1.12 13.14 60.35 0.79 -0.33 16 20 N -0.25 -3.82 3.38 -58.54 -0.20 -4.01 16 21 C 0.15 1.93 6.12 -5.19 -0.03 1.90 16 22 C -0.12 -1.56 5.46 -104.63 -0.57 -2.13 16 23 C -0.08 -1.13 9.65 -39.58 -0.38 -1.51 16 24 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 25 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 26 C -0.13 -1.39 10.05 -39.58 -0.40 -1.78 16 27 C -0.09 -1.07 9.72 -39.58 -0.38 -1.45 16 28 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 29 H 0.03 0.65 5.76 -51.93 -0.30 0.35 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.39 6.41 7.57 -40.82 -0.31 6.10 16 35 H 0.20 2.24 7.56 -52.49 -0.40 1.85 16 36 H 0.11 1.09 8.12 -51.93 -0.42 0.67 16 37 H 0.13 1.79 6.19 -51.93 -0.32 1.47 16 38 H 0.15 2.24 6.17 -52.49 -0.32 1.92 16 39 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -28.46 349.97 -7.43 -35.89 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.26 Total: 10.08 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.79 Total: -11.13 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 1.32 Total: -44.27 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.06 Total: -10.53 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.46 -7.43 -35.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354689288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.353 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds