Wall clock time and date at job start Tue Mar 31 2020 10:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46571 * 2 1 4 4 H 1.09000 * 109.47410 * 55.00131 * 3 2 1 5 5 C 1.50708 * 109.46794 * 174.99952 * 3 2 1 6 6 H 1.07996 * 119.99927 * 120.00247 * 5 3 2 7 7 C 1.37871 * 119.99801 * 300.00013 * 5 3 2 8 8 N 1.31508 * 120.00306 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99904 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47227 * 90.00056 * 9 7 5 11 11 H 1.48498 * 109.46738 * 210.00049 * 9 7 5 12 12 H 1.48496 * 109.46700 * 330.00051 * 9 7 5 13 13 N 1.46496 * 109.47547 * 294.99972 * 3 2 1 14 14 C 1.34779 * 120.00180 * 85.00312 * 13 3 2 15 15 O 1.21618 * 119.99787 * 5.35508 * 14 13 3 16 16 C 1.47231 * 119.99948 * 185.35896 * 14 13 3 17 17 C 1.37009 * 127.19223 * 355.04041 * 16 14 13 18 18 N 1.33321 * 106.37145 * 180.30126 * 17 16 14 19 19 N 1.28504 * 109.43881 * 359.55459 * 18 17 16 20 20 N 1.28718 * 110.64289 * 0.46078 * 19 18 17 21 21 C 1.46501 * 126.04080 * 179.71552 * 20 19 18 22 22 C 1.50698 * 109.47331 * 275.26552 * 21 20 19 23 23 C 1.38233 * 119.99617 * 264.61268 * 22 21 20 24 24 C 1.38235 * 119.99697 * 179.76445 * 23 22 21 25 25 C 1.38228 * 120.00120 * 0.51004 * 24 23 22 26 26 C 1.38237 * 120.00211 * 359.74268 * 25 24 23 27 27 C 1.38237 * 120.00020 * 84.88330 * 22 21 20 28 28 H 1.09003 * 109.47568 * 299.99963 * 1 2 3 29 29 H 1.09000 * 109.47260 * 59.99837 * 1 2 3 30 30 H 1.09005 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46915 * 240.00228 * 2 1 3 32 32 H 1.09002 * 109.46946 * 119.99453 * 2 1 3 33 33 H 0.97003 * 120.00167 * 179.97438 * 8 7 5 34 34 H 0.97007 * 119.99771 * 265.00659 * 13 3 2 35 35 H 1.07999 * 126.80978 * 0.03293 * 17 16 14 36 36 H 1.09005 * 109.46330 * 35.26049 * 21 20 19 37 37 H 1.08994 * 109.47242 * 155.25979 * 21 20 19 38 38 H 1.07999 * 120.00282 * 359.97438 * 23 22 21 39 39 H 1.08008 * 119.99981 * 180.22561 * 24 23 22 40 40 H 1.08007 * 120.00260 * 179.72514 * 25 24 23 41 41 H 1.08000 * 120.00706 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00011 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8815 1.3819 10 1 6.4416 2.1143 2.0850 11 1 6.4395 -0.3096 2.1550 12 1 6.6135 0.8419 0.0279 13 7 1.6523 2.0976 -1.2517 14 6 0.4350 2.6645 -1.3669 15 8 -0.3043 2.7185 -0.4027 16 6 0.0002 3.2182 -2.6600 17 6 0.7409 3.3214 -3.8079 18 7 -0.0528 3.8866 -4.7178 19 7 -1.2052 4.1152 -4.1971 20 7 -1.2298 3.7388 -2.9665 21 6 -2.3712 3.8478 -2.0545 22 6 -2.3904 5.2218 -1.4357 23 6 -1.8127 5.4302 -0.1973 24 6 -1.8261 6.6915 0.3681 25 6 -2.4264 7.7422 -0.3001 26 6 -3.0087 7.5327 -1.5362 27 6 -2.9907 6.2724 -2.1041 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0609 2.9499 34 1 2.2719 2.1232 -1.9978 35 1 1.7660 3.0108 -3.9467 36 1 -3.2957 3.6859 -2.6087 37 1 -2.2820 3.0970 -1.2694 38 1 -1.3479 4.6083 0.3270 39 1 -1.3715 6.8552 1.3341 40 1 -2.4407 8.7267 0.1436 41 1 -3.4781 8.3534 -2.0582 42 1 -3.4462 6.1085 -3.0695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354689288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:36 Heat of formation + Delta-G solvation = 64.040721 kcal Electronic energy + Delta-G solvation = -26123.249780 eV Core-core repulsion = 22490.596871 eV Total energy + Delta-G solvation = -3632.652909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.35587 -40.58873 -40.21930 -37.08574 -36.02765 -34.40489 -33.24319 -32.49522 -31.97355 -31.80401 -28.98750 -28.06791 -25.57270 -24.55369 -23.76905 -23.40017 -22.62400 -21.65120 -21.25324 -19.55219 -18.31470 -18.09177 -17.58653 -17.23037 -17.07824 -16.33008 -16.22632 -16.14155 -15.88341 -15.37180 -14.96309 -14.57573 -14.36564 -14.30254 -14.05458 -13.74394 -13.48806 -13.45622 -13.21813 -13.09649 -12.88082 -12.68171 -12.40367 -12.27828 -12.13568 -12.06701 -11.92661 -11.58379 -11.25009 -11.06022 -10.93228 -10.54188 -10.51534 -9.93153 -9.91174 -9.70410 -8.14618 -6.30578 -0.13141 0.13811 0.41181 1.22301 1.25451 1.47200 1.49118 1.58112 2.16037 2.27859 2.49955 2.83607 3.16236 3.32727 3.48477 3.55676 3.70207 3.95556 4.05281 4.12819 4.21305 4.29319 4.46639 4.51960 4.54663 4.57011 4.68971 4.76182 4.93983 4.95375 5.07925 5.09028 5.26875 5.33420 5.42289 5.44384 5.48927 5.54363 5.56055 5.61928 5.79593 5.89546 5.99826 6.17633 6.74569 6.81394 7.23974 7.29294 7.44325 8.90420 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.003837 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.196097 B = 7296.048797 C = 7926.183779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.283 3.717 4 H 0.011 0.989 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.964 3.036 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.261 1.261 13 N -0.684 5.684 14 C 0.584 3.416 15 O -0.562 6.562 16 C -0.070 4.070 17 C 0.004 3.996 18 N -0.295 5.295 19 N -0.070 5.070 20 N -0.246 5.246 21 C 0.148 3.852 22 C -0.130 4.130 23 C -0.106 4.106 24 C -0.140 4.140 25 C -0.106 4.106 26 C -0.129 4.129 27 C -0.097 4.097 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.226 0.774 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 9.548 -7.839 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.181 3.819 4 H 0.029 0.971 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.789 3.211 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.185 1.185 13 N -0.332 5.332 14 C 0.368 3.632 15 O -0.442 6.442 16 C -0.205 4.205 17 C -0.156 4.156 18 N -0.157 5.157 19 N -0.051 5.051 20 N -0.042 5.042 21 C 0.029 3.971 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.158 4.158 25 C -0.124 4.124 26 C -0.147 4.147 27 C -0.116 4.116 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.242 0.758 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.934 10.078 -8.120 17.604 hybrid contribution 1.803 -0.751 1.194 2.289 sum -10.131 9.327 -6.926 15.414 Atomic orbital electron populations 1.21668 0.96951 0.99466 1.00137 1.21807 0.93796 0.98947 1.01603 1.18468 0.93742 0.89116 0.80613 0.97081 1.21559 0.91394 1.38945 1.06729 0.90920 1.25639 1.02756 0.94415 0.95102 1.70016 1.36866 1.38296 1.09808 0.85469 0.79782 0.77276 0.78579 1.20666 1.21178 1.18514 1.46000 1.14047 1.54789 1.18389 1.16845 0.82938 0.78213 0.85173 1.90706 1.54502 1.59604 1.39366 1.22186 0.88940 1.10543 0.98816 1.24371 1.02605 1.00844 0.87820 1.74837 0.97698 1.16192 1.27021 1.78118 1.17280 1.17671 0.91986 1.47963 1.10865 1.36246 1.09167 1.21392 0.86245 0.97332 0.92105 1.19753 1.02765 0.94694 0.95930 1.21462 0.97226 0.98321 0.95458 1.21437 1.00392 0.92829 1.01092 1.21599 0.96038 0.99659 0.95087 1.21506 0.99961 0.97319 0.95902 1.21356 0.97840 0.92582 0.99783 0.94821 0.94168 0.93563 0.93954 0.90702 0.92624 0.75849 0.75750 0.84414 0.86168 0.86460 0.85052 0.83231 0.82961 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 8.59 71.98 0.62 -4.44 16 2 C -0.12 -5.54 5.45 30.60 0.17 -5.38 16 3 C 0.28 13.25 2.25 44.25 0.10 13.35 16 4 H 0.01 0.63 7.50 -2.39 -0.02 0.61 16 5 C -0.55 -27.07 8.73 25.60 0.22 -26.85 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.34 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -49.40 11.29 21.44 0.24 -49.16 16 9 Si 0.96 40.31 29.54 68.60 2.03 42.34 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 13 N -0.68 -25.61 5.01 -449.56 -2.25 -27.86 16 14 C 0.58 21.18 6.16 86.61 0.53 21.71 16 15 O -0.56 -22.68 10.55 -4.09 -0.04 -22.73 16 16 C -0.07 -2.20 6.98 40.41 0.28 -1.92 16 17 C 0.00 0.11 11.55 84.18 0.97 1.08 16 18 N -0.29 -9.04 12.35 -57.50 -0.71 -9.75 16 19 N -0.07 -2.12 13.14 37.02 0.49 -1.64 16 20 N -0.25 -7.16 3.38 -339.13 -1.15 -8.31 16 21 C 0.15 3.70 6.12 85.63 0.52 4.23 16 22 C -0.13 -3.30 5.46 -19.87 -0.11 -3.41 16 23 C -0.11 -3.02 9.65 22.27 0.21 -2.80 16 24 C -0.14 -3.38 10.05 22.27 0.22 -3.15 16 25 C -0.11 -2.04 10.05 22.27 0.22 -1.82 16 26 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 27 C -0.10 -2.05 9.72 22.27 0.22 -1.84 16 28 H 0.03 1.46 7.92 -2.39 -0.02 1.44 16 29 H 0.04 1.55 5.76 -2.39 -0.01 1.53 16 30 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 33 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.41 12.82 7.57 -92.70 -0.70 12.12 16 35 H 0.23 4.55 7.56 -2.91 -0.02 4.53 16 36 H 0.14 2.56 8.12 -2.38 -0.02 2.54 16 37 H 0.12 3.33 6.19 -2.39 -0.01 3.32 16 38 H 0.12 3.94 6.17 -2.91 -0.02 3.92 16 39 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -62.02 349.97 3.82 -58.20 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.35 Total: 30.75 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.86 Total: -11.84 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.38 Total: -96.72 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.04 Total: -22.73 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -62.02 3.82 -58.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354689288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.238 kcal (2) G-P(sol) polarization free energy of solvation -62.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds