Wall clock time and date at job start Tue Mar 31 2020 10:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47082 * 2 1 4 4 H 1.08995 * 109.47102 * 55.00372 * 3 2 1 5 5 C 1.53005 * 109.47034 * 175.00173 * 3 2 1 6 6 N 1.46496 * 109.46937 * 295.00073 * 3 2 1 7 7 C 1.34779 * 119.99635 * 155.00195 * 6 3 2 8 8 O 1.21273 * 120.00326 * 359.97438 * 7 6 3 9 9 C 1.50701 * 119.99873 * 180.02562 * 7 6 3 10 10 H 1.09002 * 108.70301 * 298.25518 * 9 7 6 11 11 C 1.54567 * 108.62907 * 56.43463 * 9 7 6 12 12 S 1.84209 * 101.32581 * 143.97776 * 11 9 7 13 13 C 1.84335 * 93.82714 * 327.58757 * 12 11 9 14 14 N 1.45502 * 108.75551 * 179.97438 * 9 7 6 15 15 C 1.34770 * 122.43193 * 60.26916 * 14 9 7 16 16 O 1.21289 * 119.99896 * 359.97438 * 15 14 9 17 17 C 1.50698 * 120.00085 * 180.02562 * 15 14 9 18 18 C 1.53002 * 109.47149 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47207 * 179.97438 * 18 17 15 20 20 H 1.07994 * 119.99603 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99838 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00380 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 239.99776 * 23 21 19 26 26 H 1.48500 * 109.47454 * 119.99769 * 23 21 19 27 27 H 1.09000 * 109.47139 * 59.99747 * 1 2 3 28 28 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46853 * 300.00079 * 1 2 3 30 30 H 1.09007 * 109.46956 * 240.00417 * 2 1 3 31 31 H 1.08998 * 109.47877 * 120.00241 * 2 1 3 32 32 H 1.08998 * 109.47128 * 300.00378 * 5 3 2 33 33 H 1.09004 * 109.46780 * 59.99982 * 5 3 2 34 34 H 1.09003 * 109.47080 * 179.97438 * 5 3 2 35 35 H 0.96996 * 120.00509 * 334.99835 * 6 3 2 36 36 H 1.08998 * 111.05236 * 261.99071 * 11 9 7 37 37 H 1.08996 * 111.04788 * 25.96811 * 11 9 7 38 38 H 1.09003 * 110.89844 * 275.43462 * 13 12 11 39 39 H 1.09008 * 110.77038 * 151.93417 * 13 12 11 40 40 H 1.08993 * 109.47511 * 59.99584 * 17 15 14 41 41 H 1.09006 * 109.46962 * 299.99217 * 17 15 14 42 42 H 1.09005 * 109.47493 * 59.99648 * 18 17 15 43 43 H 1.08998 * 109.47006 * 299.99612 * 18 17 15 44 44 H 0.97001 * 119.99667 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2995 8 8 1.7319 4.1028 -0.3061 9 6 1.1263 4.1122 -2.5870 10 1 1.8880 3.9076 -3.3394 11 6 -0.2160 3.5115 -3.0630 12 16 -1.0374 4.9918 -3.7892 13 6 -0.2586 6.1621 -2.5969 14 7 1.0628 5.5485 -2.3633 15 6 2.1323 6.2661 -1.9663 16 8 3.1973 5.7158 -1.7819 17 6 2.0046 7.7520 -1.7503 18 6 3.3535 8.3205 -1.3052 19 6 3.2260 9.8066 -1.0899 20 1 2.2778 10.2966 -1.2544 21 6 4.3202 10.5407 -0.6838 22 7 5.4750 9.9440 -0.4838 23 14 4.1619 12.3826 -0.4161 24 1 2.7687 12.8071 -0.7062 25 1 5.0956 13.0967 -1.3237 26 1 4.4958 12.7085 0.9937 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8532 0.9570 1.0570 33 1 3.9994 0.9053 -0.7162 34 1 3.9282 2.4720 0.1252 35 1 1.4870 1.5661 -2.0462 36 1 -0.0549 2.7428 -3.8188 37 1 -0.7888 3.1186 -2.2230 38 1 -0.8309 6.2116 -1.6705 39 1 -0.1525 7.1522 -3.0403 40 1 1.2577 7.9445 -0.9802 41 1 1.6981 8.2294 -2.6811 42 1 4.1008 8.1281 -2.0751 43 1 3.6597 7.8431 -0.3744 44 1 5.5570 8.9875 -0.6225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361776810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:09 Heat of formation + Delta-G solvation = -106.670032 kcal Electronic energy + Delta-G solvation = -24844.484997 eV Core-core repulsion = 21307.580714 eV Total energy + Delta-G solvation = -3536.904282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88197 -40.29916 -37.77287 -37.08231 -35.99055 -34.02628 -33.03098 -31.85489 -30.56646 -28.47122 -27.45007 -25.59135 -24.75333 -23.87309 -22.13785 -21.62690 -20.41452 -19.22278 -18.80355 -18.37932 -17.81971 -17.16412 -16.78188 -16.47395 -15.92433 -15.63525 -15.59804 -15.30449 -14.92683 -14.84280 -14.65794 -14.38421 -14.33013 -14.21480 -14.04955 -13.60507 -13.37362 -13.29816 -13.05392 -12.72386 -12.71160 -12.31158 -12.14264 -12.11176 -12.07242 -11.93798 -11.85847 -11.68394 -11.14842 -10.88377 -10.69725 -10.59050 -10.18759 -9.99046 -8.98322 -8.72617 -6.44276 0.46052 0.81284 1.34095 1.46829 1.52470 1.63992 1.66082 1.79459 2.16902 2.57381 3.03240 3.14631 3.50326 3.59105 3.73820 3.89518 3.96597 4.03552 4.13926 4.18987 4.22264 4.30301 4.31500 4.40892 4.43664 4.55705 4.70197 4.77415 4.78949 4.93189 5.03574 5.12100 5.14550 5.19162 5.24312 5.30930 5.40556 5.49964 5.88517 5.94778 6.15747 6.44729 6.47756 7.01128 7.20228 7.42167 8.67126 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.003552 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.719950 B = 7880.907198 C = 9354.539987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.142 3.858 4 H 0.058 0.942 5 C -0.162 4.162 6 N -0.704 5.704 7 C 0.502 3.498 8 O -0.565 6.565 9 C 0.111 3.889 10 H 0.113 0.887 11 C -0.052 4.052 12 S -0.252 6.252 13 C 0.148 3.852 14 N -0.606 5.606 15 C 0.534 3.466 16 O -0.564 6.564 17 C -0.107 4.107 18 C 0.032 3.968 19 C -0.617 4.617 20 H 0.068 0.932 21 C -0.047 4.047 22 N -0.939 5.939 23 Si 1.131 2.869 24 H -0.258 1.258 25 H -0.278 1.278 26 H -0.281 1.281 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.015 0.985 35 H 0.417 0.583 36 H 0.170 0.830 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.109 0.891 42 H -0.019 1.019 43 H -0.028 1.028 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.569 -22.801 -6.386 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.037 3.963 4 H 0.076 0.924 5 C -0.221 4.221 6 N -0.359 5.359 7 C 0.286 3.714 8 O -0.442 6.442 9 C 0.002 3.998 10 H 0.131 0.869 11 C -0.200 4.200 12 S -0.025 6.025 13 C -0.084 4.084 14 N -0.343 5.343 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.146 4.146 18 C -0.006 4.006 19 C -0.654 4.654 20 H 0.087 0.913 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.950 3.050 24 H -0.182 1.182 25 H -0.204 1.204 26 H -0.207 1.207 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.188 0.812 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.115 0.885 41 H 0.127 0.873 42 H -0.001 1.001 43 H -0.010 1.010 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.822 -21.124 -6.090 27.682 hybrid contribution 0.597 -1.658 0.520 1.837 sum -16.225 -22.781 -5.570 28.518 Atomic orbital electron populations 1.21783 0.94789 1.02534 1.01854 1.21778 0.96812 0.92493 1.04559 1.21027 0.94228 0.94712 0.86318 0.92389 1.22163 0.96179 1.00359 1.03376 1.45843 1.70047 1.05408 1.14593 1.21132 0.76734 0.83332 0.90221 1.90759 1.50304 1.65058 1.38110 1.21377 1.01268 0.81588 0.95600 0.86899 1.24650 0.91799 0.98152 1.05407 1.88393 1.63477 1.04801 1.45860 1.24528 0.83310 1.00004 1.00572 1.48263 1.10298 1.06274 1.69415 1.21053 0.82288 0.90252 0.74107 1.90644 1.29420 1.73202 1.50878 1.21508 1.00538 0.88815 1.03775 1.18820 0.92584 0.95622 0.93556 1.22512 0.99475 0.93455 1.49991 0.91336 1.27732 0.91942 1.11753 0.92873 1.70839 1.27035 1.11842 1.47948 0.82804 0.76892 0.68116 0.77138 1.18221 1.20382 1.20711 0.91995 0.90960 0.94050 0.89224 0.89547 0.90260 0.90834 0.96609 0.74533 0.81235 0.86306 0.87512 0.85154 0.88475 0.87326 1.00050 1.00996 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.80 71.98 0.71 -0.69 16 2 C -0.12 -1.19 5.47 30.59 0.17 -1.02 16 3 C 0.14 2.70 2.57 45.00 0.12 2.81 16 4 H 0.06 1.47 7.58 -2.39 -0.02 1.45 16 5 C -0.16 -3.61 9.48 71.98 0.68 -2.92 16 6 N -0.70 -12.81 4.39 -442.53 -1.94 -14.76 16 7 C 0.50 14.13 6.42 87.66 0.56 14.69 16 8 O -0.57 -23.24 14.27 15.42 0.22 -23.02 16 9 C 0.11 2.60 2.87 44.97 0.13 2.73 16 10 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 11 C -0.05 -0.64 6.67 72.52 0.48 -0.16 16 12 S -0.25 -4.41 23.44 -56.49 -1.32 -5.73 16 13 C 0.15 3.33 7.22 127.57 0.92 4.25 16 14 N -0.61 -18.43 2.76 -807.13 -2.23 -20.65 16 15 C 0.53 22.64 6.74 87.66 0.59 23.23 16 16 O -0.56 -29.38 14.67 15.37 0.23 -29.15 16 17 C -0.11 -4.66 4.42 29.85 0.13 -4.53 16 18 C 0.03 1.86 3.57 29.85 0.11 1.96 16 19 C -0.62 -36.79 9.11 25.60 0.23 -36.56 16 20 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 21 C -0.05 -2.85 5.46 84.65 0.46 -2.39 16 22 N -0.94 -63.04 13.65 21.45 0.29 -62.74 16 23 Si 1.13 51.91 29.90 68.60 2.05 53.96 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H 0.06 0.48 7.75 -2.39 -0.02 0.46 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.42 3.92 8.36 -92.71 -0.78 3.15 16 36 H 0.17 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.12 1.23 7.84 -2.39 -0.02 1.21 16 38 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.13 2.70 7.13 -2.38 -0.02 2.69 16 40 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 41 H 0.11 4.11 7.64 -2.38 -0.02 4.09 16 42 H -0.02 -1.21 7.97 -2.38 -0.02 -1.23 16 43 H -0.03 -1.89 7.97 -2.39 -0.02 -1.90 16 44 H 0.25 17.58 7.22 -92.71 -0.67 16.91 16 Total: -1.00 -91.38 370.99 2.90 -88.48 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.31 Total: 12.20 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.29 Total: 1.41 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -3.88 Total: -98.16 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: 0.45 Total: -52.17 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.05 Total: 53.96 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -1.32 Total: -5.73 kcal Total: -91.38 2.90 -88.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361776810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.187 kcal (2) G-P(sol) polarization free energy of solvation -91.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds