Wall clock time and date at job start Tue Mar 31 2020 10:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 6 6 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 7 7 C 1.34776 * 120.00219 * 154.99866 * 6 3 2 8 8 O 1.21274 * 120.00173 * 359.97438 * 7 6 3 9 9 C 1.50705 * 119.99786 * 180.02562 * 7 6 3 10 10 H 1.09004 * 108.70227 * 61.74416 * 9 7 6 11 11 C 1.54557 * 108.75422 * 303.63844 * 9 7 6 12 12 S 1.84213 * 101.32590 * 215.93499 * 11 9 7 13 13 C 1.84076 * 93.90893 * 32.25838 * 12 11 9 14 14 N 1.45503 * 108.75116 * 179.97438 * 9 7 6 15 15 C 1.34778 * 122.43132 * 299.91085 * 14 9 7 16 16 O 1.21286 * 119.99543 * 0.02562 * 15 14 9 17 17 C 1.50700 * 120.00095 * 180.02562 * 15 14 9 18 18 C 1.52998 * 109.46804 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.46655 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00358 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99863 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99934 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47181 * 90.00058 * 23 21 19 25 25 H 1.48501 * 109.46770 * 209.99743 * 23 21 19 26 26 H 1.48496 * 109.47454 * 329.99929 * 23 21 19 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.08996 * 109.47654 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47476 * 300.00087 * 5 3 2 34 34 H 1.09008 * 109.46970 * 60.00049 * 5 3 2 35 35 H 0.97006 * 119.99491 * 334.99935 * 6 3 2 36 36 H 1.09002 * 111.05621 * 333.95076 * 11 9 7 37 37 H 1.09001 * 111.04795 * 97.92462 * 11 9 7 38 38 H 1.09000 * 110.77409 * 208.27382 * 13 12 11 39 39 H 1.08999 * 110.93313 * 84.92577 * 13 12 11 40 40 H 1.08993 * 109.46895 * 300.00497 * 17 15 14 41 41 H 1.08998 * 109.46860 * 60.00468 * 17 15 14 42 42 H 1.09006 * 109.47461 * 299.99583 * 18 17 15 43 43 H 1.08998 * 109.47211 * 60.00461 * 18 17 15 44 44 H 0.97001 * 120.00239 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7318 4.1028 -0.3061 9 6 1.1262 4.1122 -2.5871 10 1 0.1359 3.7584 -2.8742 11 6 2.1323 3.7121 -3.6901 12 16 2.2400 5.2717 -4.6645 13 6 1.9754 6.3538 -3.1990 14 7 1.0627 5.5485 -2.3633 15 6 0.2316 6.1030 -1.4587 16 8 -0.4992 5.3986 -0.7948 17 6 0.2104 7.5983 -1.2721 18 6 -0.8117 7.9631 -0.1937 19 6 -0.8333 9.4585 -0.0076 20 1 -0.1829 10.0858 -0.5990 21 6 -1.6829 10.0257 0.9186 22 7 -1.7014 11.3306 1.0813 23 14 -2.8074 8.9406 1.9420 24 1 -2.1103 8.5451 3.1922 25 1 -4.0441 9.6897 2.2806 26 1 -3.1618 7.7246 1.1669 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.9281 2.4720 0.1253 33 1 3.8532 0.9571 1.0571 34 1 3.9994 0.9054 -0.7162 35 1 1.4870 1.5661 -2.0463 36 1 3.0998 3.4505 -3.2614 37 1 1.7421 2.8963 -4.2987 38 1 1.5046 7.2924 -3.4915 39 1 2.9143 6.5399 -2.6777 40 1 1.1990 7.9402 -0.9660 41 1 -0.0652 8.0777 -2.2114 42 1 -1.8005 7.6211 -0.4995 43 1 -0.5357 7.4837 0.7455 44 1 -2.2993 11.7297 1.7326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361776811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:13 Heat of formation + Delta-G solvation = -73.087525 kcal Electronic energy + Delta-G solvation = -24877.214821 eV Core-core repulsion = 21341.766785 eV Total energy + Delta-G solvation = -3535.448036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.69515 -39.00563 -36.72587 -35.88987 -33.53227 -32.96535 -31.66545 -30.81197 -29.84210 -27.40599 -26.31165 -24.60631 -23.76075 -21.99888 -20.92740 -20.34144 -19.05425 -17.82794 -17.51870 -17.06793 -16.32170 -16.11118 -15.54040 -15.23351 -14.94727 -14.40623 -14.17833 -14.09313 -13.89479 -13.79184 -13.64307 -13.40466 -13.20384 -12.80768 -12.56602 -12.44189 -12.38993 -12.10361 -12.00803 -11.61723 -11.42020 -11.38061 -11.08809 -10.99828 -10.93901 -10.14044 -10.03115 -9.89865 -9.76489 -9.30125 -9.25429 -9.15632 -8.75300 -8.48083 -8.17259 -6.00705 -3.99205 1.30356 1.66145 2.49558 2.55776 3.02558 3.22891 3.40629 3.46658 3.57868 3.92624 4.29441 4.40881 4.53561 4.63242 4.69958 4.75124 4.87960 4.92787 5.06936 5.12500 5.16617 5.26075 5.29912 5.31369 5.35055 5.44982 5.58674 5.63331 5.81343 5.90871 5.99365 6.00481 6.08885 6.15944 6.32710 6.64380 7.28210 7.37002 7.39129 7.45475 7.80737 8.12207 8.47830 8.57932 9.01983 9.62487 11.12106 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.004087 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.827378 B = 6848.925570 C = 8537.272146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C 0.140 3.860 4 H 0.089 0.911 5 C -0.162 4.162 6 N -0.727 5.727 7 C 0.507 3.493 8 O -0.501 6.501 9 C 0.117 3.883 10 H 0.109 0.891 11 C -0.068 4.068 12 S -0.263 6.263 13 C 0.161 3.839 14 N -0.612 5.612 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.116 4.116 18 C 0.003 3.997 19 C -0.524 4.524 20 H 0.073 0.927 21 C 0.070 3.930 22 N -0.903 5.903 23 Si 0.877 3.123 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.262 1.262 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.396 0.604 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.023 0.977 43 H 0.020 0.980 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.856 -24.086 -10.666 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C 0.036 3.964 4 H 0.107 0.893 5 C -0.221 4.221 6 N -0.381 5.381 7 C 0.289 3.711 8 O -0.374 6.374 9 C 0.008 3.992 10 H 0.127 0.873 11 C -0.217 4.217 12 S -0.036 6.036 13 C -0.073 4.073 14 N -0.351 5.351 15 C 0.324 3.676 16 O -0.387 6.387 17 C -0.155 4.155 18 C -0.035 4.035 19 C -0.562 4.562 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.542 5.542 23 Si 0.704 3.296 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.186 1.186 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.658 -23.539 -10.619 27.936 hybrid contribution -0.718 -0.957 1.298 1.765 sum 9.940 -24.496 -9.321 28.031 Atomic orbital electron populations 1.21780 0.95147 1.01578 1.02653 1.21821 0.96710 0.95283 1.02870 1.21000 0.94785 0.92994 0.87626 0.89278 1.22170 0.95402 1.02648 1.01858 1.46005 1.71958 1.06601 1.13566 1.20774 0.77359 0.82397 0.90545 1.90772 1.47295 1.63712 1.35582 1.21093 1.01226 0.84115 0.92813 0.87327 1.24459 1.01982 0.98624 0.96669 1.88356 1.95678 1.03588 1.16016 1.24281 0.97197 0.96730 0.89049 1.48471 1.41828 1.03254 1.41518 1.21414 0.77411 0.92208 0.76532 1.90661 1.40228 1.64035 1.43797 1.21692 1.03574 0.87416 1.02861 1.19376 0.93814 0.97033 0.93304 1.21090 1.23161 0.89964 1.21947 0.90884 1.24950 0.96724 0.94817 0.96637 1.69908 1.38830 1.09882 1.35610 0.86808 0.80432 0.81250 0.81144 1.20225 1.21435 1.18589 0.92606 0.92372 0.92515 0.90441 0.91512 0.92049 0.91668 0.92587 0.77027 0.87790 0.85574 0.85754 0.88408 0.89417 0.89507 0.95845 0.96117 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.80 37.16 0.36 -0.80 16 2 C -0.13 -0.84 5.47 -26.73 -0.15 -0.98 16 3 C 0.14 1.29 2.57 -67.93 -0.17 1.11 16 4 H 0.09 1.12 7.58 -51.92 -0.39 0.72 16 5 C -0.16 -1.34 9.48 37.15 0.35 -0.99 16 6 N -0.73 -6.62 4.40 -53.80 -0.24 -6.85 16 7 C 0.51 6.76 6.42 -10.98 -0.07 6.68 16 8 O -0.50 -9.34 14.25 -13.87 -0.20 -9.54 16 9 C 0.12 1.37 2.87 -68.80 -0.20 1.18 16 10 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 11 C -0.07 -0.52 6.68 37.98 0.25 -0.27 16 12 S -0.26 -2.63 23.43 -107.50 -2.52 -5.15 16 13 C 0.16 1.86 7.21 60.47 0.44 2.30 16 14 N -0.61 -8.95 2.77 -169.12 -0.47 -9.42 16 15 C 0.53 10.34 6.74 -10.98 -0.07 10.27 16 16 O -0.51 -11.85 14.65 -13.88 -0.20 -12.06 16 17 C -0.12 -2.33 4.43 -27.88 -0.12 -2.46 16 18 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 19 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 20 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 23 Si 0.88 23.09 27.47 -169.99 -4.67 18.42 16 24 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.26 -6.87 6.54 56.52 0.37 -6.50 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.45 7.75 -51.93 -0.40 0.05 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.40 2.27 8.36 -40.82 -0.34 1.93 16 36 H 0.10 0.72 7.85 -51.93 -0.41 0.31 16 37 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.12 1.34 7.14 -51.93 -0.37 0.97 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.09 1.57 7.64 -51.93 -0.40 1.18 16 42 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 43 H 0.02 0.56 7.53 -51.93 -0.39 0.17 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -37.47 368.68 -9.18 -46.64 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.31 Total: -2.51 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 0.10 Total: 2.46 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.07 Total: -43.83 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.40 Total: -21.60 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.67 Total: 18.42 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.52 Total: -5.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.47 -9.18 -46.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361776811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.443 kcal (2) G-P(sol) polarization free energy of solvation -37.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds